Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G1951 Ceratophyllum demersum HOM05D000046 ORTHO05D129936 9.9e-49 196.4 97 100.0
CDE02G4130 Ceratophyllum demersum HOM05D000046 ORTHO05D000457 1.2e-22 109.8 66 78.8
Sabra06G0060200 Salix brachista HOM05D000046 ORTHO05D000457 1.9e-12 75.9 68 58.8
DCAR_009049 Daucus carota HOM05D000046 ORTHO05D000457 3.3e-12 75.1 76 48.7
MBI16_g00834_MAGBIO Magnolia biondii HOM05D000046 ORTHO05D000457 3.3e-12 75.1 66 57.6
PSO063G6271 Papaver somniferum HOM05D000046 ORTHO05D000457 4.3e-12 74.7 68 55.9
Actinidia02473 Actinidia chinensis HOM05D000046 ORTHO05D000457 5.7e-12 74.3 95 45.3
Aqoxy7G02655 Aquilegia oxysepala HOM05D000046 ORTHO05D000457 9.7e-12 73.6 66 56.1
Actinidia07564 Actinidia chinensis HOM05D000046 ORTHO05D000457 1.6e-11 72.8 98 45.9
Haze_19091 Corylus avellana HOM05D000046 ORTHO05D000457 1.6e-11 72.8 91 42.9
Nn8g41148 Nelumbo nucifera HOM05D000046 ORTHO05D000457 2.2e-11 72.4 70 52.9
vmacro20756 Vaccinium macrocarpon HOM05D000046 ORTHO05D000457 2.2e-11 72.4 70 51.4
Lju50A24G46 Lonicera japonica HOM05D000046 ORTHO05D000457 3.7e-11 71.6 65 58.5
PSO170G5880 Papaver somniferum HOM05D000046 ORTHO05D000457 3.7e-11 71.6 68 54.4
Potri.018G149100 Populus trichocarpa HOM05D000046 ORTHO05D000457 3.7e-11 71.6 78 50.0
Sabra18G0125900 Salix brachista HOM05D000046 ORTHO05D011418 3.7e-11 71.6 78 50.0
Sabra18G0129600 Salix brachista HOM05D000046 ORTHO05D000457 3.7e-11 71.6 78 50.0
HPP92_004722 Vanilla planifolia HOM05D000046 ORTHO05D000457 3.7e-11 71.6 89 42.7
TWI63G1807 Tripterygium wilfordii HOM05D000046 ORTHO05D000457 4.8e-11 71.2 73 47.9
Oeu018302.1 Olea europaea HOM05D000046 ORTHO05D000457 6.3e-11 70.9 70 51.4
Dinv26484 Davidia involucrata HOM05D000046 ORTHO05D000457 8.2e-11 70.5 72 52.8
Lj9A7G34 Lonicera japonica HOM05D000046 ORTHO05D000457 8.2e-11 70.5 65 56.9
VMungo0251G1104 Vigna mungo HOM05D000046 ORTHO05D000457 8.2e-11 70.5 70 50.0
CiPaw.16G104600 Carya illinoinensis HOM05D000046 ORTHO05D000457 1.1e-10 70.1 71 49.3
Phvul.002G302300 Phaseolus vulgaris HOM05D000046 ORTHO05D000457 1.1e-10 70.1 70 52.9
Potri.006G079600 Populus trichocarpa HOM05D000046 ORTHO05D000457 1.1e-10 70.1 68 52.9
TAR383G0420 Trochodendron aralioides HOM05D000046 ORTHO05D000457 1.1e-10 70.1 87 43.7
Dinv12619 Davidia involucrata HOM05D000046 ORTHO05D000457 1.4e-10 69.7 70 52.9
Rhsim01G0108000 Rhododendron simsii HOM05D000046 ORTHO05D000457 1.4e-10 69.7 70 47.1
Glyma.05G220600 Glycine max HOM05D000046 ORTHO05D000457 1.8e-10 69.3 69 53.6
MD13G1231900 Malus domestica HOM05D000046 ORTHO05D000457 2.4e-10 68.9 78 51.3
QL11p008065 Quercus lobata HOM05D000046 ORTHO05D000457 2.4e-10 68.9 66 51.5
TWI34G1585 Tripterygium wilfordii HOM05D000046 ORTHO05D000457 2.4e-10 68.9 73 47.9
CANSAT80G1631 Cannabis sativa HOM05D000046 ORTHO05D000457 3.1e-10 68.6 80 43.8
Cpa.g.sc207.19 Carica papaya HOM05D000046 ORTHO05D000457 4.1e-10 68.2 71 52.1
SGA_v2.0_scaffold21G09603 Striga asiatica HOM05D000046 ORTHO05D000457 4.1e-10 68.2 67 53.7
Glyma.08G027100 Glycine max HOM05D000046 ORTHO05D000457 5.3e-10 67.8 69 55.1
Eucgr.C00060 Eucalyptus grandis HOM05D000046 ORTHO05D000457 6.9e-10 67.4 65 55.4
MSTRG.19402 Avicennia marina HOM05D000046 ORTHO05D000457 9.0e-10 67.0 70 54.3
CSS0006360 Camellia sinensis var. sinensis HOM05D000046 ORTHO05D000457 9.0e-10 67.0 82 42.7
AUR62020727 Chenopodium quinoa HOM05D000046 ORTHO05D000457 9.0e-10 67.0 66 50.0
Ca_17432_v3 Cicer arietinum L. HOM05D000046 ORTHO05D000457 9.0e-10 67.0 67 50.7
Ca_17441_v3 Cicer arietinum L. HOM05D000046 ORTHO05D000457 9.0e-10 67.0 67 50.7
Ciclev10008173m.g Citrus clementina HOM05D000046 ORTHO05D000457 9.0e-10 67.0 67 49.3
FvH4_4g05960 Fragaria vesca HOM05D000046 ORTHO05D000457 9.0e-10 67.0 65 52.3
FAN07G1223 Fragaria x ananassa HOM05D000046 ORTHO05D000457 9.0e-10 67.0 65 52.3
FAN12G3752 Fragaria x ananassa HOM05D000046 ORTHO05D000457 9.0e-10 67.0 65 52.3
Psat7g020880 Pisum sativum HOM05D000046 ORTHO05D000457 9.0e-10 67.0 69 49.3
RcHm_v2.0_Chr4g0397161 Rosa chinensis HOM05D000046 ORTHO05D000457 9.0e-10 67.0 65 52.3
Duzib170G0883 Durio zibethinus HOM05D000046 ORTHO05D000457 1.2e-09 66.6 70 51.4
PGR044G1971 Punica granatum HOM05D000046 ORTHO05D000457 1.2e-09 66.6 94 41.5
ATR0626G218 Amborella trichopoda HOM05D000046 ORTHO05D000457 1.5e-09 66.2 66 51.5
FAN22G0661 Fragaria x ananassa HOM05D000046 ORTHO05D000457 1.5e-09 66.2 65 52.3
TAR626G1537 Trochodendron aralioides HOM05D000046 ORTHO05D000457 1.5e-09 66.2 70 48.6
Gohir.A13G207300 Gossypium hirsutum HOM05D000046 ORTHO05D000457 2.0e-09 65.9 68 48.5
Manes.02G223300 Manihot esculenta HOM05D000046 ORTHO05D000457 2.0e-09 65.9 68 51.5
Zm00001eb389680 Zea mays HOM05D000046 ORTHO05D000457 2.0e-09 65.9 67 49.3
arahy.Tifrunner.gnm1.ann1.BLXL3H Arachis hypogaea HOM05D000046 ORTHO05D000457 2.6e-09 65.5 67 49.3
arahy.Tifrunner.gnm1.ann1.PC8EL3 Arachis hypogaea HOM05D000046 ORTHO05D000457 2.6e-09 65.5 67 49.3
Peaxi162Scf00474g00523 Petunia axillaris HOM05D000046 ORTHO05D000457 2.6e-09 65.5 63 55.6
Zm00001eb274440 Zea mays HOM05D000046 ORTHO05D010500 2.6e-09 65.5 67 49.3
Atru.chr7.1005 Acer truncatum HOM05D000046 ORTHO05D000457 3.4e-09 65.1 67 49.3
COL.COLO4_06605 Corchorus olitorius HOM05D000046 ORTHO05D000457 3.4e-09 65.1 69 50.7
ECA234G3527 Erigeron canadensis HOM05D000046 ORTHO05D000457 3.4e-09 65.1 67 50.7
Thecc.09G201100 Theobroma cacao HOM05D000046 ORTHO05D000457 3.4e-09 65.1 70 48.6
TPR.G25450 Trifolium pratense HOM05D000046 ORTHO05D000457 3.4e-09 65.1 67 49.3
CiPaw.15G161700 Carya illinoinensis HOM05D000046 ORTHO05D000457 4.5e-09 64.7 66 48.5
FAN17G2327 Fragaria x ananassa HOM05D000046 ORTHO05D000457 4.5e-09 64.7 65 49.2
Gohir.D13G211826 Gossypium hirsutum HOM05D000046 ORTHO05D000457 4.5e-09 64.7 68 48.5
Gorai.013G242000 Gossypium raimondii HOM05D000046 ORTHO05D000457 4.5e-09 64.7 68 48.5
GSVIVG01032269001 Vitis vinifera HOM05D000046 ORTHO05D000457 4.5e-09 64.7 68 48.5
Cc06_g23860 Coffea canephora HOM05D000046 ORTHO05D000457 5.9e-09 64.3 64 53.1
Nitab4.5_0003139g0050 Nicotiana tabacum HOM05D000046 ORTHO05D000457 5.9e-09 64.3 63 55.6
HanXRQChr12g0358591 Helianthus annuus HOM05D000046 ORTHO05D000457 7.6e-09 63.9 83 45.8
Ah.10g032710 Amaranthus hybridus HOM05D000046 ORTHO05D000457 1.0e-08 63.5 84 42.9
Gohir.A05G407500 Gossypium hirsutum HOM05D000046 ORTHO05D000457 1.0e-08 63.5 51 56.9
Gohir.D04G008100 Gossypium hirsutum HOM05D000046 ORTHO05D000457 1.0e-08 63.5 51 56.9
Gorai.012G009800 Gossypium raimondii HOM05D000046 ORTHO05D000457 1.0e-08 63.5 51 56.9
Sopen07g022290 Solanum pennellii HOM05D000046 ORTHO05D000457 1.0e-08 63.5 97 42.3
CAN.G86.9 Capsicum annuum HOM05D000046 ORTHO05D000457 1.3e-08 63.2 96 39.6
Nitab4.5_0000170g0100 Nicotiana tabacum HOM05D000046 ORTHO05D000457 1.3e-08 63.2 63 54.0
Oeu008636.1 Olea europaea HOM05D000046 ORTHO05D000457 1.3e-08 63.2 70 50.0
Aa31sc130G80 Aethionema arabicum HOM05D000046 ORTHO05D000457 1.7e-08 62.8 71 47.9
Lalb_Chr05g0223821 Lupinus albus HOM05D000046 ORTHO05D000457 1.7e-08 62.8 80 42.5
Sp6g07440 Schrenkiella parvula HOM05D000046 ORTHO05D000457 1.7e-08 62.8 71 49.3
AUR62027986 Chenopodium quinoa HOM05D000046 ORTHO05D000457 2.2e-08 62.4 66 47.0
Medtr8g100155 Medicago truncatula HOM05D000046 ORTHO05D000457 2.2e-08 62.4 69 49.3
Prupe.1G063100 Prunus persica HOM05D000046 ORTHO05D000457 2.2e-08 62.4 65 50.8
Thhalv10028670m.g Eutrema salsugineum HOM05D000046 ORTHO05D000457 2.9e-08 62.0 71 50.7
Lj4g0008987 Lotus japonicus HOM05D000046 ORTHO05D000457 3.8e-08 61.6 69 44.9
MBI13_g33568_MAGBIO Magnolia biondii HOM05D002781 ORTHO05D003382 3.8e-08 61.6 65 50.8
Migut.L01921 Erythranthe guttata HOM05D000046 ORTHO05D000457 5.0e-08 61.2 71 47.9
Gohir.D08G025900 Gossypium hirsutum HOM05D000046 ORTHO05D000457 5.0e-08 61.2 72 44.4
Lsat_1_v5_gn_5_80941 Lactuca sativa HOM05D000046 ORTHO05D000457 6.5e-08 60.8 62 54.8
Os06g0663200 Oryza sativa ssp. japonica HOM05D000046 ORTHO05D000457 6.5e-08 60.8 65 49.2
SalBow6G7180 Salvia bowleyana HOM05D000046 ORTHO05D000457 6.5e-08 60.8 69 47.8
Rhsim01G0108600 Rhododendron simsii HOM05D000046 ORTHO05D000452 8.5e-08 60.5 49 57.1
Solyc07g042590.4 Solanum lycopersicum HOM05D000046 ORTHO05D000457 8.5e-08 60.5 64 54.7
Hma1.2p1_1704F.1_g298340 Hydrangea macrophylla HOM05D000046 ORTHO05D000457 1.1e-07 60.1 50 56.0
CDE05G3186 Ceratophyllum demersum HOM05D000570 ORTHO05D001174 1.4e-07 59.7 53 54.7
CsaV3_2G009210 Cucumis sativus L. HOM05D000046 ORTHO05D000457 1.4e-07 59.7 48 58.3
Gorai.004G022200 Gossypium raimondii HOM05D000046 ORTHO05D000457 1.4e-07 59.7 72 43.1
PGSC0003DMG400013545 Solanum tuberosum HOM05D000046 ORTHO05D000457 1.4e-07 59.7 97 40.2
AT2G07180 Arabidopsis thaliana HOM05D000046 ORTHO05D000457 1.9e-07 59.3 78 46.2
Peaxi162Scf00928g00233 Petunia axillaris HOM05D000046 ORTHO05D000457 2.5e-07 58.9 44 59.1
AL3G44110 Arabidopsis lyrata HOM05D000046 ORTHO05D000457 3.2e-07 58.5 71 47.9
MD16G1236700 Malus domestica HOM05D000046 ORTHO05D000457 3.2e-07 58.5 65 49.2
Gohir.A08G015600 Gossypium hirsutum HOM05D000046 ORTHO05D000457 5.5e-07 57.8 72 43.1
Lalb_Chr09g0332011 Lupinus albus HOM05D000046 ORTHO05D000457 5.5e-07 57.8 69 43.5
PGR142G3210 Punica granatum HOM05D000046 ORTHO05D000457 7.2e-07 57.4 66 47.0
BcaB01g01448 Brassica carinata HOM05D000046 ORTHO05D000457 9.3e-07 57.0 74 40.5
CAN.G816.20 Capsicum annuum HOM05D000046 ORTHO05D000457 1.2e-06 56.6 41 63.4
DCAR_020456 Daucus carota HOM05D000046 ORTHO05D000457 1.2e-06 56.6 41 63.4
Hund19358 Selenicereus undatus HOM05D000046 ORTHO05D000457 1.2e-06 56.6 70 41.4
MSTRG.26515 Avicennia marina HOM05D000046 ORTHO05D000457 1.6e-06 56.2 70 47.1
THA.LOC104815307 Tarenaya hassleriana HOM05D000046 ORTHO05D000457 1.6e-06 56.2 73 43.8
BcaB05g23923 Brassica carinata HOM05D000046 ORTHO05D000457 2.1e-06 55.8 74 41.9
BcaC04g21011 Brassica carinata HOM05D000046 ORTHO05D000457 2.1e-06 55.8 66 45.5
A09p28860 Brassica napus HOM05D000046 ORTHO05D000457 2.1e-06 55.8 66 45.5
C09p36680 Brassica napus HOM05D000046 ORTHO05D000457 2.1e-06 55.8 66 45.5
BolC9t56499H Brassica oleracea HOM05D000046 ORTHO05D000457 2.1e-06 55.8 66 45.5
BraA09t38448Z Brassica rapa HOM05D000046 ORTHO05D000457 2.1e-06 55.8 66 45.5
Carub.0013s0003 Capsella rubella HOM05D000046 ORTHO05D000457 2.1e-06 55.8 66 47.0
SEGI_33077 Sequoiadendron giganteum HOM05D000046 ORTHO05D000457 2.1e-06 55.8 65 47.7
ClCG11G011240 Citrullus lanatus HOM05D000046 ORTHO05D000457 2.7e-06 55.5 47 55.3
Nn5g27057 Nelumbo nucifera HOM05D000046 ORTHO05D000457 2.7e-06 55.5 65 47.7
Solyc12g009310.2 Solanum lycopersicum HOM05D000046 ORTHO05D000457 3.6e-06 55.1 41 61.0
A02p26750 Brassica napus HOM05D000046 ORTHO05D000457 4.6e-06 54.7 74 40.5
BraA02t07679Z Brassica rapa HOM05D000046 ORTHO05D000457 4.6e-06 54.7 74 40.5
MELO3C015524.2 Cucumis melo HOM05D000046 ORTHO05D000457 4.6e-06 54.7 69 44.9
CsaV3_1G041090 Cucumis sativus L. HOM05D000046 ORTHO05D000457 4.6e-06 54.7 69 44.9
PGSC0003DMG400002894 Solanum tuberosum HOM05D000046 ORTHO05D000457 4.6e-06 54.7 41 61.0
CARHR104010 Cardamine hirsuta HOM05D000046 ORTHO05D000457 6.1e-06 54.3 75 41.3
HanXRQChr09g0245961 Helianthus annuus HOM05D000046 ORTHO05D000457 7.9e-06 53.9 41 53.7


User provided reference genes

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