Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G1987 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 7.1e-156 553.9 284 100.0
TAR636G3199 Trochodendron aralioides HOM05D005617 ORTHO05D006847 1.4e-90 337.0 290 64.8
MBI10_g30078_MAGBIO Magnolia biondii HOM05D005617 ORTHO05D006847 2.0e-89 333.2 288 64.9
Dinv07760 Davidia involucrata HOM05D005617 ORTHO05D006847 3.4e-89 332.4 288 63.9
Hma1.2p1_0075F.1_g039170 Hydrangea macrophylla HOM05D005617 ORTHO05D006847 1.4e-87 327.0 288 62.5
CSS0012605 Camellia sinensis var. sinensis HOM05D005617 ORTHO05D006847 3.2e-87 325.9 287 61.3
Aqoxy2G03651 Aquilegia oxysepala HOM05D005617 ORTHO05D006847 2.7e-86 322.8 287 61.3
CiPaw.08G118100 Carya illinoinensis HOM05D005617 ORTHO05D006847 2.7e-86 322.8 288 62.5
GSVIVG01023530001 Vitis vinifera HOM05D005617 ORTHO05D006847 3.5e-86 322.4 287 62.4
Gohir.A11G299400 Gossypium hirsutum HOM05D005617 ORTHO05D006847 1.6e-83 313.5 289 60.2
Duzib177G1169 Durio zibethinus HOM05D005617 ORTHO05D006847 2.8e-83 312.8 289 60.9
Thecc.05G271700 Theobroma cacao HOM05D005617 ORTHO05D006847 2.8e-83 312.8 289 59.9
TWI56G1032 Tripterygium wilfordii HOM05D005617 ORTHO05D006847 2.8e-83 312.8 290 60.0
Gorai.007G345400 Gossypium raimondii HOM05D005617 ORTHO05D006847 6.2e-83 311.6 289 59.9
Prupe.6G349300 Prunus persica HOM05D005617 ORTHO05D006847 8.1e-83 311.2 292 59.9
Gohir.D11G314200 Gossypium hirsutum HOM05D005617 ORTHO05D006847 1.4e-82 310.5 289 59.9
PGR142G1895 Punica granatum HOM05D005617 ORTHO05D006847 1.8e-82 310.1 291 61.2
MD17G1278900 Malus domestica HOM05D005617 ORTHO05D006847 5.2e-82 308.5 291 60.5
Phvul.006G105300 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 5.2e-82 308.5 288 59.7
VMungo0540G0455 Vigna mungo HOM05D005617 ORTHO05D006847 5.2e-82 308.5 288 59.4
Ciclev10021517m.g Citrus clementina HOM05D005617 ORTHO05D006847 8.9e-82 307.8 288 58.3
Manes.08G138800 Manihot esculenta HOM05D005617 ORTHO05D006847 1.2e-81 307.4 288 58.0
Glyma.19G248200 Glycine max HOM05D005617 ORTHO05D006847 1.5e-81 307.0 288 59.7
MD09G1286500 Malus domestica HOM05D005617 ORTHO05D006847 1.5e-81 307.0 291 60.1
COL.COLO4_15469 Corchorus olitorius HOM05D005617 ORTHO05D006847 2.0e-81 306.6 256 64.8
Actinidia34747 Actinidia chinensis HOM05D005617 ORTHO05D006847 3.4e-81 305.8 287 57.8
CsaV3_1G036020 Cucumis sativus L. HOM05D005617 ORTHO05D006847 3.4e-81 305.8 291 59.5
Sed0027621 Sechium edule HOM05D005617 ORTHO05D006847 4.4e-81 305.4 291 59.5
Sc06g0003230 Simmondsia chinensis HOM05D005617 ORTHO05D006847 4.4e-81 305.4 289 59.9
CANSAT54G2044 Cannabis sativa HOM05D005617 ORTHO05D006847 9.8e-81 304.3 290 60.7
Glyma.03G250700 Glycine max HOM05D005617 ORTHO05D006847 1.3e-80 303.9 288 58.3
Eucgr.L02949 Eucalyptus grandis HOM05D005617 ORTHO05D006847 2.2e-80 303.1 244 68.0
Potri.013G046200 Populus trichocarpa HOM05D005617 ORTHO05D006847 2.4e-79 299.7 287 55.7
Eucgr.B02145 Eucalyptus grandis HOM05D005617 ORTHO05D006847 3.2e-79 299.3 244 67.2
HPP92_002964 Vanilla planifolia HOM05D005617 ORTHO05D006847 4.1e-79 298.9 293 56.7
RcHm_v2.0_Chr3g0449811 Rosa chinensis HOM05D005617 ORTHO05D006847 1.2e-78 297.4 288 59.4
QL03p030835 Quercus lobata HOM05D005617 ORTHO05D006847 4.6e-78 295.4 288 57.6
HanXRQChr14g0455191 Helianthus annuus HOM05D005617 ORTHO05D006847 7.8e-78 294.7 292 57.5
Lj2A41G63 Lonicera japonica HOM05D005617 ORTHO05D006847 3.9e-77 292.4 256 61.3
AUR62004851 Chenopodium quinoa HOM05D005617 ORTHO05D006847 2.5e-76 289.7 296 58.1
arahy.Tifrunner.gnm1.ann1.X65E39 Arachis hypogaea HOM05D005617 ORTHO05D006847 7.3e-76 288.1 261 61.3
arahy.Tifrunner.gnm1.ann1.9NRB0Q Arachis hypogaea HOM05D005617 ORTHO05D006847 9.5e-76 287.7 291 57.4
PSO017G5929 Papaver somniferum HOM05D005617 ORTHO05D006847 1.2e-75 287.3 240 64.6
Cc02_g08910 Coffea canephora HOM05D005617 ORTHO05D006847 2.1e-75 286.6 294 59.5
Lj1g0025948 Lotus japonicus HOM05D005617 ORTHO05D006847 2.8e-75 286.2 292 57.2
FAN14G0582 Fragaria x ananassa HOM05D005617 ORTHO05D006847 3.6e-75 285.8 289 57.8
EL10Ac4g09040 Beta vulgaris HOM05D005617 ORTHO05D006847 1.1e-74 284.3 241 64.7
THA.LOC104805778 Tarenaya hassleriana HOM05D005617 ORTHO05D006847 1.1e-74 284.3 289 57.1
ECA238G4125 Erigeron canadensis HOM05D005617 ORTHO05D006847 1.8e-74 283.5 244 61.9
SalBow3G1639 Salvia bowleyana HOM05D005617 ORTHO05D006847 2.3e-74 283.1 282 56.4
CARHR008550 Cardamine hirsuta HOM05D005617 ORTHO05D006847 4.0e-74 282.3 289 56.4
CAN.G1609.4 Capsicum annuum HOM05D005617 ORTHO05D006847 5.2e-74 282.0 252 61.1
PGSC0003DMG400011501 Solanum tuberosum HOM05D005617 ORTHO05D006847 5.2e-74 282.0 239 62.8
Potri.019G018300 Populus trichocarpa HOM05D005617 ORTHO05D006847 6.8e-74 281.6 270 56.7
TPR.G6961 Trifolium pratense HOM05D005617 ORTHO05D006847 6.8e-74 281.6 292 55.5
DCAR_023096 Daucus carota HOM05D005617 ORTHO05D006847 8.9e-74 281.2 262 59.9
Sopen04g005070 Solanum pennellii HOM05D005617 ORTHO05D006847 8.9e-74 281.2 252 59.9
Solyc04g009940.4 Solanum lycopersicum HOM05D005617 ORTHO05D006847 2.0e-73 280.0 252 59.9
Psat3g006600 Pisum sativum HOM05D005617 ORTHO05D006847 4.4e-73 278.9 295 55.3
Oeu012233.2 Olea europaea HOM05D005617 ORTHO05D006847 7.6e-73 278.1 295 54.9
Peaxi162Scf00135g00418 Petunia axillaris HOM05D005617 ORTHO05D006847 7.6e-73 278.1 285 55.4
FAN05G0714 Fragaria x ananassa HOM05D001473 ORTHO05D003934 9.9e-73 277.7 288 56.9
Carub.0001s0800 Capsella rubella HOM05D005617 ORTHO05D006847 1.3e-72 277.3 288 55.6
AL1G19070 Arabidopsis lyrata HOM05D005617 ORTHO05D006847 1.7e-72 276.9 288 56.6
Nitab4.5_0003768g0040 Nicotiana tabacum HOM05D005617 ORTHO05D006847 2.9e-72 276.2 240 62.5
PSO063G2686 Papaver somniferum HOM05D005617 ORTHO05D006847 3.7e-72 275.8 262 59.5
ATR0736G212 Amborella trichopoda HOM05D005617 ORTHO05D006847 8.4e-72 274.6 267 58.8
FAN05G5604 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.1e-71 274.2 288 56.6
MSTRG.27377 Avicennia marina HOM05D005617 ORTHO05D006847 1.4e-71 273.9 283 54.1
Lalb_Chr04g0262061 Lupinus albus HOM05D005617 ORTHO05D006847 1.9e-71 273.5 293 55.6
Sp1g07300 Schrenkiella parvula HOM05D005617 ORTHO05D006847 1.9e-71 273.5 288 54.2
Medtr7g115670 Medicago truncatula HOM05D005617 ORTHO05D006847 5.4e-71 271.9 274 57.7
Ah.06g191860 Amaranthus hybridus HOM05D005617 ORTHO05D006847 7.1e-71 271.6 289 56.1
Thhalv10008167m.g Eutrema salsugineum HOM05D005617 ORTHO05D006847 7.1e-71 271.6 289 55.4
MELO3C020566.2 Cucumis melo HOM05D005617 ORTHO05D006847 1.2e-70 270.8 296 53.7
C05p06720 Brassica napus HOM05D005617 ORTHO05D006847 3.5e-70 269.2 290 54.8
BraA06t23768Z Brassica rapa HOM05D005617 ORTHO05D006847 3.5e-70 269.2 290 54.5
Migut.F00803 Erythranthe guttata HOM05D005617 ORTHO05D006847 3.5e-70 269.2 243 59.7
Rhsim09G0137600 Rhododendron simsii HOM05D005617 ORTHO05D006847 4.6e-70 268.9 288 53.5
AT1G08640 Arabidopsis thaliana HOM05D005617 ORTHO05D006847 6.0e-70 268.5 288 55.6
BcaC05g24795 Brassica carinata HOM05D005617 ORTHO05D006847 1.0e-69 267.7 290 53.8
BolC5t29432H Brassica oleracea HOM05D005617 ORTHO05D006847 1.0e-69 267.7 290 53.8
BcaB07g34105 Brassica carinata HOM05D005617 ORTHO05D006847 1.3e-69 267.3 292 54.1
Nitab4.5_0003780g0030 Nicotiana tabacum HOM05D005617 ORTHO05D006847 6.6e-69 265.0 224 64.7
BcaB03g13320 Brassica carinata HOM05D005617 ORTHO05D006847 2.5e-68 263.1 290 54.5
Lsat_1_v5_gn_2_108021 Lactuca sativa HOM05D005617 ORTHO05D006847 7.3e-68 261.5 218 64.2
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 1.2e-67 260.8 256 59.0
SEGI_39921 Sequoiadendron giganteum HOM05D005617 ORTHO05D006847 1.2e-67 260.8 251 53.4
FAN14G1026 Fragaria x ananassa HOM05D001473 ORTHO05D003934 6.2e-67 258.5 268 57.5
Aa31sc110G20 Aethionema arabicum HOM05D005617 ORTHO05D006847 7.6e-65 251.5 267 52.4
A06p05600 Brassica napus HOM05D005617 ORTHO05D006847 3.2e-63 246.1 275 53.5
unitig_32.g10679 Utricularia gibba HOM05D005617 ORTHO05D006847 2.1e-62 243.4 245 56.3
Sabra13G0042400 Salix brachista HOM05D005617 ORTHO05D006847 1.3e-59 234.2 313 46.3
Hund22155 Selenicereus undatus HOM05D005617 ORTHO05D006847 2.4e-58 229.9 241 56.8
Haze_04439 Corylus avellana HOM05D005617 ORTHO05D006847 1.2e-57 227.6 285 50.5
FvH4_6g01960 Fragaria vesca HOM05D005617 ORTHO05D006847 4.4e-57 225.7 246 56.5
Nn1g08261 Nelumbo nucifera HOM05D005617 ORTHO05D006847 4.9e-56 222.2 215 57.7
FAN09G1753 Fragaria x ananassa HOM05D001473 ORTHO05D003934 8.4e-56 221.5 247 55.1
SMO116G0251 Selaginella moellendorffii HOM05D005617 ORTHO05D006847 1.1e-55 221.1 225 52.0
Mapoly0036s0041 Marchantia polymorpha HOM05D005617 ORTHO05D006847 2.7e-54 216.5 254 48.0
Zm00001eb261540 Zea mays HOM05D005617 ORTHO05D006847 3.5e-54 216.1 231 49.8
Os08g0127600 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 4.6e-54 215.7 223 51.6
AUR62040935 Chenopodium quinoa HOM05D005617 ORTHO05D006847 6.6e-53 211.8 183 66.1
AagrBONN_evm.TU.Sc2ySwM_344.3205 Anthoceros agrestis HOM05D005617 ORTHO05D006847 2.5e-52 209.9 249 45.0
Ca_09461_v3 Cicer arietinum L. HOM05D005617 ORTHO05D006847 4.3e-52 209.1 164 64.0
Os10g0478100 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 4.3e-52 209.1 224 51.8
ClCG03G000920 Citrullus lanatus HOM05D005617 ORTHO05D006847 8.1e-51 204.9 246 50.4
Cpa.g.sc162.39 Carica papaya HOM05D005617 ORTHO05D006847 2.9e-48 196.4 168 60.7
Atru.chr2.967 Acer truncatum HOM05D005617 ORTHO05D006847 1.4e-47 194.1 176 63.1
Pp3c23_15250 Physcomitrium patens HOM05D005617 ORTHO05D006847 3.5e-46 189.5 240 46.7
SGA_v2.0_scaffold380G50362 Striga asiatica HOM05D005617 ORTHO05D006847 5.6e-44 182.2 286 42.3
TAR365G0454 Trochodendron aralioides HOM05D005617 ORTHO05D006847 1.3e-43 181.0 225 48.9
Zm00001eb173360 Zea mays HOM05D005617 ORTHO05D006847 2.5e-39 166.8 186 47.3
C08p12050 Brassica napus HOM05D005617 ORTHO05D006847 3.2e-39 166.4 237 48.1
vmacro10358 Vaccinium macrocarpon HOM05D005617 ORTHO05D006847 6.0e-38 162.2 236 42.8
FAN02G1215 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.4e-34 151.0 143 60.1
CDE04G2248 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 1.9e-31 140.6 112 75.0
TPR.G11236 Trifolium pratense HOM05D005617 ORTHO05D006847 4.2e-31 139.4 109 60.6
CBR_g63068 Chara braunii HOM05D005617 ORTHO05D006847 1.8e-29 134.0 223 39.0
SHI23140 Sapria himalayana HOM05D005617 ORTHO05D001257 2.5e-28 130.2 187 39.0
BcaC07g38407 Brassica carinata HOM05D005617 ORTHO05D006847 1.7e-16 90.9 133 44.4
BcaC07g38438 Brassica carinata HOM05D005617 ORTHO05D006847 2.5e-15 87.0 80 57.5
C08p11620 Brassica napus HOM05D005617 ORTHO05D006847 4.2e-15 86.3 70 61.4
TPR.G6979 Trifolium pratense HOM05D005617 ORTHO05D006847 4.2e-15 86.3 109 46.8
C08p11650 Brassica napus HOM05D005617 ORTHO05D006847 7.2e-15 85.5 70 61.4
C08p11690 Brassica napus HOM05D005617 ORTHO05D006847 9.4e-15 85.1 70 60.0
Sabra19G0030400 Salix brachista HOM05D001473 ORTHO05D003934 6.7e-13 79.0 130 46.9
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 1.3e-11 74.7 108 32.4
Rhsim04G0044500 Rhododendron simsii HOM05D005617 ORTHO05D000521 1.3e-11 74.7 67 53.7
TPR.G21937 Trifolium pratense HOM05D005617 ORTHO05D006847 2.2e-11 73.9 60 61.7
BolC8t48841H Brassica oleracea HOM05D005617 ORTHO05D006847 4.8e-11 72.8 71 57.7
FvH4_6g01860 Fragaria vesca HOM05D005617 ORTHO05D006847 1.1e-10 71.6 104 45.2
FAN14G4186 Fragaria x ananassa HOM05D005617 ORTHO05D006847 1.4e-10 71.2 104 44.2
FAN14G5978 Fragaria x ananassa HOM05D005617 ORTHO05D006847 1.4e-10 71.2 104 44.2
Atru.chr2.966 Acer truncatum HOM05D005617 ORTHO05D006847 1.8e-10 70.9 54 61.1
FAN14G3066 Fragaria x ananassa HOM05D005617 ORTHO05D006847 2.4e-10 70.5 104 44.2
FAN09G3889 Fragaria x ananassa HOM05D005617 ORTHO05D006847 7.0e-10 68.9 104 43.3
Phvul.005G084700 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 7.0e-10 68.9 132 35.6
Cre03.g171100 Chlamydomonas reinhardtii HOM05D005617 ORTHO05D006847 2.5e-07 60.5 105 32.4
PRCOL_00005829 Prasinoderma coloniale HOM05D005617 ORTHO05D006847 2.5e-07 60.5 194 26.8


User provided reference genes

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