Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G2006 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 2.5e-209 731.9 373 100.0
CDE01G0178 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 3.1e-127 459.1 248 94.4
CDE11G0990 Ceratophyllum demersum HOM05D002709 ORTHO05D002914 2.9e-48 196.8 110 90.9
CDE02G2384 Ceratophyllum demersum HOM05D002709 ORTHO05D002914 7.4e-44 182.2 110 82.7
MBI18_g42175_MAGBIO Magnolia biondii HOM05D004296 ORTHO05D005045 1.2e-41 174.9 299 40.5
TAR268G0002 Trochodendron aralioides HOM05D004296 ORTHO05D005045 1.9e-39 167.5 306 38.2
Sc01g0009550 Simmondsia chinensis HOM05D004296 ORTHO05D005045 7.2e-39 165.6 273 39.6
Atru.chr9.2192 Acer truncatum HOM05D004296 ORTHO05D005045 1.5e-36 157.9 290 38.3
TAR375G1065 Trochodendron aralioides HOM05D004296 ORTHO05D005045 9.7e-36 155.2 307 37.1
Dinv38945 Davidia involucrata HOM05D004296 ORTHO05D005045 1.3e-35 154.8 285 37.9
Hma1.2p1_0896F.1_g234000 Hydrangea macrophylla HOM05D004296 ORTHO05D005045 1.7e-35 154.5 290 38.3
Thecc.03G278500 Theobroma cacao HOM05D004296 ORTHO05D005045 2.8e-35 153.7 283 37.8
Duzib068G1191 Durio zibethinus HOM05D004296 ORTHO05D005045 4.8e-35 152.9 287 36.9
Eucgr.D01846 Eucalyptus grandis HOM05D004296 ORTHO05D005045 8.2e-35 152.1 289 37.0
Cpa.g.sc45.44 Carica papaya HOM05D004296 ORTHO05D005045 1.4e-34 151.4 290 37.9
Nn1g01503 Nelumbo nucifera HOM05D004296 ORTHO05D005045 1.8e-34 151.0 310 36.1
CSS0003782 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 3.1e-34 150.2 290 36.9
HPP92_021782 Vanilla planifolia HOM05D004296 ORTHO05D005045 3.1e-34 150.2 252 39.3
CSS0030285 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 5.3e-34 149.4 290 37.9
Lsat_1_v5_gn_5_92680 Lactuca sativa HOM05D004296 ORTHO05D005045 2.6e-33 147.1 250 38.4
TWI36G1592 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 2.2e-32 144.1 274 36.5
Actinidia02008 Actinidia chinensis HOM05D004296 ORTHO05D005045 2.9e-32 143.7 275 36.4
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 2.9e-32 143.7 274 37.6
DCAR_000614 Daucus carota HOM05D004296 ORTHO05D005045 2.9e-32 143.7 273 36.6
Lsat_1_v5_gn_6_87401 Lactuca sativa HOM05D004296 ORTHO05D005045 3.8e-32 143.3 253 38.3
Haze_22818 Corylus avellana HOM05D004296 ORTHO05D005045 8.5e-32 142.1 286 36.0
Glyma.20G061500 Glycine max HOM05D004296 ORTHO05D005045 8.5e-32 142.1 269 36.4
Hund05589 Selenicereus undatus HOM05D004296 ORTHO05D005045 8.5e-32 142.1 278 37.8
Oeu009155.1 Olea europaea HOM05D004296 ORTHO05D005045 1.9e-31 141.0 313 34.2
RcHm_v2.0_Chr7g0197731 Rosa chinensis HOM05D004296 ORTHO05D005045 2.5e-31 140.6 301 34.9
Manes.01G061800 Manihot esculenta HOM05D004296 ORTHO05D005045 3.2e-31 140.2 291 36.8
Glyma.01G220000 Glycine max HOM05D004296 ORTHO05D005045 4.2e-31 139.8 288 33.0
Cpa.g.sc39.99 Carica papaya HOM05D004296 ORTHO05D005045 5.5e-31 139.4 165 47.3
FAN07G0166 Fragaria x ananassa HOM05D004296 ORTHO05D005045 5.5e-31 139.4 304 35.2
Cfa013198 Carpinus fangiana HOM05D004296 ORTHO05D005045 9.4e-31 138.7 286 35.3
Ciclev10002111m.g Citrus clementina HOM05D004296 ORTHO05D005045 9.4e-31 138.7 274 35.0
FAN12G3540 Fragaria x ananassa HOM05D004296 ORTHO05D005045 9.4e-31 138.7 303 34.7
Migut.A00767 Erythranthe guttata HOM05D004296 ORTHO05D005045 1.2e-30 138.3 277 33.9
SalBow1G8718 Salvia bowleyana HOM05D004296 ORTHO05D005045 1.2e-30 138.3 282 34.8
FAN04G1575 Fragaria x ananassa HOM05D004296 ORTHO05D005045 3.6e-30 136.7 264 35.2
TPR.G3981 Trifolium pratense HOM05D004296 ORTHO05D005045 3.6e-30 136.7 288 34.4
Medtr0768s0010 Medicago truncatula HOM05D004296 ORTHO05D005045 4.7e-30 136.3 287 33.8
QL12p012797 Quercus lobata HOM05D004296 ORTHO05D005045 6.1e-30 136.0 289 34.3
TWI18G1338 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 6.1e-30 136.0 292 37.3
VMungo1080G1277 Vigna mungo HOM05D004296 ORTHO05D005045 8.0e-30 135.6 271 35.4
MSTRG.11985 Avicennia marina HOM05D004296 ORTHO05D005045 1.8e-29 134.4 285 34.7
Gohir.A05G299133 Gossypium hirsutum HOM05D004296 ORTHO05D005045 2.3e-29 134.0 143 46.9
SGA_v2.0_scaffold96G28938 Striga asiatica HOM05D004296 ORTHO05D005045 2.3e-29 134.0 264 33.3
Aqoxy3G03757 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 3.0e-29 133.7 262 34.7
Medtr6g011320 Medicago truncatula HOM05D004296 ORTHO05D005045 3.0e-29 133.7 285 34.7
Gohir.D05G298900 Gossypium hirsutum HOM05D004296 ORTHO05D005045 6.7e-29 132.5 269 35.3
Lj2A555T5 Lonicera japonica HOM05D004296 ORTHO05D005045 6.7e-29 132.5 151 46.4
MD14G1104200 Malus domestica HOM05D004296 ORTHO05D005045 6.7e-29 132.5 157 43.3
Phvul.002G157700 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 8.8e-29 132.1 281 32.0
CSS0037206 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 1.1e-28 131.7 290 34.1
Cc10_g03910 Coffea canephora HOM05D004296 ORTHO05D005045 1.1e-28 131.7 226 41.2
Gorai.009G316100 Gossypium raimondii HOM05D004296 ORTHO05D005045 1.1e-28 131.7 268 34.7
Prupe.5G099900 Prunus persica HOM05D004296 ORTHO05D005045 1.1e-28 131.7 163 46.0
Potri.003G127200 Populus trichocarpa HOM05D004296 ORTHO05D005045 1.5e-28 131.3 175 44.0
PSO210G3801 Papaver somniferum HOM05D004296 ORTHO05D005045 2.0e-28 131.0 157 49.7
Lalb_Chr20g0109121 Lupinus albus HOM05D004296 ORTHO05D005045 2.6e-28 130.6 277 32.1
FvH4_5g02380 Fragaria vesca HOM05D004296 ORTHO05D005045 3.3e-28 130.2 271 35.1
FAN08G1593 Fragaria x ananassa HOM05D004296 ORTHO05D005045 3.3e-28 130.2 271 34.3
Lj8C228T3 Lonicera japonica HOM05D004296 ORTHO05D005045 3.3e-28 130.2 156 46.2
PGSC0003DMG400012342 Solanum tuberosum HOM05D004296 ORTHO05D005045 4.4e-28 129.8 155 42.6
Ah.12g054620 Amaranthus hybridus HOM05D004296 ORTHO05D005045 5.7e-28 129.4 321 32.7
Sopen04g002480 Solanum pennellii HOM05D004296 ORTHO05D005045 5.7e-28 129.4 155 43.2
Os01g0541600 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 7.4e-28 129.0 236 37.3
Peaxi162Scf00014g00082 Petunia axillaris HOM05D004296 ORTHO05D005045 7.4e-28 129.0 310 32.6
Phvul.005G126900 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 9.7e-28 128.6 284 34.9
Psat7g254600 Pisum sativum HOM05D004296 ORTHO05D005045 1.3e-27 128.3 159 43.4
PGSC0003DMG403005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 1.3e-27 128.3 155 43.9
Solyc04g007420.4 Solanum lycopersicum HOM05D004296 ORTHO05D005045 1.7e-27 127.9 155 42.6
PGR031G2604 Punica granatum HOM05D004296 ORTHO05D005045 2.2e-27 127.5 280 35.4
LjContig00312_ERROPOS870357g0005117 Lotus japonicus HOM05D004296 ORTHO05D005045 2.8e-27 127.1 288 33.0
Sed0022715 Sechium edule HOM05D004296 ORTHO05D005045 2.8e-27 127.1 149 47.7
Sopen08g029360 Solanum pennellii HOM05D004296 ORTHO05D005045 4.8e-27 126.3 155 43.2
MSTRG.11987 Avicennia marina HOM05D004296 ORTHO05D005045 6.3e-27 125.9 268 34.0
CAN.G774.35 Capsicum annuum HOM05D004296 ORTHO05D005045 6.3e-27 125.9 156 42.9
Psat1g061240 Pisum sativum HOM05D004296 ORTHO05D005045 6.3e-27 125.9 159 42.1
AUR62007249 Chenopodium quinoa HOM05D004296 ORTHO05D005045 8.2e-27 125.6 162 44.4
ClCG07G008080 Citrullus lanatus HOM05D004296 ORTHO05D005045 8.2e-27 125.6 293 36.2
EL10Ac8g19045 Beta vulgaris HOM05D004296 ORTHO05D005045 1.1e-26 125.2 292 33.2
FAN12G1413 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.4e-26 124.8 132 48.5
Rhsim02G0231000 Rhododendron simsii HOM05D004296 ORTHO05D005045 1.4e-26 124.8 293 33.4
FvH4_4g36830 Fragaria vesca HOM05D004296 ORTHO05D005045 1.8e-26 124.4 270 33.7
PGSC0003DMG401005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 1.8e-26 124.4 156 42.9
CiPaw.08G074700 Carya illinoinensis HOM05D004296 ORTHO05D005045 2.4e-26 124.0 313 34.2
Peaxi162Scf00119g00828 Petunia axillaris HOM05D004296 ORTHO05D005045 2.4e-26 124.0 333 30.0
Solyc08g081040.3 Solanum lycopersicum HOM05D004296 ORTHO05D005045 2.4e-26 124.0 155 42.6
CSS0027171 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 3.1e-26 123.6 165 44.2
MD07G1059600 Malus domestica HOM05D004296 ORTHO05D005045 3.1e-26 123.6 197 39.6
Oeu020615.1 Olea europaea HOM05D004296 ORTHO05D005045 4.1e-26 123.2 154 44.8
unitig_32.g11599 Utricularia gibba HOM05D004296 ORTHO05D005045 5.3e-26 122.9 280 33.9
HanXRQChr03g0086731 Helianthus annuus HOM05D004296 ORTHO05D005045 9.1e-26 122.1 156 42.9
FAN07G0122 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.2e-25 121.7 147 45.6
TPR.G4254 Trifolium pratense HOM05D004296 ORTHO05D005045 1.2e-25 121.7 267 33.0
ATR0680G148 Amborella trichopoda HOM05D004296 ORTHO05D005045 1.6e-25 121.3 186 36.6
Hund17074 Selenicereus undatus HOM05D004296 ORTHO05D005045 1.6e-25 121.3 282 33.7
MELO3C016352.2 Cucumis melo HOM05D004296 ORTHO05D005045 2.0e-25 120.9 153 48.4
SalBow7G4152 Salvia bowleyana HOM05D004296 ORTHO05D005045 2.0e-25 120.9 224 36.2
PSO782G5383 Papaver somniferum HOM05D004296 ORTHO05D005045 2.6e-25 120.6 333 31.5
Sp7g00660 Schrenkiella parvula HOM05D004296 ORTHO05D005045 2.6e-25 120.6 239 35.1
SpUn0010_0140 Schrenkiella parvula HOM05D004296 ORTHO05D005045 2.6e-25 120.6 239 35.1
CSS0028138 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 3.5e-25 120.2 165 43.0
FAN17G1800 Fragaria x ananassa HOM05D004296 ORTHO05D005045 4.5e-25 119.8 285 33.0
arahy.Tifrunner.gnm1.ann1.KQ253K Arachis hypogaea HOM05D004296 ORTHO05D005045 5.9e-25 119.4 275 30.5
SHI24854 Sapria himalayana HOM05D004296 ORTHO05D005045 5.9e-25 119.4 196 37.2
HanXRQChr03g0086721 Helianthus annuus HOM05D004296 ORTHO05D005045 7.7e-25 119.0 156 41.0
arahy.Tifrunner.gnm1.ann1.SKNY54 Arachis hypogaea HOM05D004296 ORTHO05D005045 1.3e-24 118.2 277 30.7
Nitab4.5_0001615g0200 Nicotiana tabacum HOM05D004296 ORTHO05D005045 1.7e-24 117.9 331 30.2
CARHR213060 Cardamine hirsuta HOM05D004296 ORTHO05D005045 2.9e-24 117.1 237 34.6
Lj8A231T11 Lonicera japonica HOM05D004296 ORTHO05D005045 2.9e-24 117.1 182 39.6
CsaV3_4G005960 Cucumis sativus L. HOM05D004296 ORTHO05D005045 3.8e-24 116.7 153 45.8
Aqoxy3G00118 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 5.0e-24 116.3 262 34.0
Aa31LG9G640 Aethionema arabicum HOM05D004296 ORTHO05D005045 6.5e-24 115.9 238 34.9
Carub.0007s3425 Capsella rubella HOM05D004296 ORTHO05D005045 6.5e-24 115.9 242 34.3
arahy.Tifrunner.gnm1.ann1.CEX2YD Arachis hypogaea HOM05D004296 ORTHO05D005045 8.5e-24 115.5 155 39.4
Zm00001eb162950 Zea mays HOM05D004296 ORTHO05D005045 2.5e-23 114.0 333 29.7
C04p48320 Brassica napus HOM05D004296 ORTHO05D005045 3.2e-23 113.6 285 29.8
ECA240G3612 Erigeron canadensis HOM05D004296 ORTHO05D005045 3.2e-23 113.6 152 39.5
Nitab4.5_0011683g0020 Nicotiana tabacum HOM05D004296 ORTHO05D005045 3.2e-23 113.6 331 27.8
BcaB06g27609 Brassica carinata HOM05D004296 ORTHO05D005045 1.6e-22 111.3 164 38.4
BcaC02g08973 Brassica carinata HOM05D004296 ORTHO05D005045 2.1e-22 110.9 286 29.0
BolC4t26425H Brassica oleracea HOM05D004296 ORTHO05D005045 2.1e-22 110.9 286 29.0
THA.LOC104809392 Tarenaya hassleriana HOM05D004296 ORTHO05D005045 1.0e-21 108.6 279 31.9
Actinidia14560 Actinidia chinensis HOM05D004296 ORTHO05D005045 1.4e-21 108.2 268 32.1
AL7G48180 Arabidopsis lyrata HOM05D004296 ORTHO05D005045 1.8e-21 107.8 215 35.3
A04p14410 Brassica napus HOM05D004296 ORTHO05D005045 1.8e-21 107.8 163 38.0
BraA04t17088Z Brassica rapa HOM05D004296 ORTHO05D005045 1.8e-21 107.8 163 38.0
AT5G41270 Arabidopsis thaliana HOM05D004296 ORTHO05D005045 4.0e-21 106.7 242 31.8
QL05p087372 Quercus lobata HOM05D004296 ORTHO05D005045 5.2e-21 106.3 296 31.1
Lalb_Chr09g0320981 Lupinus albus HOM05D004296 ORTHO05D005045 8.8e-21 105.5 198 31.8
PSO478G0046 Papaver somniferum HOM05D004296 ORTHO05D005045 8.8e-21 105.5 313 33.2
Thhalv10028247m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 3.3e-20 103.6 242 31.0
Carub.0001s0729 Capsella rubella HOM05D004296 ORTHO05D005045 5.7e-20 102.8 230 33.5
AUR62018749 Chenopodium quinoa HOM05D004296 ORTHO05D005045 5.7e-20 102.8 161 40.4
SEGI_21744 Sequoiadendron giganteum HOM05D004296 ORTHO05D005045 9.7e-20 102.1 250 31.6
Sed0002821 Sechium edule HOM05D004296 ORTHO05D005045 2.2e-19 100.9 235 35.3
Rhsim02G0230400 Rhododendron simsii HOM05D004296 ORTHO05D005045 1.8e-18 97.8 248 33.1
FAN18G3255 Fragaria x ananassa HOM05D004296 ORTHO05D005045 3.1e-18 97.1 80 60.0
FAN13G2230 Fragaria x ananassa HOM05D004296 ORTHO05D005045 7.7e-17 92.4 108 48.1
CAN.G1069.19 Capsicum annuum HOM05D004296 ORTHO05D005045 1.3e-16 91.7 100 44.0
arahy.Tifrunner.gnm1.ann1.W3QJXS Arachis hypogaea HOM05D004296 ORTHO05D005045 8.5e-16 89.0 217 30.4
Psat0s5346g0040 Pisum sativum HOM05D002378 ORTHO05D002936 8.5e-16 89.0 210 32.9
Thhalv10027895m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 2.5e-15 87.4 242 29.3
Os01g0531000 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 3.2e-15 87.0 81 49.4
Sabra01G0078900 Salix brachista HOM05D004296 ORTHO05D005045 2.1e-14 84.3 77 54.5
Mapoly0057s0058 Marchantia polymorpha HOM05D004296 ORTHO05D005045 1.2e-12 78.6 260 30.0
Haze_21601 Corylus avellana HOM05D004296 ORTHO05D005045 5.7e-12 76.3 213 30.5
Rhsim02G0230900 Rhododendron simsii HOM05D004296 ORTHO05D005045 1.4e-10 71.6 74 43.2
PSO210G3847 Papaver somniferum HOM05D004296 ORTHO05D005045 9.1e-10 68.9 241 30.3
Nitab4.5_0003441g0080 Nicotiana tabacum HOM05D004296 ORTHO05D005045 1.6e-09 68.2 67 46.3
Oeu009158.1 Olea europaea HOM05D004296 ORTHO05D005045 1.3e-08 65.1 175 30.9
Pp3c22_14200 Physcomitrium patens HOM05D004296 ORTHO05D005045 1.7e-08 64.7 116 37.1
ATR0680G137 Amborella trichopoda HOM05D004296 ORTHO05D005045 1.9e-07 61.2 74 37.8
Mapoly0057s0052 Marchantia polymorpha HOM05D004296 ORTHO05D005045 2.5e-07 60.8 113 37.2
PGSC0003DMG402005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 1.6e-06 58.2 94 38.3


User provided reference genes

Program Settings