Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G1922 Ceratophyllum demersum HOM05D004751 ORTHO05D005819 0.0e+00 1642.9 827 100.0
MBI15_g07764_MAGBIO Magnolia biondii HOM05D004751 ORTHO05D005819 1.5e-302 1042.7 838 65.8
TAR626G1784 Trochodendron aralioides HOM05D004751 ORTHO05D005819 9.6e-302 1040.0 839 65.3
TAR639G0003 Trochodendron aralioides HOM05D004751 ORTHO05D005819 9.6e-302 1040.0 839 65.3
Thecc.09G099100 Theobroma cacao HOM05D004751 ORTHO05D005819 7.6e-299 1030.4 837 64.0
TAR383G0360 Trochodendron aralioides HOM05D004751 ORTHO05D005819 1.3e-298 1029.6 840 64.6
Dinv42256 Davidia involucrata HOM05D004751 ORTHO05D005819 1.7e-298 1029.2 838 64.2
Duzib150G1241 Durio zibethinus HOM05D004751 ORTHO05D005819 7.1e-297 1023.8 840 63.0
QL02p040907 Quercus lobata HOM05D004751 ORTHO05D005819 1.9e-294 1015.8 835 63.8
PSO210G2464 Papaver somniferum HOM05D004751 ORTHO05D005819 5.6e-294 1014.2 841 64.6
Prupe.2G065200 Prunus persica HOM05D004751 ORTHO05D005819 1.3e-293 1013.1 838 64.4
PSO210G3406 Papaver somniferum HOM05D004751 ORTHO05D005819 3.6e-293 1011.5 841 64.4
Manes.16G108000 Manihot esculenta HOM05D004751 ORTHO05D005819 1.2e-291 1006.5 832 63.1
Aqoxy7G03607 Aquilegia oxysepala HOM05D004751 ORTHO05D005819 4.4e-291 1004.6 836 62.9
Atru.chr7.1477 Acer truncatum HOM05D004751 ORTHO05D005819 1.3e-290 1003.0 839 63.3
RcHm_v2.0_Chr1g0331571 Rosa chinensis HOM05D004751 ORTHO05D005819 6.4e-290 1000.7 838 62.3
Hma1.2p1_0012F.1_g007400 Hydrangea macrophylla HOM05D004751 ORTHO05D005819 8.4e-290 1000.3 835 62.3
Gorai.009G028000 Gossypium raimondii HOM05D004751 ORTHO05D005819 9.3e-289 996.9 837 62.6
Gohir.A05G026300 Gossypium hirsutum HOM05D004751 ORTHO05D005819 2.1e-288 995.7 841 62.1
FvH4_7g05110 Fragaria vesca HOM05D004751 ORTHO05D005819 7.9e-288 993.8 839 61.9
FAN06G4551 Fragaria x ananassa HOM05D004751 ORTHO05D005819 1.7e-287 992.6 839 61.9
Gohir.D05G027800 Gossypium hirsutum HOM05D004751 ORTHO05D005819 5.1e-287 991.1 837 62.4
MD02G1262100 Malus domestica HOM05D004751 ORTHO05D005819 5.1e-287 991.1 838 63.0
Cpa.g.sc78.25 Carica papaya HOM05D004751 ORTHO05D005819 4.3e-286 988.0 836 61.4
FAN01G0060 Fragaria x ananassa HOM05D004751 ORTHO05D005819 7.3e-286 987.3 836 61.6
Ciclev10007242m.g Citrus clementina HOM05D004751 ORTHO05D005819 3.6e-285 984.9 839 62.0
Haze_25834 Corylus avellana HOM05D004751 ORTHO05D005819 6.9e-284 980.7 837 61.8
CANSAT56G3494 Cannabis sativa HOM05D004751 ORTHO05D005819 9.0e-284 980.3 828 61.5
Actinidia17515 Actinidia chinensis HOM05D004751 ORTHO05D005819 2.6e-283 978.8 837 60.8
CSS0000434 Camellia sinensis var. sinensis HOM05D004751 ORTHO05D005819 2.6e-283 978.8 838 61.9
CSS0026223 Camellia sinensis var. sinensis HOM05D004751 ORTHO05D005819 2.6e-283 978.8 838 61.9
Cfa003165 Carpinus fangiana HOM05D004751 ORTHO05D005819 4.5e-283 978.0 836 61.6
MD07G1058300 Malus domestica HOM05D004751 ORTHO05D005819 9.9e-283 976.9 838 61.8
TWI34G0109 Tripterygium wilfordii HOM05D004751 ORTHO05D005819 2.7e-280 968.8 836 61.7
ClCG03G016070 Citrullus lanatus HOM05D004751 ORTHO05D005819 6.0e-280 967.6 844 60.9
Sabra06G0121300 Salix brachista HOM05D004751 ORTHO05D005819 6.0e-280 967.6 832 61.1
Rhsim05G0038900 Rhododendron simsii HOM05D004751 ORTHO05D005819 7.9e-280 967.2 837 60.3
vmacro10847 Vaccinium macrocarpon HOM05D004751 ORTHO05D005819 3.9e-279 964.9 837 60.7
GSVIVG01015287001 Vitis vinifera HOM05D004751 ORTHO05D005819 5.1e-279 964.5 820 61.8
Eucgr.C03719 Eucalyptus grandis HOM05D004751 ORTHO05D005819 6.7e-279 964.1 836 60.4
CsaV3_1G039890 Cucumis sativus L. HOM05D004751 ORTHO05D005819 1.9e-278 962.6 840 60.7
Sopen04g006260 Solanum pennellii HOM05D004751 ORTHO05D005819 5.6e-278 961.1 840 60.2
PGSC0003DMG400023589 Solanum tuberosum HOM05D004751 ORTHO05D005819 2.1e-277 959.1 841 60.5
MELO3C015420.2 Cucumis melo HOM05D004751 ORTHO05D005819 2.8e-277 958.7 840 60.5
Potri.006G153100 Populus trichocarpa HOM05D004751 ORTHO05D005819 3.7e-277 958.4 836 61.4
DCAR_028653 Daucus carota HOM05D004751 ORTHO05D005819 8.1e-277 957.2 840 59.8
CAN.G787.12 Capsicum annuum HOM05D004751 ORTHO05D005819 2.6e-275 952.2 841 59.9
TWI32G0016 Tripterygium wilfordii HOM05D004751 ORTHO05D005819 2.9e-274 948.7 835 60.2
EL10Ac8g18369 Beta vulgaris HOM05D004751 ORTHO05D005819 1.4e-273 946.4 836 59.4
Migut.K00548 Erythranthe guttata HOM05D004751 ORTHO05D005819 7.9e-272 940.6 841 58.0
Hund26286 Selenicereus undatus HOM05D004751 ORTHO05D005819 1.0e-271 940.3 822 59.2
ECA240G2374 Erigeron canadensis HOM05D004751 ORTHO05D005819 2.3e-271 939.1 824 60.1
Psat1g048040 Pisum sativum HOM05D004751 ORTHO05D005819 6.7e-271 937.6 836 60.0
PGR102G2506 Punica granatum HOM05D004751 ORTHO05D005819 1.5e-270 936.4 835 61.3
arahy.Tifrunner.gnm1.ann1.U02M06 Arachis hypogaea HOM05D004751 ORTHO05D005819 3.3e-270 935.3 836 60.0
arahy.Tifrunner.gnm1.ann1.11NKIJ Arachis hypogaea HOM05D004751 ORTHO05D005819 7.4e-270 934.1 836 60.0
Glyma.01G006600 Glycine max HOM05D004751 ORTHO05D005819 7.4e-270 934.1 836 59.8
SalBow1G2004 Salvia bowleyana HOM05D004751 ORTHO05D005819 7.4e-270 934.1 841 58.7
Cc06_g10590 Coffea canephora HOM05D004751 ORTHO05D005819 1.6e-269 932.9 841 58.7
Glyma.07G125200 Glycine max HOM05D004751 ORTHO05D005819 4.8e-269 931.4 837 59.7
Medtr6g088835 Medicago truncatula HOM05D004751 ORTHO05D005819 8.2e-269 930.6 836 59.0
AUR62021393 Chenopodium quinoa HOM05D004751 ORTHO05D005819 1.1e-268 930.2 840 58.5
Ah.09g230480 Amaranthus hybridus HOM05D004751 ORTHO05D005819 1.4e-268 929.9 836 58.5
SGA_v2.0_scaffold19G08722 Striga asiatica HOM05D004751 ORTHO05D005819 1.2e-267 926.8 840 58.3
AUR62010880 Chenopodium quinoa HOM05D004751 ORTHO05D005819 2.0e-267 926.0 839 58.3
THA.LOC104814595 Tarenaya hassleriana HOM05D004751 ORTHO05D005819 2.6e-267 925.6 838 58.8
TPR.G31000 Trifolium pratense HOM05D004751 ORTHO05D005819 1.0e-266 923.7 834 59.5
Sed0000923 Sechium edule HOM05D004751 ORTHO05D005819 2.2e-266 922.5 844 58.4
Peaxi162Scf01157g00011 Petunia axillaris HOM05D004751 ORTHO05D005819 2.9e-266 922.2 841 58.5
VMungo0464G0426 Vigna mungo HOM05D004751 ORTHO05D005819 1.4e-265 919.8 836 59.4
Phvul.004G175100 Phaseolus vulgaris HOM05D004751 ORTHO05D005819 1.9e-265 919.5 837 59.5
Lj2g0020264 Lotus japonicus HOM05D004751 ORTHO05D005819 2.5e-265 919.1 836 60.0
Lsat_1_v5_gn_7_39580 Lactuca sativa HOM05D004751 ORTHO05D005819 3.2e-265 918.7 833 59.3
Ca_25582_v3 Cicer arietinum L. HOM05D004751 ORTHO05D005819 5.5e-265 917.9 838 59.5
arahy.Tifrunner.gnm1.ann1.YRLX64 Arachis hypogaea HOM05D004751 ORTHO05D005819 1.6e-264 916.4 833 57.5
Lalb_Chr14g0371941 Lupinus albus HOM05D004751 ORTHO05D005819 8.7e-263 910.6 836 58.9
Solyc04g012170.4 Solanum lycopersicum HOM05D004751 ORTHO05D005819 5.3e-260 901.4 841 57.9
COL.COLO4_34728 Corchorus olitorius HOM05D004751 ORTHO05D005819 2.6e-259 899.0 838 59.2
MSTRG.26388 Avicennia marina HOM05D004751 ORTHO05D005819 3.4e-259 898.7 841 57.1
arahy.Tifrunner.gnm1.ann1.9BR2YY Arachis hypogaea HOM05D004751 ORTHO05D005819 4.5e-259 898.3 833 57.0
Oeu021455.1 Olea europaea HOM05D004751 ORTHO05D005819 2.2e-258 896.0 816 58.5
AT4G29380 Arabidopsis thaliana HOM05D004751 ORTHO05D005819 1.2e-256 890.2 839 56.4
Lj7C667T4 Lonicera japonica HOM05D004751 ORTHO05D005819 7.9e-256 887.5 825 57.9
Sp7g27250 Schrenkiella parvula HOM05D004751 ORTHO05D005819 2.3e-255 885.9 832 56.7
AL7G23020 Arabidopsis lyrata HOM05D004751 ORTHO05D005819 6.7e-255 884.4 839 56.0
HanXRQChr03g0061061 Helianthus annuus HOM05D004751 ORTHO05D005819 9.7e-254 880.6 828 57.9
Aa31LG2G21070 Aethionema arabicum HOM05D004751 ORTHO05D005819 1.3e-253 880.2 835 56.8
ATR0730G043 Amborella trichopoda HOM05D004751 ORTHO05D005819 9.1e-252 874.0 832 57.9
Thhalv10024212m.g Eutrema salsugineum HOM05D004751 ORTHO05D005819 5.9e-251 871.3 833 56.1
Carub.0007s1117 Capsella rubella HOM05D004751 ORTHO05D005819 3.8e-250 868.6 838 55.3
BolC1t00970H Brassica oleracea HOM05D004751 ORTHO05D005819 2.2e-245 852.8 832 55.2
A01p08650 Brassica napus HOM05D004751 ORTHO05D005819 1.8e-244 849.7 832 55.2
C01p10120 Brassica napus HOM05D004751 ORTHO05D005819 4.1e-244 848.6 832 54.9
BraA01t00815Z Brassica rapa HOM05D004751 ORTHO05D005819 4.1e-244 848.6 832 55.0
Sc08g0008060 Simmondsia chinensis HOM05D004751 ORTHO05D005819 4.0e-239 832.0 776 57.9
unitig_8.g4485 Utricularia gibba HOM05D004751 ORTHO05D005819 1.0e-234 817.4 835 53.7
Oeu018580.2 Olea europaea HOM05D004751 ORTHO05D005819 3.8e-234 815.5 822 54.5
BcaC09g51723 Brassica carinata HOM05D004751 ORTHO05D005819 2.2e-213 746.5 832 50.6
CARHR237190 Cardamine hirsuta HOM05D004751 ORTHO05D005819 9.2e-204 714.5 712 55.5
Zm00001eb257890 Zea mays HOM05D004751 ORTHO05D005819 3.9e-202 709.1 835 49.0
SHI02649 Sapria himalayana HOM05D004751 ORTHO05D005819 3.1e-167 593.2 692 49.6
Hund09091 Selenicereus undatus HOM05D004751 ORTHO05D005819 2.6e-166 590.1 773 47.3
SEGI_30648 Sequoiadendron giganteum HOM05D004751 ORTHO05D005819 2.4e-164 583.6 857 44.0
Pp3c9_3860 Physcomitrium patens HOM05D004751 ORTHO05D005819 9.3e-164 581.6 937 42.0
Pp3c15_10000 Physcomitrium patens HOM05D004751 ORTHO05D005819 2.1e-163 580.5 937 42.9
Zm00001eb192340 Zea mays HOM05D004751 ORTHO05D005819 6.7e-162 575.5 704 49.4
Dinv36677 Davidia involucrata HOM05D004751 ORTHO05D005819 4.0e-159 566.2 499 57.7
Mapoly0002s0158 Marchantia polymorpha HOM05D004751 ORTHO05D005819 3.9e-146 523.1 903 40.1
AagrBONN_evm.TU.Sc2ySwM_228.4976 Anthoceros agrestis HOM05D004751 ORTHO05D005819 2.5e-140 503.8 917 39.4
Nitab4.5_0001242g0100 Nicotiana tabacum HOM05D004751 ORTHO05D005819 2.4e-135 487.3 334 66.5
SMO347G0104 Selaginella moellendorffii HOM05D004751 ORTHO05D005819 2.4e-135 487.3 793 40.1
Os02g0796700 Oryza sativa ssp. japonica HOM05D004751 ORTHO05D005819 3.1e-135 486.9 389 59.6
Nitab4.5_0015727g0010 Nicotiana tabacum HOM05D004751 ORTHO05D005819 4.9e-104 383.3 263 65.4
Ca_25581_v3 Cicer arietinum L. HOM05D004751 ORTHO05D005819 2.4e-103 380.9 545 41.3
Lsat_1_v5_gn_0_39700 Lactuca sativa HOM05D004751 ORTHO05D005819 5.7e-97 359.8 272 64.7
Dinv36676 Davidia involucrata HOM05D004751 ORTHO05D005819 2.0e-81 308.1 235 72.3
Nitab4.5_0004673g0040 Nicotiana tabacum HOM05D004751 ORTHO05D005819 6.6e-77 293.1 238 67.2
RcHm_v2.0_Chr1g0332481 Rosa chinensis HOM05D004751 ORTHO05D005819 4.7e-75 287.0 195 66.7
CBR_g47981 Chara braunii HOM05D004751 ORTHO05D005819 6.4e-72 276.6 1163 26.0
CiPaw.03G223300 Carya illinoinensis HOM05D004751 ORTHO05D005819 4.7e-67 260.4 177 67.2
PRCOL_00004168 Prasinoderma coloniale HOM05D004751 ORTHO05D005819 1.3e-56 225.7 863 26.1
Cre06.g290500 Chlamydomonas reinhardtii HOM05D004751 ORTHO05D005819 2.3e-45 188.3 941 24.1
RcHm_v2.0_Chr1g0332501 Rosa chinensis HOM05D004751 ORTHO05D005819 2.5e-44 184.9 216 49.1
PSO832G2682 Papaver somniferum HOM05D004751 ORTHO05D005819 2.8e-19 101.7 232 38.4
SHI02652 Sapria himalayana HOM05D004751 ORTHO05D005819 1.5e-17 95.9 88 53.4
ATR0661G544 Amborella trichopoda HOM05D004751 ORTHO05D005819 1.7e-16 92.4 71 56.3
Ca_25584_v3 Cicer arietinum L. HOM05D004751 ORTHO05D005819 2.2e-16 92.0 58 67.2
RcHm_v2.0_Chr1g0332491 Rosa chinensis HOM05D004751 ORTHO05D005819 2.0e-12 79.0 111 39.6


User provided reference genes

Program Settings