Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G2254 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 2.1e-197 692.2 354 100.0
CDE06G0791 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 6.2e-149 531.2 304 91.8
TAR633G2000 Trochodendron aralioides HOM05D004355 ORTHO05D005228 4.1e-60 236.1 315 45.7
TAR636G0816 Trochodendron aralioides HOM05D004355 ORTHO05D005228 9.5e-57 224.9 310 44.8
Nn2g13729 Nelumbo nucifera HOM05D004355 ORTHO05D005228 8.0e-56 221.9 322 45.0
TAR369G0267 Trochodendron aralioides HOM05D004355 ORTHO05D005228 4.1e-52 209.5 307 44.0
Aqoxy1G01202 Aquilegia oxysepala HOM05D004355 ORTHO05D005228 1.3e-50 204.5 326 43.9
CiPaw.10G132700 Carya illinoinensis HOM05D004355 ORTHO05D005228 1.9e-49 200.7 341 39.6
Phvul.001G178100 Phaseolus vulgaris HOM05D004355 ORTHO05D005228 6.1e-48 195.7 341 40.5
QL07p044062 Quercus lobata HOM05D004355 ORTHO05D005228 1.8e-47 194.1 352 38.4
VMungo1383G3555 Vigna mungo HOM05D004355 ORTHO05D005228 6.8e-47 192.2 344 40.4
Dinv35767 Davidia involucrata HOM05D004355 ORTHO05D003235 1.2e-46 191.4 338 39.3
Sc02g0001740 Simmondsia chinensis HOM05D004355 ORTHO05D005228 2.0e-46 190.7 350 38.0
Atru.chr8.1850 Acer truncatum HOM05D004355 ORTHO05D005228 2.6e-46 190.3 316 39.9
Cfa017577 Carpinus fangiana HOM05D004355 ORTHO05D005228 2.6e-46 190.3 323 40.6
Potri.006G126600 Populus trichocarpa HOM05D004355 ORTHO05D005228 3.4e-46 189.9 320 41.9
Haze_20575 Corylus avellana HOM05D004355 ORTHO05D005228 7.5e-46 188.7 321 39.9
CANSAT80G0576 Cannabis sativa HOM05D004355 ORTHO05D005228 9.8e-46 188.3 323 40.2
Hma1.2p1_1099F.1_g256870 Hydrangea macrophylla HOM05D004355 ORTHO05D005228 2.2e-45 187.2 337 37.7
Sed0019590 Sechium edule HOM05D004355 ORTHO05D005228 4.9e-45 186.0 317 41.0
FvH4_6g16100 Fragaria vesca HOM05D004355 ORTHO05D005228 8.3e-45 185.3 319 39.5
PSO339G4715 Papaver somniferum HOM05D004355 ORTHO05D005228 1.1e-44 184.9 328 37.2
TWI77G0715 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 1.1e-44 184.9 330 39.7
Prupe.6G235000 Prunus persica HOM05D004355 ORTHO05D005228 1.4e-44 184.5 325 39.1
Sabra06G0099700 Salix brachista HOM05D004355 ORTHO05D005228 1.4e-44 184.5 316 40.8
MELO3C009345.2 Cucumis melo HOM05D004355 ORTHO05D005228 4.1e-44 183.0 319 40.8
CsaV3_3G035850 Cucumis sativus L. HOM05D004355 ORTHO05D005228 5.4e-44 182.6 319 40.8
Lalb_Chr25g0289061 Lupinus albus HOM05D004355 ORTHO05D005228 5.4e-44 182.6 323 38.7
Glyma.03G182000 Glycine max HOM05D004355 ORTHO05D005228 7.0e-44 182.2 336 39.0
ClCG10G020240 Citrullus lanatus HOM05D004355 ORTHO05D005228 1.2e-43 181.4 319 40.8
FAN05G2251 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.2e-43 181.4 306 41.2
Glyma.19G182500 Glycine max HOM05D004355 ORTHO05D005228 1.6e-43 181.0 345 37.4
MD04G1095900 Malus domestica HOM05D004355 ORTHO05D005228 2.0e-43 180.6 329 38.9
Lj1g0007988 Lotus japonicus HOM05D004355 ORTHO05D005228 3.5e-43 179.9 317 38.8
Lalb_Chr01g0018741 Lupinus albus HOM05D004355 ORTHO05D005228 3.5e-43 179.9 334 37.7
CSS0041806 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 1.0e-42 178.3 325 38.2
MELO3C014220.2 Cucumis melo HOM05D004355 ORTHO05D005228 1.3e-42 177.9 321 38.0
CsaV3_6G039740 Cucumis sativus L. HOM05D004355 ORTHO05D005228 1.7e-42 177.6 321 37.7
Gorai.002G162400 Gossypium raimondii HOM05D004355 ORTHO05D005228 1.7e-42 177.6 353 35.7
FAN02G3539 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.3e-42 177.2 314 38.2
Gohir.D01G128600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 2.3e-42 177.2 353 35.1
Potri.016G091400 Populus trichocarpa HOM05D004355 ORTHO05D005228 2.3e-42 177.2 315 39.7
Manes.08G008600 Manihot esculenta HOM05D004355 ORTHO05D005228 3.0e-42 176.8 329 39.5
Thecc.05G062900 Theobroma cacao HOM05D004355 ORTHO05D005228 3.0e-42 176.8 303 41.6
CSS0012498 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 6.6e-42 175.6 313 39.3
CSS0033330 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 1.1e-41 174.9 327 37.6
Gohir.A04G073200 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.9e-41 174.1 353 35.4
Gorai.009G416200 Gossypium raimondii HOM05D004355 ORTHO05D005228 1.9e-41 174.1 353 35.4
Gohir.A01G139600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 2.5e-41 173.7 354 35.0
ClCG04G009160 Citrullus lanatus HOM05D004355 ORTHO05D005228 3.3e-41 173.3 313 39.6
AUR62039881 Chenopodium quinoa HOM05D004355 ORTHO05D005228 1.6e-40 171.0 296 39.5
Gohir.D04G112100 Gossypium hirsutum HOM05D004355 ORTHO05D005228 2.8e-40 170.2 353 35.1
COL.COLO4_26990 Corchorus olitorius HOM05D004355 ORTHO05D005228 4.7e-40 169.5 302 40.1
Duzib128G1889 Durio zibethinus HOM05D004355 ORTHO05D005228 4.7e-40 169.5 302 38.7
Nitab4.5_0002963g0100 Nicotiana tabacum HOM05D004355 ORTHO05D005228 6.2e-40 169.1 319 37.3
Ah.08g211740 Amaranthus hybridus HOM05D004355 ORTHO05D005228 8.0e-40 168.7 330 36.7
PGSC0003DMG400035240 Solanum tuberosum HOM05D004355 ORTHO05D005228 1.1e-39 168.3 328 36.0
TWI74G0762 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 1.4e-39 167.9 329 37.7
Duzib093G1016 Durio zibethinus HOM05D004355 ORTHO05D005228 1.8e-39 167.5 302 39.4
Duzib106G0643 Durio zibethinus HOM05D004355 ORTHO05D005228 8.9e-39 165.2 301 37.5
Cpa.g.sc92.114 Carica papaya HOM05D004355 ORTHO05D005228 1.5e-38 164.5 325 39.1
Manes.09G063900 Manihot esculenta HOM05D004355 ORTHO05D005228 2.0e-38 164.1 324 37.0
DCAR_009301 Daucus carota HOM05D004355 ORTHO05D005228 2.6e-38 163.7 312 35.6
FAN09G2012 Fragaria x ananassa HOM05D004355 ORTHO05D005228 5.8e-38 162.5 310 39.0
Aa31LG5G22300 Aethionema arabicum HOM05D004355 ORTHO05D005228 1.7e-37 161.0 319 37.3
PGR004G0459 Punica granatum HOM05D004355 ORTHO05D005228 1.7e-37 161.0 316 36.7
Ciclev10011674m.g Citrus clementina HOM05D004355 ORTHO05D005228 2.9e-37 160.2 341 35.2
Gohir.A09G148600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 2.9e-37 160.2 303 37.0
Gorai.006G165700 Gossypium raimondii HOM05D004355 ORTHO05D005228 8.3e-37 158.7 302 38.1
Sed0012541 Sechium edule HOM05D004355 ORTHO05D005228 1.1e-36 158.3 330 35.2
Gohir.D09G144400 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.4e-36 157.9 302 38.1
CARHR131530 Cardamine hirsuta HOM05D004355 ORTHO05D005228 3.2e-36 156.8 317 37.5
Sopen09g002770 Solanum pennellii HOM05D004355 ORTHO05D005228 4.1e-36 156.4 311 35.0
AT2G37035 Arabidopsis thaliana HOM05D004355 ORTHO05D005228 5.4e-36 156.0 317 38.5
ECA233G2716 Erigeron canadensis HOM05D004355 ORTHO05D005228 5.4e-36 156.0 294 37.1
ECA248G2910 Erigeron canadensis HOM05D004355 ORTHO05D005228 5.4e-36 156.0 319 35.1
Solyc09g007950.3 Solanum lycopersicum HOM05D004355 ORTHO05D005228 9.2e-36 155.2 311 35.0
SGA_v2.0_scaffold75G24855 Striga asiatica HOM05D004355 ORTHO05D005228 2.7e-35 153.7 313 36.7
Ca_08851_v3 Cicer arietinum L. HOM05D004355 ORTHO05D005228 1.0e-34 151.8 368 31.5
TPR.G9373 Trifolium pratense HOM05D004355 ORTHO05D005228 1.0e-34 151.8 351 33.3
Psat3g043400 Pisum sativum HOM05D004355 ORTHO05D005228 1.3e-34 151.4 337 34.4
THA.LOC104823460 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 1.7e-34 151.0 318 36.8
AL4G33360 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 2.3e-34 150.6 318 37.7
SalBow5G3882 Salvia bowleyana HOM05D004355 ORTHO05D005228 2.3e-34 150.6 308 34.1
SalBow5G3919 Salvia bowleyana HOM05D004355 ORTHO05D005228 2.3e-34 150.6 308 34.1
Lsat_1_v5_gn_1_53141 Lactuca sativa HOM05D004355 ORTHO05D005228 3.0e-34 150.2 322 34.2
Nitab4.5_0000101g0300 Nicotiana tabacum HOM05D004355 ORTHO05D005228 3.0e-34 150.2 305 35.7
BraA05t19847Z Brassica rapa HOM05D004355 ORTHO05D005228 5.1e-34 149.4 312 35.9
Medtr7g101730 Medicago truncatula HOM05D004355 ORTHO05D005228 5.1e-34 149.4 336 32.7
BolC4t22685H Brassica oleracea HOM05D004355 ORTHO05D005228 6.6e-34 149.1 315 36.5
Carub.0004s1891 Capsella rubella HOM05D004355 ORTHO05D005228 6.6e-34 149.1 321 35.5
BcaC02g11829 Brassica carinata HOM05D004355 ORTHO05D005228 8.6e-34 148.7 315 36.2
C04p10920 Brassica napus HOM05D004355 ORTHO05D005228 8.6e-34 148.7 315 36.2
vmacro08776 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 1.1e-33 148.3 364 33.0
A05p08800 Brassica napus HOM05D004355 ORTHO05D005228 1.5e-33 147.9 310 36.5
HanXRQChr11g0350251 Helianthus annuus HOM05D004355 ORTHO05D005228 1.9e-33 147.5 310 35.8
Migut.L01688 Erythranthe guttata HOM05D004355 ORTHO05D005228 7.3e-33 145.6 311 34.1
THA.LOC104806491 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 1.2e-32 144.8 334 32.9
MSTRG.26701 Avicennia marina HOM05D004355 ORTHO05D005228 2.8e-32 143.7 310 34.2
HanXRQChr13g0399881 Helianthus annuus HOM05D004355 ORTHO05D005228 6.2e-32 142.5 312 34.9
EL10Ac7g16576 Beta vulgaris HOM05D004355 ORTHO05D005228 3.1e-31 140.2 286 36.4
unitig_899.g15220 Utricularia gibba HOM05D002910 ORTHO05D003235 6.8e-31 139.0 306 33.7
unitig_746.g26764 Utricularia gibba HOM05D004355 ORTHO05D005228 1.2e-30 138.3 311 32.5
vmacro20020 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 1.5e-30 137.9 321 35.2
Cc06_g04030 Coffea canephora HOM05D004355 ORTHO05D005228 1.7e-29 134.4 328 32.0
PGR004G2422 Punica granatum HOM05D004355 ORTHO05D005228 1.7e-29 134.4 305 34.8
Nn2g11520 Nelumbo nucifera HOM05D004355 ORTHO05D005228 3.7e-29 133.3 241 39.8
Lsat_1_v5_gn_6_31260 Lactuca sativa HOM05D004355 ORTHO05D005228 8.3e-29 132.1 291 35.7
Rhsim05G0179400 Rhododendron simsii HOM05D004355 ORTHO05D005228 3.2e-28 130.2 311 35.4
Sp4g19340 Schrenkiella parvula HOM05D004355 ORTHO05D005228 2.1e-27 127.5 322 33.9
Sabra16G0096600 Salix brachista HOM05D004355 ORTHO05D005228 3.5e-27 126.7 214 40.7
Migut.J00528 Erythranthe guttata HOM05D004355 ORTHO05D005228 1.0e-26 125.2 305 31.5
Actinidia19660 Actinidia chinensis HOM05D004355 ORTHO05D005228 3.0e-26 123.6 308 33.1
Dinv37299 Davidia involucrata HOM05D004355 ORTHO05D005228 1.5e-25 121.3 196 40.8
Lj2P114T36 Lonicera japonica HOM05D004355 ORTHO05D005228 1.9e-25 120.9 135 48.9
FAN14G0897 Fragaria x ananassa HOM05D004355 ORTHO05D005228 4.3e-25 119.8 120 52.5
FAN14G5907 Fragaria x ananassa HOM05D004355 ORTHO05D005228 4.3e-25 119.8 120 52.5
RcHm_v2.0_Chr3g0469941 Rosa chinensis HOM05D004355 ORTHO05D005228 9.5e-25 118.6 108 56.5
GSVIVG01025706001 Vitis vinifera HOM05D004355 ORTHO05D005228 8.1e-24 115.5 108 56.5
Eucgr.A01137 Eucalyptus grandis HOM05D004355 ORTHO05D005228 1.1e-23 115.2 128 50.0
Lsat_1_v5_gn_6_31300 Lactuca sativa HOM05D004355 ORTHO05D005228 1.4e-23 114.8 286 29.0
AUR62040465 Chenopodium quinoa HOM05D004355 ORTHO05D005228 2.4e-23 114.0 127 51.2
Rhsim04G0145100 Rhododendron simsii HOM05D004355 ORTHO05D005228 1.5e-22 111.3 431 27.1
VMungo0540G2091 Vigna mungo HOM05D004355 ORTHO05D005228 1.1e-20 105.1 108 51.9
Peaxi162Scf00123g01123 Petunia axillaris HOM05D004355 ORTHO05D005228 3.0e-18 97.1 317 30.3
MD12G1115900 Malus domestica HOM05D004355 ORTHO05D005228 3.3e-17 93.6 235 31.5
CiPaw.09G174200 Carya illinoinensis HOM05D004355 ORTHO05D005228 9.6e-17 92.0 313 29.7
ATR0048G009 Amborella trichopoda HOM05D004355 ORTHO05D005228 6.2e-16 89.4 301 27.9
Dinv23629 Davidia involucrata HOM05D004355 ORTHO05D005228 6.2e-16 89.4 220 31.8
Dinv34489 Davidia involucrata HOM05D004355 ORTHO05D005228 1.4e-15 88.2 218 31.7
Lsat_1_v5_gn_6_31200 Lactuca sativa HOM05D004355 ORTHO05D005228 1.9e-12 77.8 307 25.4
Os10g0478400 Oryza sativa ssp. japonica HOM05D004355 ORTHO05D005228 1.2e-11 75.1 276 29.7
BcaB02g09308 Brassica carinata HOM05D004355 ORTHO05D005228 6.0e-11 72.8 113 42.5
PSO801G0805 Papaver somniferum HOM05D004355 ORTHO05D005228 1.0e-10 72.0 139 35.3
Lsat_1_v5_gn_6_70860 Lactuca sativa HOM05D004355 ORTHO05D005228 3.9e-10 70.1 260 27.3
AL693U10010 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 5.6e-09 66.2 135 40.0
FAN03G0487 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.1e-07 62.0 113 37.2
Zm00001eb045770 Zea mays HOM05D004355 ORTHO05D005228 2.4e-07 60.8 116 36.2
Zm00001eb221710 Zea mays HOM05D004355 ORTHO05D005228 5.3e-07 59.7 116 35.3
FAN05G3868 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.6e-06 57.4 116 36.2


User provided reference genes

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