Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G2206 Ceratophyllum demersum HOM05D004065 ORTHO05D004806 0.0e+00 2114.3 1085 100.0
Nn2g10418 Nelumbo nucifera HOM05D004065 ORTHO05D004806 0.0e+00 1119.8 1146 54.8
TAR633G2080 Trochodendron aralioides HOM05D004065 ORTHO05D004806 0.0e+00 1119.8 1147 55.0
Manes.10G033000 Manihot esculenta HOM05D004065 ORTHO05D004806 1.8e-300 1036.2 1129 51.9
Hma1.2p1_0727F.1_g209200 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 6.7e-295 1017.7 1146 51.6
Dinv25990 Davidia involucrata HOM05D004065 ORTHO05D004806 1.6e-293 1013.1 1145 52.0
Aqoxy2G02042 Aquilegia oxysepala HOM05D004065 ORTHO05D004806 3.7e-293 1011.9 1152 51.1
PSO339G3310 Papaver somniferum HOM05D004065 ORTHO05D004806 4.0e-292 1008.4 1108 52.3
Potri.010G207900 Populus trichocarpa HOM05D004065 ORTHO05D004806 4.0e-292 1008.4 1147 50.4
Cfa001505 Carpinus fangiana HOM05D004065 ORTHO05D004806 2.9e-290 1002.3 1133 51.6
Potri.008G052700 Populus trichocarpa HOM05D004065 ORTHO05D004806 2.1e-288 996.1 1138 50.2
Thecc.10G046900 Theobroma cacao HOM05D004065 ORTHO05D004806 2.7e-288 995.7 1150 50.2
GSVIVG01016585001 Vitis vinifera HOM05D004065 ORTHO05D004806 5.1e-287 991.5 1135 50.7
Atru.chr12.508 Acer truncatum HOM05D004065 ORTHO05D004806 1.1e-286 990.3 1180 49.1
Dinv31435 Davidia involucrata HOM05D004065 ORTHO05D004806 1.1e-286 990.3 1142 51.0
BNapus_Darmor_BZH_scaffold_149p00120 Brassica napus HOM05D004065 ORTHO05D004806 3.3e-286 988.8 1140 51.1
BraA01t04124Z Brassica rapa HOM05D004065 ORTHO05D004806 3.3e-286 988.8 1140 51.1
TWI15G0503 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 9.6e-286 987.3 1143 50.2
BolC1t05197H Brassica oleracea HOM05D004065 ORTHO05D004806 1.4e-284 983.4 1146 50.3
C01p52580 Brassica napus HOM05D004065 ORTHO05D004806 1.8e-284 983.0 1146 50.3
TWI38G1478 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 3.1e-284 982.2 1143 50.1
BcaB04g21060 Brassica carinata HOM05D004065 ORTHO05D004806 4.1e-284 981.9 1145 50.3
Eucgr.G02920 Eucalyptus grandis HOM05D004065 ORTHO05D004806 4.1e-284 981.9 1131 51.2
CsaV3_5G008100 Cucumis sativus L. HOM05D004065 ORTHO05D004806 6.9e-284 981.1 1138 49.7
FAN10G0299 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.2e-283 980.3 1152 49.1
THA.LOC104799352 Tarenaya hassleriana HOM05D004065 ORTHO05D004806 1.2e-283 980.3 1132 50.4
Sed0019555 Sechium edule HOM05D004065 ORTHO05D004806 1.5e-283 979.9 1128 49.8
FvH4_7g21970 Fragaria vesca HOM05D004065 ORTHO05D004806 2.6e-283 979.2 1135 49.5
Gorai.011G255800 Gossypium raimondii HOM05D004065 ORTHO05D004806 1.3e-282 976.9 1151 49.9
CSS0036524 Camellia sinensis var. sinensis HOM05D004065 ORTHO05D004806 5.0e-282 974.9 1132 49.5
Duzib114G0580 Durio zibethinus HOM05D004065 ORTHO05D004806 5.0e-282 974.9 1178 48.5
CANSAT56G4002 Cannabis sativa HOM05D004065 ORTHO05D004806 1.4e-281 973.4 1148 48.9
FAN06G3757 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.4e-281 973.4 1151 48.9
Cc02_g08160 Coffea canephora HOM05D004065 ORTHO05D004806 4.2e-281 971.8 1141 49.3
Gorai.012G069700 Gossypium raimondii HOM05D004065 ORTHO05D004806 4.2e-281 971.8 1152 49.1
Thhalv10019927m.g Eutrema salsugineum HOM05D004065 ORTHO05D004806 5.5e-281 971.5 1134 49.6
Duzib106G1820 Durio zibethinus HOM05D004065 ORTHO05D004806 9.3e-281 970.7 1134 49.0
Gohir.D04G062400 Gossypium hirsutum HOM05D004065 ORTHO05D004806 1.2e-280 970.3 1154 49.0
HanXRQChr07g0201231 Helianthus annuus HOM05D004065 ORTHO05D004806 1.2e-280 970.3 1135 50.7
Gohir.D10G224800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 2.1e-280 969.5 1161 49.4
MELO3C023859.2 Cucumis melo HOM05D004065 ORTHO05D004806 4.6e-280 968.4 1126 49.6
RcHm_v2.0_Chr1g0366301 Rosa chinensis HOM05D004065 ORTHO05D004806 4.6e-280 968.4 1101 51.2
FAN06G3343 Fragaria x ananassa HOM05D004065 ORTHO05D004806 6.1e-280 968.0 1152 48.7
Gohir.A10G215800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 1.0e-279 967.2 1152 49.0
Lsat_1_v5_gn_2_117761 Lactuca sativa HOM05D004065 ORTHO05D004806 1.0e-279 967.2 1148 50.5
FAN01G1867 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.0e-279 965.7 1152 48.7
Aa31LG3G60 Aethionema arabicum HOM05D004065 ORTHO05D004806 3.9e-279 965.3 1138 49.8
AT3G12590 Arabidopsis thaliana HOM05D004065 ORTHO05D004806 2.5e-278 962.6 1131 49.2
AL3G24260 Arabidopsis lyrata HOM05D004065 ORTHO05D004806 4.3e-278 961.8 1134 49.2
Haze_17038 Corylus avellana HOM05D004065 ORTHO05D004806 5.7e-278 961.4 1151 49.3
ECA238G1619 Erigeron canadensis HOM05D004065 ORTHO05D004806 2.8e-277 959.1 1140 50.4
Sopen06g010560 Solanum pennellii HOM05D004065 ORTHO05D004806 1.1e-276 957.2 1123 49.4
Carub.0003s1194 Capsella rubella HOM05D004065 ORTHO05D004806 2.4e-276 956.1 1138 49.2
FAN03G1397 Fragaria x ananassa HOM05D004065 ORTHO05D004806 9.0e-276 954.1 1101 49.5
Sabra10G0160500 Salix brachista HOM05D004065 ORTHO05D004806 4.5e-275 951.8 1147 48.4
Prupe.2G231600 Prunus persica HOM05D004065 ORTHO05D004806 7.7e-275 951.0 1103 50.5
CARHR087100 Cardamine hirsuta HOM05D004065 ORTHO05D004806 1.0e-274 950.7 1131 48.9
Ciclev10030542m.g Citrus clementina HOM05D004065 ORTHO05D004806 3.8e-274 948.7 1151 49.4
CiPaw.01G284400 Carya illinoinensis HOM05D004065 ORTHO05D004806 8.5e-274 947.6 1109 49.8
MD01G1124000 Malus domestica HOM05D004065 ORTHO05D004806 1.1e-273 947.2 1109 50.9
MD07G1194200 Malus domestica HOM05D004065 ORTHO05D004806 9.4e-273 944.1 1100 51.3
Migut.F01518 Erythranthe guttata HOM05D004065 ORTHO05D004806 2.5e-270 936.0 1144 47.5
Glyma.02G093600 Glycine max HOM05D004065 ORTHO05D004806 3.3e-270 935.6 1140 48.4
MSTRG.8235 Avicennia marina HOM05D004065 ORTHO05D004806 9.7e-270 934.1 1139 48.0
Sp3g10730 Schrenkiella parvula HOM05D004065 ORTHO05D004806 9.7e-270 934.1 1097 49.2
Lalb_Chr04g0257821 Lupinus albus HOM05D004065 ORTHO05D004806 8.2e-269 931.0 1145 48.6
Lj1g0007112 Lotus japonicus HOM05D004065 ORTHO05D004806 1.4e-268 930.2 1145 48.0
BraA03t12924Z Brassica rapa HOM05D004065 ORTHO05D004806 2.4e-268 929.5 1117 48.9
Phvul.008G013500 Phaseolus vulgaris HOM05D004065 ORTHO05D004806 2.6e-267 926.0 1141 48.4
A03p37690 Brassica napus HOM05D000062 ORTHO05D004806 3.4e-267 925.6 1124 48.7
Ca_07234_v3 Cicer arietinum L. HOM05D004065 ORTHO05D004806 1.7e-266 923.3 1151 48.3
Psat3g180760 Pisum sativum HOM05D004065 ORTHO05D004806 2.2e-266 922.9 1141 48.5
Medtr7g024190 Medicago truncatula HOM05D004065 ORTHO05D004806 3.8e-266 922.2 1152 48.3
TPR.G15495 Trifolium pratense HOM05D004065 ORTHO05D004806 1.1e-265 920.6 1129 48.9
PGR142G1305 Punica granatum HOM05D004065 ORTHO05D004806 3.2e-265 919.1 1090 48.3
DCAR_019167 Daucus carota HOM05D004065 ORTHO05D004806 2.1e-264 916.4 1142 47.5
LjContig00357g0027530 Lotus japonicus HOM05D004065 ORTHO05D004806 2.6e-262 909.4 1148 47.4
Gohir.A05G350100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 4.4e-262 908.7 1135 48.2
Glyma.20G099500 Glycine max HOM05D004065 ORTHO05D004806 1.3e-261 907.1 1142 46.9
C03p45740 Brassica napus HOM05D000062 ORTHO05D004806 9.1e-260 901.0 1082 48.4
Glyma.10G289700 Glycine max HOM05D004065 ORTHO05D004806 2.6e-259 899.4 1142 46.8
BcaC01g04018 Brassica carinata HOM05D004065 ORTHO05D004806 1.3e-258 897.1 1094 48.7
arahy.Tifrunner.gnm1.ann1.P8VZLW Arachis hypogaea HOM05D004065 ORTHO05D004806 2.9e-258 896.0 1131 47.3
arahy.Tifrunner.gnm1.ann1.XU51RJ Arachis hypogaea HOM05D004065 ORTHO05D004806 2.9e-258 896.0 1131 47.3
Rhsim09G0164300 Rhododendron simsii HOM05D004065 ORTHO05D004806 3.2e-257 892.5 1281 44.8
SGA_v2.0_scaffold2G00996 Striga asiatica HOM05D004065 ORTHO05D004806 9.4e-257 891.0 1133 46.4
AUR62038371 Chenopodium quinoa HOM05D004065 ORTHO05D004806 6.1e-256 888.3 1152 46.0
ATR0559G344 Amborella trichopoda HOM05D004065 ORTHO05D004806 1.0e-255 887.5 1148 46.3
ClCG07G003370 Citrullus lanatus HOM05D004065 ORTHO05D004806 8.8e-255 884.4 1325 42.1
DCAR_015196 Daucus carota HOM05D004065 ORTHO05D004806 3.1e-252 875.9 1095 47.1
Nitab4.5_0001836g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 5.3e-252 875.2 1022 49.8
SalBow6G0580 Salvia bowleyana HOM05D004065 ORTHO05D004806 9.1e-252 874.4 1179 45.8
Lalb_Chr06g0164301 Lupinus albus HOM05D004065 ORTHO05D004806 2.9e-250 869.4 1140 46.9
COL.COLO4_14967 Corchorus olitorius HOM05D004065 ORTHO05D004806 5.0e-250 868.6 1091 47.1
EL10Ac2g03418 Beta vulgaris HOM05D004065 ORTHO05D004806 6.1e-248 861.7 1128 45.5
unitig_26.g10019 Utricularia gibba HOM05D004065 ORTHO05D004806 6.3e-245 851.7 1081 45.8
HPP92_003382 Vanilla planifolia HOM05D004065 ORTHO05D004806 2.7e-243 846.3 1138 46.9
Oeu016023.5 Olea europaea HOM05D004065 ORTHO05D004806 9.2e-236 821.2 1036 46.4
AUR62040961 Chenopodium quinoa HOM05D004065 ORTHO05D004806 1.9e-233 813.5 1062 46.0
SEGI_35631 Sequoiadendron giganteum HOM05D004065 ORTHO05D004806 4.9e-229 798.9 1167 43.5
BcaB04g21053 Brassica carinata HOM05D004065 ORTHO05D004806 3.6e-224 782.7 1147 44.2
Lj8C86G13 Lonicera japonica HOM05D004065 ORTHO05D004806 5.4e-220 768.8 1114 43.9
Sc20g0002620 Simmondsia chinensis HOM05D004065 ORTHO05D004806 9.8e-214 748.0 956 46.3
QL08p059042 Quercus lobata HOM05D004065 ORTHO05D004806 6.4e-213 745.3 769 55.0
Zm00001eb139750 Zea mays HOM05D004065 ORTHO05D004806 4.6e-211 739.2 886 48.6
Glyma.18G288500 Glycine max HOM05D004065 ORTHO05D004806 2.1e-187 660.6 1116 40.0
Actinidia13867 Actinidia chinensis HOM05D004065 ORTHO05D004806 4.5e-182 642.9 747 50.9
Mapoly0126s0012 Marchantia polymorpha HOM05D004065 ORTHO05D004806 6.4e-181 639.0 1195 37.2
Psat6g236120 Pisum sativum HOM05D004065 ORTHO05D004806 1.5e-169 601.3 689 47.8
CiPaw.02G182500 Carya illinoinensis HOM05D004065 ORTHO05D004806 3.2e-164 583.6 678 49.1
Pp3c24_6470 Physcomitrium patens HOM05D004065 ORTHO05D004806 1.2e-163 581.6 1196 35.3
FAN06G3693 Fragaria x ananassa HOM05D004065 ORTHO05D004806 6.1e-163 579.3 609 52.7
Hund20020 Selenicereus undatus HOM05D004065 ORTHO05D004806 6.3e-160 569.3 663 48.4
SMO146G0347 Selaginella moellendorffii HOM05D004065 ORTHO05D004806 1.5e-158 564.7 1109 36.4
AagrBONN_evm.TU.Sc2ySwM_344.343 Anthoceros agrestis HOM05D004065 ORTHO05D004806 5.9e-158 562.8 1100 36.4
Solyc06g042950.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 1.1e-153 548.5 586 50.9
Peaxi162Scf00658g00731 Petunia axillaris HOM05D004065 ORTHO05D004806 6.5e-149 532.7 568 51.2
BolC3t16849H Brassica oleracea HOM05D004065 ORTHO05D004806 2.0e-142 511.1 648 47.8
BcaB04g21068 Brassica carinata HOM05D004065 ORTHO05D004806 1.7e-141 508.1 619 48.3
Actinidia29212 Actinidia chinensis HOM05D004065 ORTHO05D004806 4.7e-139 500.0 578 49.5
Cpa.g.sc1437.1 Carica papaya HOM05D004065 ORTHO05D004806 5.9e-134 483.0 535 50.7
Nitab4.5_0005137g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 4.4e-121 440.3 517 48.0
CBR_g54636 Chara braunii HOM05D004065 ORTHO05D004806 1.5e-100 372.1 1470 26.3
Nitab4.5_0005137g0010 Nicotiana tabacum HOM05D004065 ORTHO05D004806 1.2e-94 352.4 456 48.5
Solyc06g042960.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 1.0e-93 349.4 456 47.6
Peaxi162Scf00658g00725 Petunia axillaris HOM05D004065 ORTHO05D004806 5.4e-87 327.0 425 48.0
SHI22587 Sapria himalayana HOM05D004065 ORTHO05D004806 9.6e-76 289.7 402 44.3
SHI22586 Sapria himalayana HOM05D004065 ORTHO05D004806 3.5e-62 244.6 386 39.6
Cpa.g.sc1.377 Carica papaya HOM05D004065 ORTHO05D004806 1.0e-61 243.0 371 42.3
QL08p059051 Quercus lobata HOM05D004065 ORTHO05D004806 2.1e-59 235.3 389 39.8
CiPaw.02G182400 Carya illinoinensis HOM05D004065 ORTHO05D004806 1.6e-54 219.2 191 62.3
BolC8t48103H Brassica oleracea HOM05D004065 ORTHO05D004806 3.9e-53 214.5 300 43.3
Os01g0974300 Oryza sativa ssp. japonica HOM05D004065 ORTHO05D004806 1.4e-47 196.1 180 53.3
Psat6g236080 Pisum sativum HOM05D004065 ORTHO05D004806 6.7e-45 187.2 359 37.9
Nn8g40630 Nelumbo nucifera HOM05D004065 ORTHO05D004806 1.4e-42 179.5 240 45.0
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 9.1e-42 176.8 379 34.6
FAN06G4849 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.6e-41 175.3 401 32.7
Ah.16g107250 Amaranthus hybridus HOM05D004065 ORTHO05D004806 3.9e-37 161.4 445 30.1
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.1e-34 153.3 356 34.0
Oeu012240.1 Olea europaea HOM05D004065 ORTHO05D004806 7.7e-33 147.1 165 49.1
Hma1.2p1_1137F.1_g260730 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 1.0e-32 146.7 202 44.6
FAN18G1692 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.9e-31 142.5 228 38.6
MBI05_g10364_MAGBIO Magnolia biondii HOM05D004065 ORTHO05D004806 5.5e-31 141.0 114 58.8
FAN14G4766 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.6e-30 139.4 224 38.8
FAN03G2077 Fragaria x ananassa HOM05D004065 ORTHO05D004806 4.7e-30 137.9 208 39.4
FAN25G3689 Fragaria x ananassa HOM05D004065 ORTHO05D004806 8.8e-29 133.7 205 38.5
FvH4_7g22002 Fragaria vesca HOM05D004065 ORTHO05D004806 1.0e-24 120.2 78 74.4
Hma1.2p1_0067F.1_g037070 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 3.8e-24 118.2 166 45.8
FAN11G1748 Fragaria x ananassa HOM05D004065 ORTHO05D004806 6.5e-24 117.5 146 41.8
FAN06G1862 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.1e-23 116.7 134 42.5
FAN08G2500 Fragaria x ananassa HOM05D000391 ORTHO05D000293 4.2e-23 114.8 127 44.1
FvH4_7g26620 Fragaria vesca HOM05D004065 ORTHO05D004806 2.1e-22 112.5 130 43.1
FAN01G2840 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.3e-21 109.0 131 51.9
FAN01G0794 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.0e-17 95.9 162 40.7
AagrBONN_evm.TU.Sc2ySwM_344.348 Anthoceros agrestis HOM05D004065 ORTHO05D004806 2.7e-17 95.5 239 34.3
Nitab4.5_0005137g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 1.3e-16 93.2 82 59.8
FAN25G3365 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.9e-16 92.0 111 39.6
Nitab4.5_0001836g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 6.5e-16 90.9 82 58.5
FAN03G1547 Fragaria x ananassa HOM05D004065 ORTHO05D004806 7.2e-15 87.4 121 42.1
arahy.Tifrunner.gnm1.ann1.JMTW06 Arachis hypogaea HOM05D004065 ORTHO05D004806 1.4e-13 83.2 62 69.4
AagrBONN_evm.TU.Sc2ySwM_344.349 Anthoceros agrestis HOM05D004065 ORTHO05D004806 2.6e-12 79.0 190 29.5
Solyc06g042980.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 4.8e-11 74.7 63 60.3
Peaxi162Scf00658g00733 Petunia axillaris HOM05D004065 ORTHO05D004806 2.5e-07 62.4 77 48.1
Zm00001eb362160 Zea mays HOM05D008199 ORTHO05D010334 7.2e-07 60.8 127 41.7


User provided reference genes

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