Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G2134 Ceratophyllum demersum HOM05D007692 ORTHO05D009696 5.9e-81 304.3 170 100.0
Nn2g12400 Nelumbo nucifera HOM05D007692 ORTHO05D009696 4.0e-21 105.5 107 53.3
MBI13_g42817_MAGBIO Magnolia biondii HOM05D007692 ORTHO05D009696 7.6e-20 101.3 109 51.4
Sabra06G0170400 Salix brachista HOM05D007692 ORTHO05D009696 6.4e-19 98.2 107 47.7
Prupe.1G403900 Prunus persica HOM05D007692 ORTHO05D009696 1.4e-18 97.1 108 50.0
Potri.006G220500 Populus trichocarpa HOM05D007692 ORTHO05D009696 2.4e-18 96.3 107 46.7
Zm00001eb005780 Zea mays HOM05D007692 ORTHO05D009696 2.4e-18 96.3 107 51.4
MD15G1049600 Malus domestica HOM05D007692 ORTHO05D009696 3.2e-18 95.9 108 50.0
Lj5g0021751 Lotus japonicus HOM05D007692 ORTHO05D009696 7.1e-18 94.7 106 50.0
RcHm_v2.0_Chr6g0311901 Rosa chinensis HOM05D007692 ORTHO05D009696 7.1e-18 94.7 106 50.0
HPP92_004156 Vanilla planifolia HOM05D007692 ORTHO05D009696 9.3e-18 94.4 110 47.3
Haze_18297 Corylus avellana HOM05D007692 ORTHO05D009696 2.1e-17 93.2 106 49.1
FvH4_2g30960 Fragaria vesca HOM05D007692 ORTHO05D009696 2.1e-17 93.2 106 49.1
TAR624G0897 Trochodendron aralioides HOM05D007692 ORTHO05D009696 3.5e-17 92.4 108 46.3
PSO541G2080 Papaver somniferum HOM05D007692 ORTHO05D009696 4.6e-17 92.0 108 44.4
VMungo0647G2522 Vigna mungo HOM05D007692 ORTHO05D009696 4.6e-17 92.0 110 49.1
arahy.Tifrunner.gnm1.ann1.0E4SK3 Arachis hypogaea HOM05D007692 ORTHO05D009696 7.8e-17 91.3 106 48.1
CiPaw.15G091700 Carya illinoinensis HOM05D007692 ORTHO05D009696 7.8e-17 91.3 110 50.0
Medtr1g015470 Medicago truncatula HOM05D007692 ORTHO05D009696 7.8e-17 91.3 106 46.2
Nn8g39911 Nelumbo nucifera HOM05D007692 ORTHO05D009696 7.8e-17 91.3 107 49.5
Eucgr.C00729 Eucalyptus grandis HOM05D007692 ORTHO05D009696 1.0e-16 90.9 111 49.5
Os03g0176900 Oryza sativa ssp. japonica HOM05D007692 ORTHO05D009696 1.7e-16 90.1 108 48.1
PSO675G1902 Papaver somniferum HOM05D007692 ORTHO05D009696 1.7e-16 90.1 108 43.5
QL02p017055 Quercus lobata HOM05D007692 ORTHO05D009696 1.7e-16 90.1 107 48.6
TPR.G38893 Trifolium pratense HOM05D007692 ORTHO05D009696 1.7e-16 90.1 106 46.2
COL.COLO4_21142 Corchorus olitorius HOM05D007692 ORTHO05D009696 3.0e-16 89.4 128 42.2
TWI63G1278 Tripterygium wilfordii HOM05D007692 ORTHO05D009696 3.0e-16 89.4 109 48.6
MD08G1071600 Malus domestica HOM05D007692 ORTHO05D009696 3.9e-16 89.0 108 48.1
QL02p017043 Quercus lobata HOM05D007692 ORTHO05D009696 3.9e-16 89.0 108 48.1
Aqoxy2G03896 Aquilegia oxysepala HOM05D007692 ORTHO05D009696 5.1e-16 88.6 108 43.5
Nitab4.5_0008422g0010 Nicotiana tabacum HOM05D007692 ORTHO05D009696 6.6e-16 88.2 115 45.2
Solyc08g061640.1 Solanum lycopersicum HOM05D007692 ORTHO05D009696 6.6e-16 88.2 114 47.4
Sopen08g017100 Solanum pennellii HOM05D007692 ORTHO05D009696 6.6e-16 88.2 114 47.4
PGSC0003DMG400045083 Solanum tuberosum HOM05D007692 ORTHO05D009696 6.6e-16 88.2 114 47.4
EL10Ac2g03778 Beta vulgaris HOM05D007692 ORTHO05D009696 8.7e-16 87.8 107 47.7
CAN.G567.82 Capsicum annuum HOM05D007692 ORTHO05D009696 1.1e-15 87.4 114 47.4
Cfa017868 Carpinus fangiana HOM05D007692 ORTHO05D009696 1.1e-15 87.4 106 48.1
Peaxi162Scf00486g00102 Petunia axillaris HOM05D007692 ORTHO05D009696 1.5e-15 87.0 104 48.1
Psat6g022960 Pisum sativum HOM05D007692 ORTHO05D009696 1.5e-15 87.0 106 45.3
PGR031G0311 Punica granatum HOM05D007692 ORTHO05D009696 1.5e-15 87.0 108 47.2
ATR0598G206 Amborella trichopoda HOM05D007692 ORTHO05D009696 1.9e-15 86.7 108 49.1
Dinv22937 Davidia involucrata HOM05D007692 ORTHO05D009696 2.5e-15 86.3 122 42.6
TPR.G3568 Trifolium pratense HOM05D007692 ORTHO05D009696 4.3e-15 85.5 103 47.6
Nitab4.5_0000446g0120 Nicotiana tabacum HOM05D007692 ORTHO05D009696 5.6e-15 85.1 115 43.5
Glyma.17G225900 Glycine max HOM05D007692 ORTHO05D009696 7.3e-15 84.7 112 43.8
Duzib168G1711 Durio zibethinus HOM05D007692 ORTHO05D009696 9.6e-15 84.3 107 46.7
Thecc.09G063700 Theobroma cacao HOM05D007692 ORTHO05D009696 1.6e-14 83.6 110 45.5
DCAR_001232 Daucus carota HOM05D006390 ORTHO05D007899 2.1e-14 83.2 107 43.0
Manes.16G085800 Manihot esculenta HOM05D007692 ORTHO05D009696 2.1e-14 83.2 106 43.4
Glyma.06G056100 Glycine max HOM05D007692 ORTHO05D009696 2.8e-14 82.8 106 50.9
Hma1.2p1_0278F.1_g111850 Hydrangea macrophylla HOM05D007692 ORTHO05D009696 3.6e-14 82.4 105 43.8
Phvul.001G038600 Phaseolus vulgaris HOM05D007692 ORTHO05D009696 3.6e-14 82.4 97 49.5
CANSAT25G1329 Cannabis sativa HOM05D007692 ORTHO05D009696 4.8e-14 82.0 111 42.3
Lsat_1_v5_gn_7_58320 Lactuca sativa HOM05D006390 ORTHO05D007899 4.8e-14 82.0 102 44.1
VMungo1309G1304 Vigna mungo HOM05D007692 ORTHO05D009696 1.1e-13 80.9 106 50.0
MELO3C016914.2 Cucumis melo HOM05D007692 ORTHO05D009696 1.8e-13 80.1 113 43.4
CsaV3_4G036060 Cucumis sativus L. HOM05D007692 ORTHO05D009696 1.8e-13 80.1 113 43.4
Gohir.D05G040100 Gossypium hirsutum HOM05D007692 ORTHO05D009696 1.8e-13 80.1 106 42.5
Gorai.009G040500 Gossypium raimondii HOM05D007692 ORTHO05D009696 1.8e-13 80.1 106 42.5
Cpa.g.sc126.21 Carica papaya HOM05D007692 ORTHO05D009696 3.1e-13 79.3 107 45.8
ClCG05G015760 Citrullus lanatus HOM05D007692 ORTHO05D009696 3.1e-13 79.3 113 45.1
Phvul.009G082200 Phaseolus vulgaris HOM05D007692 ORTHO05D009696 3.1e-13 79.3 107 47.7
SGA_v2.0_scaffold20G09157 Striga asiatica HOM05D006390 ORTHO05D007899 3.1e-13 79.3 106 40.6
THA.LOC104810956 Tarenaya hassleriana HOM05D007692 ORTHO05D009696 3.1e-13 79.3 105 41.9
ECA240G2866 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.0e-13 79.0 102 46.1
Ciclev10010178m.g Citrus clementina HOM05D007692 ORTHO05D009696 5.3e-13 78.6 106 45.3
Oeu003971.1 Olea europaea HOM05D007692 ORTHO05D009696 5.3e-13 78.6 102 46.1
Ah.11g044290 Amaranthus hybridus HOM05D007692 ORTHO05D009696 1.5e-12 77.0 110 45.5
Gohir.A05G038600 Gossypium hirsutum HOM05D007692 ORTHO05D009696 3.4e-12 75.9 106 42.5
Medtr3g105090 Medicago truncatula HOM05D007692 ORTHO05D009696 3.4e-12 75.9 105 43.8
Sed0007061 Sechium edule HOM05D007692 ORTHO05D009696 1.3e-11 73.9 115 41.7
Sc06g0001120 Simmondsia chinensis HOM05D007692 ORTHO05D009696 1.3e-11 73.9 106 39.6
Lalb_Chr11g0063341 Lupinus albus HOM05D007692 ORTHO05D009696 4.9e-11 72.0 106 41.5
SalBow4G0926 Salvia bowleyana HOM05D007692 ORTHO05D009696 1.4e-10 70.5 103 38.8
A10p18810 Brassica napus HOM05D007692 ORTHO05D009696 5.4e-10 68.6 107 37.4
C09p54830 Brassica napus HOM05D007692 ORTHO05D009696 5.4e-10 68.6 107 37.4
BolC9t58343H Brassica oleracea HOM05D007692 ORTHO05D009696 5.4e-10 68.6 107 37.4
BraA10t43961Z Brassica rapa HOM05D007692 ORTHO05D009696 5.4e-10 68.6 107 37.4
Medtr1g015490 Medicago truncatula HOM05D007692 ORTHO05D009696 9.3e-10 67.8 84 42.9
HanXRQChr03g0065641 Helianthus annuus HOM05D007692 ORTHO05D009696 2.1e-09 66.6 104 40.4
unitig_32.g11527 Utricularia gibba HOM05D007692 ORTHO05D009696 2.1e-09 66.6 104 36.5
BcaB08g36470 Brassica carinata HOM05D007692 ORTHO05D009696 2.7e-09 66.2 107 36.4
Psat5g030520 Pisum sativum HOM05D007692 ORTHO05D009696 3.5e-09 65.9 84 45.2
CSS0041722 Camellia sinensis var. sinensis HOM05D007692 ORTHO05D009696 7.9e-09 64.7 103 40.8
CARHR191630 Cardamine hirsuta HOM05D007692 ORTHO05D009696 1.0e-08 64.3 106 36.8
Thhalv10015977m.g Eutrema salsugineum HOM05D007692 ORTHO05D009696 1.3e-08 63.9 107 35.5
Psat6g004480 Pisum sativum HOM05D007692 ORTHO05D009696 1.9e-07 60.1 58 51.7
Cc08_g01120 Coffea canephora HOM05D007692 ORTHO05D009696 4.8e-06 55.5 108 33.3


User provided reference genes

Program Settings