Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G2042 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 0.0e+00 1104.7 548 100.0
CDE06G0261 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 4.5e-207 724.9 459 82.1
COL.COLO4_11363 Corchorus olitorius HOM05D005552 ORTHO05D006743 6.5e-190 667.9 551 60.6
Thecc.01G050800 Theobroma cacao HOM05D005552 ORTHO05D006743 8.5e-190 667.5 551 59.5
Gohir.D11G196500 Gossypium hirsutum HOM05D005552 ORTHO05D006743 5.5e-189 664.8 551 59.9
Gorai.007G210400 Gossypium raimondii HOM05D005552 ORTHO05D006743 1.0e-187 660.6 551 59.5
PSO541G0461 Papaver somniferum HOM05D005552 ORTHO05D006743 5.2e-187 658.3 546 60.6
Cc02_g34610 Coffea canephora HOM05D005552 ORTHO05D006743 8.8e-187 657.5 554 60.8
PSO675G7200 Papaver somniferum HOM05D005552 ORTHO05D006743 7.5e-186 654.4 546 60.4
Aqoxy6G00889 Aquilegia oxysepala HOM05D005552 ORTHO05D006743 1.7e-185 653.3 545 60.6
GSVIVG01003549001 Vitis vinifera HOM05D005552 ORTHO05D006743 1.6e-183 646.7 553 59.1
Duzib264G1173 Durio zibethinus HOM05D005552 ORTHO05D006743 4.5e-183 645.2 551 59.2
Dinv39890 Davidia involucrata HOM05D005552 ORTHO05D006743 1.0e-182 644.0 552 59.2
Cpa.g.sc6.396 Carica papaya HOM05D005552 ORTHO05D006743 1.5e-181 640.2 547 59.4
vmacro21371 Vaccinium macrocarpon HOM05D005552 ORTHO05D006743 1.8e-179 633.3 551 58.1
ATR0767G265 Amborella trichopoda HOM05D005552 ORTHO05D006743 2.3e-179 632.9 553 59.0
Sopen01g043680 Solanum pennellii HOM05D005552 ORTHO05D006743 4.0e-179 632.1 552 58.2
FAN28G0665 Fragaria x ananassa HOM05D005552 ORTHO05D006743 6.8e-179 631.3 553 58.2
FAN26G2590 Fragaria x ananassa HOM05D005552 ORTHO05D006743 2.0e-178 629.8 553 58.2
Potri.001G361900 Populus trichocarpa HOM05D005552 ORTHO05D006743 2.6e-178 629.4 554 58.3
Ciclev10025258m.g Citrus clementina HOM05D005552 ORTHO05D006743 3.4e-178 629.0 552 57.1
MD15G1279300 Malus domestica HOM05D005552 ORTHO05D006743 5.7e-178 628.2 556 56.7
Oeu020899.1 Olea europaea HOM05D005552 ORTHO05D006743 7.5e-178 627.9 550 58.2
Actinidia12065 Actinidia chinensis HOM05D005552 ORTHO05D006743 9.8e-178 627.5 552 58.3
CiPaw.01G023200 Carya illinoinensis HOM05D005552 ORTHO05D006743 2.8e-177 625.9 552 57.6
Solyc01g100190.4 Solanum lycopersicum HOM05D005552 ORTHO05D006743 6.3e-177 624.8 552 57.4
CAN.G1273.15 Capsicum annuum HOM05D005552 ORTHO05D006743 1.1e-176 624.0 552 58.2
Prupe.7G138000 Prunus persica HOM05D005552 ORTHO05D006743 1.4e-176 623.6 553 58.2
FvH4_1g15480 Fragaria vesca HOM05D005552 ORTHO05D006743 2.4e-176 622.9 553 57.5
TPR.G11337 Trifolium pratense HOM05D005552 ORTHO05D006743 2.4e-176 622.9 547 58.0
arahy.Tifrunner.gnm1.ann1.21BGDZ Arachis hypogaea HOM05D005552 ORTHO05D006743 3.2e-176 622.5 551 57.5
Cfa003976 Carpinus fangiana HOM05D005552 ORTHO05D006743 3.2e-176 622.5 552 58.0
FAN19G0212 Fragaria x ananassa HOM05D005552 ORTHO05D006743 4.1e-176 622.1 553 57.3
PGSC0003DMG400024733 Solanum tuberosum HOM05D005552 ORTHO05D006743 2.0e-175 619.8 552 58.2
TWI09G0520 Tripterygium wilfordii HOM05D005552 ORTHO05D006743 1.3e-174 617.1 550 56.2
RcHm_v2.0_Chr2g0104711 Rosa chinensis HOM05D005552 ORTHO05D006743 2.3e-174 616.3 553 56.6
Lj4C139G4 Lonicera japonica HOM05D005552 ORTHO05D006743 3.9e-174 615.5 551 57.2
ECA232G0422 Erigeron canadensis HOM05D005552 ORTHO05D006743 3.3e-173 612.5 553 57.0
THA.LOC104807572 Tarenaya hassleriana HOM05D005552 ORTHO05D006743 3.3e-173 612.5 546 56.4
Haze_15444 Corylus avellana HOM05D005552 ORTHO05D006743 5.6e-173 611.7 563 56.5
QL06p042750 Quercus lobata HOM05D005552 ORTHO05D006743 7.3e-173 611.3 551 56.8
MSTRG.5133 Avicennia marina HOM05D005552 ORTHO05D006743 2.8e-172 609.4 553 57.9
Ca_24792_v3 Cicer arietinum L. HOM05D005552 ORTHO05D006743 2.8e-172 609.4 550 57.1
PGR119G0642 Punica granatum HOM05D005552 ORTHO05D006743 8.0e-172 607.8 546 55.5
CANSAT64G0631 Cannabis sativa HOM05D005552 ORTHO05D006743 1.4e-171 607.1 550 56.4
Glyma.01G183800 Glycine max HOM05D005552 ORTHO05D006743 6.8e-171 604.7 570 54.9
CSS0032711 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 1.2e-170 604.0 552 57.2
Psat2g165040 Pisum sativum HOM05D005552 ORTHO05D006743 1.5e-170 603.6 552 57.1
Glyma.11G058500 Glycine max HOM05D005552 ORTHO05D006743 2.0e-170 603.2 551 56.6
Lj6g0016933 Lotus japonicus HOM05D005552 ORTHO05D006743 2.0e-170 603.2 552 56.3
Rhsim01G0119100 Rhododendron simsii HOM05D005552 ORTHO05D006743 2.0e-170 603.2 552 56.2
Sed0018600 Sechium edule HOM05D005552 ORTHO05D006743 3.4e-170 602.4 546 56.6
Sc16g0001610 Simmondsia chinensis HOM05D005552 ORTHO05D006743 4.4e-170 602.1 549 55.9
MD02G1166800 Malus domestica HOM05D005552 ORTHO05D006743 1.3e-169 600.5 548 55.8
VMungo1215G1500 Vigna mungo HOM05D005552 ORTHO05D006743 6.4e-169 598.2 549 56.5
MELO3C007542.2 Cucumis melo HOM05D005552 ORTHO05D006743 1.1e-168 597.4 545 55.4
Eucgr.I00976 Eucalyptus grandis HOM05D005552 ORTHO05D006743 1.9e-168 596.7 545 55.8
Nitab4.5_0002715g0120 Nicotiana tabacum HOM05D005552 ORTHO05D006743 1.9e-168 596.7 581 54.9
HanXRQChr14g0430701 Helianthus annuus HOM05D005552 ORTHO05D006743 7.0e-168 594.7 549 55.4
AUR62003843 Chenopodium quinoa HOM05D005552 ORTHO05D006743 1.2e-167 594.0 549 55.6
Lj2g0010083 Lotus japonicus HOM05D005552 ORTHO05D006743 2.0e-167 593.2 551 55.5
Lalb_Chr05g0213171 Lupinus albus HOM05D005552 ORTHO05D006743 1.3e-166 590.5 551 56.3
Medtr5g017970 Medicago truncatula HOM05D005552 ORTHO05D006743 5.0e-166 588.6 547 56.5
AUR62001963 Chenopodium quinoa HOM05D005552 ORTHO05D006743 8.6e-166 587.8 549 55.2
Hund16313 Selenicereus undatus HOM05D005552 ORTHO05D006743 8.6e-166 587.8 549 55.4
Sp7g34600 Schrenkiella parvula HOM05D005552 ORTHO05D006743 4.3e-165 585.5 547 56.7
ClCG01G016650 Citrullus lanatus HOM05D005552 ORTHO05D006743 5.6e-165 585.1 551 54.1
Os03g0240900 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 5.6e-165 585.1 552 54.0
AT4G37190 Arabidopsis thaliana HOM05D005552 ORTHO05D006743 1.2e-164 583.9 546 56.0
CARHR245320 Cardamine hirsuta HOM05D005552 ORTHO05D006743 1.6e-164 583.6 547 56.5
Carub.0007s0338 Capsella rubella HOM05D005552 ORTHO05D006743 8.1e-164 581.3 547 55.9
AL7G13990 Arabidopsis lyrata HOM05D005552 ORTHO05D006743 1.1e-163 580.9 547 55.9
Lsat_1_v5_gn_4_168700 Lactuca sativa HOM05D005552 ORTHO05D006743 1.8e-163 580.1 549 53.4
Aa31LG6G13810 Aethionema arabicum HOM05D005552 ORTHO05D006743 4.0e-163 578.9 545 55.2
SGA_v2.0_scaffold36G14364 Striga asiatica HOM05D005552 ORTHO05D006743 6.4e-161 571.6 582 52.9
HPP92_017765 Vanilla planifolia HOM05D005552 ORTHO05D006743 8.3e-161 571.2 550 51.3
CsaV3_6G043060 Cucumis sativus L. HOM05D005552 ORTHO05D006743 4.6e-159 565.5 528 56.1
Thhalv10024834m.g Eutrema salsugineum HOM05D005552 ORTHO05D006743 3.0e-158 562.8 547 55.0
arahy.Tifrunner.gnm1.ann1.A2BBUY Arachis hypogaea HOM05D005552 ORTHO05D006743 3.9e-158 562.4 551 54.3
Phvul.002G021300 Phaseolus vulgaris HOM05D005552 ORTHO05D006743 1.1e-157 560.8 517 55.1
Hma1.2p1_0873F.1_g231280 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 3.3e-157 559.3 512 56.1
Zm00001eb030410 Zea mays HOM05D005552 ORTHO05D006743 5.2e-155 552.0 546 51.1
BcaNung03946 Brassica carinata HOM05D005552 ORTHO05D006743 2.4e-152 543.1 542 53.7
Manes.16G089500 Manihot esculenta HOM05D005552 ORTHO05D006743 4.6e-151 538.9 495 56.0
SEGI_18564 Sequoiadendron giganteum HOM05D005552 ORTHO05D006743 2.3e-150 536.6 556 50.5
Peaxi162Scf00073g00015 Petunia axillaris HOM05D005552 ORTHO05D006743 3.9e-150 535.8 503 56.3
A03p64710 Brassica napus HOM05D005552 ORTHO05D006743 1.9e-149 533.5 547 53.2
BraA03t15535Z Brassica rapa HOM05D005552 ORTHO05D006743 1.9e-149 533.5 547 53.2
Nitab4.5_0000368g0430 Nicotiana tabacum HOM05D005552 ORTHO05D006743 5.6e-149 531.9 580 50.3
Sopen01g043710 Solanum pennellii HOM05D005552 ORTHO05D006743 1.6e-148 530.4 475 56.8
DCAR_010923 Daucus carota HOM05D005552 ORTHO05D006743 8.1e-148 528.1 679 43.7
BcaNung04273 Brassica carinata HOM05D005552 ORTHO05D006743 8.9e-147 524.6 547 52.5
C07p62120 Brassica napus HOM05D005552 ORTHO05D006743 5.8e-146 521.9 546 51.8
BolC7t46629H Brassica oleracea HOM05D005552 ORTHO05D006743 5.8e-146 521.9 546 51.8
TAR628G0695 Trochodendron aralioides HOM05D005552 ORTHO05D006743 3.2e-136 489.6 406 60.8
Hma1.2p1_0873F.1_g231290 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 3.9e-134 482.6 438 55.5
Nn6g32078 Nelumbo nucifera HOM05D005552 ORTHO05D006743 1.5e-130 470.7 399 60.4
Oeu035482.1 Olea europaea HOM05D005552 ORTHO05D006743 2.5e-125 453.4 391 59.1
Os12g0586400 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 2.1e-124 450.3 556 45.1
FvH4_5g33502 Fragaria vesca HOM05D005552 ORTHO05D006743 1.4e-123 447.6 498 50.6
Gohir.A11G189700 Gossypium hirsutum HOM05D005552 ORTHO05D006743 1.3e-121 441.0 362 59.1
TAR376G0305 Trochodendron aralioides HOM05D005552 ORTHO05D006743 3.8e-113 412.9 423 54.1
FAN18G3771 Fragaria x ananassa HOM05D005552 ORTHO05D006743 3.8e-105 386.3 365 55.6
Mapoly0024s0139 Marchantia polymorpha HOM05D005552 ORTHO05D006743 3.0e-102 376.7 579 37.8
Pp3c2_14950 Physcomitrium patens HOM05D005552 ORTHO05D006743 3.7e-100 369.8 573 38.0
SMO358G0218 Selaginella moellendorffii HOM05D005552 ORTHO05D006743 5.3e-99 365.9 554 40.8
Atru.chr3.424 Acer truncatum HOM05D005552 ORTHO05D006743 7.0e-91 339.0 333 52.3
HanXRQChr04g0119851 Helianthus annuus HOM05D005552 ORTHO05D006743 3.1e-83 313.5 267 59.6
FAN08G3227 Fragaria x ananassa HOM05D005552 ORTHO05D006743 4.5e-82 309.7 380 47.6
unitig_26.g9473 Utricularia gibba HOM05D005552 ORTHO05D006743 2.8e-68 263.8 244 54.5
unitig_26.g9472 Utricularia gibba HOM05D005552 ORTHO05D006743 3.4e-53 213.8 291 44.3
HanXRQChr04g0119841 Helianthus annuus HOM05D005552 ORTHO05D006743 6.4e-52 209.5 211 49.3
CBR_g38209 Chara braunii HOM05D005552 ORTHO05D006743 5.4e-51 206.5 529 29.7
Atru.chr2.470 Acer truncatum HOM05D005552 ORTHO05D006743 3.4e-45 187.2 184 51.6
Atru.chr3.423 Acer truncatum HOM05D005552 ORTHO05D006743 1.3e-41 175.3 160 55.0
SHI23011 Sapria himalayana HOM05D005552 ORTHO05D006743 3.2e-27 127.5 151 43.0
arahy.Tifrunner.gnm1.ann1.S73BBB Arachis hypogaea HOM05D005552 ORTHO05D006743 2.1e-26 124.8 214 40.2
Psat4g201960 Pisum sativum HOM05D005552 ORTHO05D006743 6.0e-26 123.2 135 48.9
SHI23015 Sapria himalayana HOM05D005552 ORTHO05D006743 2.5e-24 117.9 127 47.2
MCO05G662 Micromonas commoda HOM05D005552 ORTHO05D006743 4.0e-22 110.5 407 25.1
C01p02170 Brassica napus HOM05D005552 ORTHO05D006743 2.9e-20 104.4 130 45.4
BolC1t00209H Brassica oleracea HOM05D005552 ORTHO05D006743 2.9e-20 104.4 130 45.4
Psat1g136760 Pisum sativum HOM05D005552 ORTHO05D006743 2.9e-20 104.4 118 44.9
arahy.Tifrunner.gnm1.ann1.ENA0P5 Arachis hypogaea HOM05D005552 ORTHO05D006743 8.4e-20 102.8 76 67.1
TAR376G0458 Trochodendron aralioides HOM05D005552 ORTHO05D006743 4.6e-18 97.1 72 62.5
Cre01.g043700 Chlamydomonas reinhardtii HOM05D005552 ORTHO05D006743 3.9e-17 94.0 570 21.9
Cfa026632 Carpinus fangiana HOM05D005552 ORTHO05D006743 1.1e-16 92.4 465 23.0
Psat5g241560 Pisum sativum HOM05D005552 ORTHO05D006743 1.3e-15 89.0 87 51.7
CSS0040680 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 3.6e-15 87.4 77 58.4
Ah.11g041060 Amaranthus hybridus HOM05D005552 ORTHO05D006743 1.1e-14 85.9 51 72.5
CSS0023439 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 2.6e-13 81.3 77 57.1
Peaxi162Scf00073g00115 Petunia axillaris HOM05D005552 ORTHO05D006743 2.9e-12 77.8 50 68.0
SEGI_06310 Sequoiadendron giganteum HOM05D005552 ORTHO05D006743 1.0e-09 69.3 50 62.0
FvH4_5g33501 Fragaria vesca HOM05D005552 ORTHO05D006743 3.9e-09 67.4 45 64.4
Cpa.g.sc6.394 Carica papaya HOM05D005552 ORTHO05D006743 2.5e-08 64.7 122 34.4
SHI23013 Sapria himalayana HOM05D001839 ORTHO05D001867 5.6e-08 63.5 70 52.9


User provided reference genes

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