Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G1916 Ceratophyllum demersum HOM05D001937 ORTHO05D007024 0.0e+00 2464.9 1217 100.0
CDE07G0097 Ceratophyllum demersum HOM05D001937 ORTHO05D007024 0.0e+00 2126.3 1192 89.8
MBI05_g10862_MAGBIO Magnolia biondii HOM05D001937 ORTHO05D007024 0.0e+00 1991.5 1273 77.2
PSO017G7212 Papaver somniferum HOM05D001937 ORTHO05D007024 0.0e+00 1964.9 1273 76.0
Aqoxy4G02972 Aquilegia oxysepala HOM05D001937 ORTHO05D007024 0.0e+00 1956.0 1271 75.7
Aqoxy2G01413 Aquilegia oxysepala HOM05D001937 ORTHO05D007024 0.0e+00 1951.4 1271 75.6
PSO478G1455 Papaver somniferum HOM05D001937 ORTHO05D007024 0.0e+00 1948.3 1273 75.3
Haze_10549 Corylus avellana HOM05D001937 ORTHO05D007024 0.0e+00 1942.5 1271 75.5
Lj1P823T23 Lonicera japonica HOM05D001937 ORTHO05D007024 0.0e+00 1939.5 1271 75.5
Cfa005699 Carpinus fangiana HOM05D001937 ORTHO05D007024 0.0e+00 1938.7 1271 75.5
Hma1.2p1_0587F.1_g184190 Hydrangea macrophylla HOM05D001937 ORTHO05D007024 0.0e+00 1935.6 1272 75.8
QL11p024047 Quercus lobata HOM05D001937 ORTHO05D007024 0.0e+00 1928.3 1272 74.7
CSS0034620 Camellia sinensis var. sinensis HOM05D001937 ORTHO05D007024 0.0e+00 1926.4 1271 75.5
Atru.chr12.1853 Acer truncatum HOM05D001937 ORTHO05D007024 0.0e+00 1925.6 1272 75.3
CSS0040995 Camellia sinensis var. sinensis HOM05D001937 ORTHO05D007024 0.0e+00 1925.6 1271 75.5
Manes.11G123000 Manihot esculenta HOM05D001937 ORTHO05D007024 0.0e+00 1924.4 1271 74.9
Gorai.005G213100 Gossypium raimondii HOM05D001937 ORTHO05D007024 0.0e+00 1923.3 1272 75.2
Ciclev10018533m.g Citrus clementina HOM05D001937 ORTHO05D007024 0.0e+00 1922.1 1271 75.1
Gohir.A03G167300 Gossypium hirsutum HOM05D001937 ORTHO05D007024 0.0e+00 1921.4 1272 75.2
Gohir.D02G190400 Gossypium hirsutum HOM05D001937 ORTHO05D007024 0.0e+00 1921.4 1272 75.1
Prupe.2G098100 Prunus persica HOM05D001937 ORTHO05D007024 0.0e+00 1920.2 1272 74.3
COL.COLO4_33143 Corchorus olitorius HOM05D001937 ORTHO05D007024 0.0e+00 1917.9 1271 75.2
Sabra04G0061200 Salix brachista HOM05D001937 ORTHO05D007024 0.0e+00 1917.5 1274 75.3
Potri.004G091000 Populus trichocarpa HOM05D001937 ORTHO05D007024 0.0e+00 1914.0 1274 75.2
Lj4g0006057 Lotus japonicus HOM05D001937 ORTHO05D007024 0.0e+00 1912.9 1272 74.9
EL10Ac7g17851 Beta vulgaris HOM05D001937 ORTHO05D007024 0.0e+00 1912.1 1273 74.8
Duzib132G1189 Durio zibethinus HOM05D001937 ORTHO05D007024 0.0e+00 1912.1 1271 74.6
CiPaw.10G131100 Carya illinoinensis HOM05D001937 ORTHO05D007024 0.0e+00 1911.3 1271 74.4
MD07G1077100 Malus domestica HOM05D001937 ORTHO05D007024 0.0e+00 1911.3 1272 74.0
THA.LOC104823845 Tarenaya hassleriana HOM05D001937 ORTHO05D007024 0.0e+00 1910.2 1271 74.0
Nitab4.5_0000761g0030 Nicotiana tabacum HOM05D001937 ORTHO05D007024 0.0e+00 1909.8 1271 74.6
RcHm_v2.0_Chr1g0337071 Rosa chinensis HOM05D001937 ORTHO05D007024 0.0e+00 1909.8 1270 74.3
Aa31LG9G17330 Aethionema arabicum HOM05D001937 ORTHO05D007024 0.0e+00 1907.9 1273 74.0
AUR62008924 Chenopodium quinoa HOM05D001937 ORTHO05D007024 0.0e+00 1906.3 1272 74.8
Thecc.02G153900 Theobroma cacao HOM05D001937 ORTHO05D007024 0.0e+00 1906.3 1271 74.4
FAN03G1993 Fragaria x ananassa HOM05D001937 ORTHO05D007024 0.0e+00 1905.2 1270 74.1
FvH4_7g07120 Fragaria vesca HOM05D001937 ORTHO05D007024 0.0e+00 1904.0 1270 74.3
arahy.Tifrunner.gnm1.ann1.EYG9NG Arachis hypogaea HOM05D001937 ORTHO05D007024 0.0e+00 1903.6 1272 74.8
Duzib248G1173 Durio zibethinus HOM05D001937 ORTHO05D007024 0.0e+00 1903.3 1271 74.3
TWI12G0886 Tripterygium wilfordii HOM05D001937 ORTHO05D007024 0.0e+00 1902.9 1271 74.2
Thhalv10027622m.g Eutrema salsugineum HOM05D001937 ORTHO05D007024 0.0e+00 1901.7 1271 73.6
FAN06G4695 Fragaria x ananassa HOM05D001937 ORTHO05D007024 0.0e+00 1900.2 1270 74.2
Rhsim09G0056700 Rhododendron simsii HOM05D001937 ORTHO05D007024 0.0e+00 1900.2 1267 74.4
HanXRQChr10g0312981 Helianthus annuus HOM05D001937 ORTHO05D007024 0.0e+00 1899.8 1269 74.1
Migut.N00430 Erythranthe guttata HOM05D001937 ORTHO05D007024 0.0e+00 1899.4 1271 73.4
Zm00001eb021240 Zea mays HOM05D001937 ORTHO05D007024 0.0e+00 1898.6 1270 73.5
Glyma.08G069400 Glycine max HOM05D001937 ORTHO05D007024 0.0e+00 1897.9 1272 74.4
BraA07t29656Z Brassica rapa HOM05D001937 ORTHO05D007024 0.0e+00 1897.5 1271 73.2
BolC6t36984H Brassica oleracea HOM05D001937 ORTHO05D007024 0.0e+00 1897.1 1271 73.2
Cpa.g.sc41.77 Carica papaya HOM05D001937 ORTHO05D007024 0.0e+00 1896.7 1272 74.2
Sc14g0006180 Simmondsia chinensis HOM05D001937 ORTHO05D007024 0.0e+00 1896.7 1271 74.4
AUR62001097 Chenopodium quinoa HOM05D001937 ORTHO05D007024 0.0e+00 1896.3 1271 74.3
C06p17940 Brassica napus HOM05D001937 ORTHO05D007024 0.0e+00 1895.9 1271 73.2
Carub.0007s3301 Capsella rubella HOM05D001937 ORTHO05D007024 0.0e+00 1895.9 1271 73.6
A07p19500 Brassica napus HOM05D001937 ORTHO05D007024 0.0e+00 1895.6 1271 73.2
Sp7g04200 Schrenkiella parvula HOM05D001937 ORTHO05D007024 0.0e+00 1894.8 1271 73.2
Sopen09g005280 Solanum pennellii HOM05D001937 ORTHO05D007024 0.0e+00 1894.4 1271 73.9
CsaV3_6G000030 Cucumis sativus L. HOM05D001937 ORTHO05D007024 0.0e+00 1894.0 1270 74.6
Ah.08g214380 Amaranthus hybridus HOM05D001937 ORTHO05D007024 0.0e+00 1892.5 1272 73.7
DCAR_003140 Daucus carota HOM05D001937 ORTHO05D007024 0.0e+00 1892.5 1271 74.2
Solyc09g010560.3 Solanum lycopersicum HOM05D001937 ORTHO05D007024 0.0e+00 1892.5 1271 73.8
CAN.G97.40 Capsicum annuum HOM05D001937 ORTHO05D007024 0.0e+00 1891.7 1274 73.7
MELO3C021250.2 Cucumis melo HOM05D001937 ORTHO05D007024 0.0e+00 1891.3 1270 74.3
Medtr4g093870 Medicago truncatula HOM05D001937 ORTHO05D007024 0.0e+00 1891.3 1272 73.4
Ca_18373_v3 Cicer arietinum L. HOM05D001937 ORTHO05D007024 0.0e+00 1890.9 1272 73.6
FAN10G2279 Fragaria x ananassa HOM05D001937 ORTHO05D007024 0.0e+00 1890.5 1264 74.2
AT5G37830 Arabidopsis thaliana HOM05D001937 ORTHO05D007024 0.0e+00 1890.2 1271 73.2
AL7G46730 Arabidopsis lyrata HOM05D001937 ORTHO05D007024 0.0e+00 1889.8 1271 73.0
Phvul.002G211700 Phaseolus vulgaris HOM05D001937 ORTHO05D007024 0.0e+00 1888.2 1272 73.7
Eucgr.I01066 Eucalyptus grandis HOM05D001937 ORTHO05D007024 0.0e+00 1886.7 1275 74.1
Nn2g12806 Nelumbo nucifera HOM05D001937 ORTHO05D007024 0.0e+00 1885.5 1251 74.3
MSTRG.3701 Avicennia marina HOM05D001937 ORTHO05D007024 0.0e+00 1885.2 1271 73.8
CARHR214920 Cardamine hirsuta HOM05D001937 ORTHO05D007024 0.0e+00 1885.2 1271 73.2
CANSAT01G0692 Cannabis sativa HOM05D001937 ORTHO05D007024 0.0e+00 1883.6 1272 74.0
Os01g0966000 Oryza sativa ssp. japonica HOM05D001937 ORTHO05D007024 0.0e+00 1882.8 1270 73.5
Cc09_g08410 Coffea canephora HOM05D001937 ORTHO05D007024 0.0e+00 1882.5 1271 74.1
PGSC0003DMG400008847 Solanum tuberosum HOM05D001937 ORTHO05D007024 0.0e+00 1881.3 1271 73.4
VMungo0251G0821 Vigna mungo HOM05D001937 ORTHO05D007024 0.0e+00 1878.2 1272 73.3
FAN01G0178 Fragaria x ananassa HOM05D001937 ORTHO05D007024 0.0e+00 1877.8 1270 73.6
SalBow1G8218 Salvia bowleyana HOM05D001937 ORTHO05D007024 0.0e+00 1876.3 1271 73.0
Lsat_1_v5_gn_6_11080 Lactuca sativa HOM05D001937 ORTHO05D007024 0.0e+00 1872.1 1271 73.0
BcaB02g08024 Brassica carinata HOM05D001937 ORTHO05D007024 0.0e+00 1864.7 1271 72.1
ECA233G4596 Erigeron canadensis HOM05D001937 ORTHO05D007024 0.0e+00 1862.0 1264 73.1
Actinidia06125 Actinidia chinensis HOM05D001937 ORTHO05D007024 0.0e+00 1861.3 1243 74.2
PGR142G3997 Punica granatum HOM05D001937 ORTHO05D007024 0.0e+00 1860.5 1275 72.5
ClCG05G003000 Citrullus lanatus HOM05D001937 ORTHO05D007024 0.0e+00 1854.3 1253 73.9
Sed0024188 Sechium edule HOM05D001937 ORTHO05D007024 0.0e+00 1854.3 1274 72.9
ATR0559G108 Amborella trichopoda HOM05D001937 ORTHO05D007024 0.0e+00 1847.8 1272 72.7
Dinv02213 Davidia involucrata HOM05D001937 ORTHO05D007024 0.0e+00 1833.5 1213 75.5
unitig_0.g658 Utricularia gibba HOM05D001937 ORTHO05D007024 0.0e+00 1828.9 1271 71.4
TPR.G2837 Trifolium pratense HOM05D001937 ORTHO05D007024 0.0e+00 1826.6 1272 72.0
Lalb_Chr05g0217681 Lupinus albus HOM05D001937 ORTHO05D007024 0.0e+00 1823.5 1273 71.5
ATR0559G369 Amborella trichopoda HOM05D001937 ORTHO05D007024 0.0e+00 1822.4 1270 71.1
arahy.Tifrunner.gnm1.ann1.TT5FZ7 Arachis hypogaea HOM05D001937 ORTHO05D007024 0.0e+00 1820.1 1272 70.3
SEGI_01532 Sequoiadendron giganteum HOM05D001937 ORTHO05D007024 0.0e+00 1772.3 1270 69.6
Aqoxy2G01407 Aquilegia oxysepala HOM05D001937 ORTHO05D007024 0.0e+00 1764.6 1163 75.4
Peaxi162Scf00165g01826 Petunia axillaris HOM05D001937 ORTHO05D007024 0.0e+00 1752.3 1271 69.8
SHI12658 Sapria himalayana HOM05D001937 ORTHO05D007024 0.0e+00 1730.3 1278 67.1
Mapoly0035s0055 Marchantia polymorpha HOM05D001937 ORTHO05D007024 0.0e+00 1676.0 1280 65.1
SMO147G0274 Selaginella moellendorffii HOM05D001937 ORTHO05D007024 0.0e+00 1659.4 1276 65.2
AagrBONN_evm.TU.Sc2ySwM_368.2008 Anthoceros agrestis HOM05D001937 ORTHO05D007024 0.0e+00 1654.8 1245 67.2
BcaC08g44352 Brassica carinata HOM05D001937 ORTHO05D007024 0.0e+00 1590.1 1071 72.6
SGA_v2.0_scaffold14G07136 Striga asiatica HOM05D001937 ORTHO05D007024 0.0e+00 1550.0 1126 69.4
Psat7g100640 Pisum sativum HOM05D001937 ORTHO05D007024 0.0e+00 1546.9 1093 71.1
Nitab4.5_0004091g0060 Nicotiana tabacum HOM05D001937 ORTHO05D007024 0.0e+00 1538.1 1271 62.9
Actinidia11252 Actinidia chinensis HOM05D001937 ORTHO05D007024 0.0e+00 1505.0 1272 61.9
MCO14G182 Micromonas commoda HOM05D001937 ORTHO05D007024 0.0e+00 1406.0 1323 55.9
Lalb_Chr16g0382831 Lupinus albus HOM05D001937 ORTHO05D007024 0.0e+00 1401.0 965 71.2
Pp3c19_22940 Physcomitrium patens HOM05D001937 ORTHO05D007024 0.0e+00 1388.6 1047 66.8
Cfa025426 Carpinus fangiana HOM05D001937 ORTHO05D007024 0.0e+00 1184.1 1334 49.9
Oeu029564.1 Olea europaea HOM05D001937 ORTHO05D007024 0.0e+00 1148.7 815 70.9
Cre07.g325748 Chlamydomonas reinhardtii HOM05D001937 ORTHO05D007024 0.0e+00 1147.1 1396 47.3
GSVIVG01034203001 Vitis vinifera HOM05D001937 ORTHO05D007024 0.0e+00 1136.3 1271 51.6
TAR636G0878 Trochodendron aralioides HOM05D001937 ORTHO05D007024 1.9e-298 1029.6 727 70.8
VMungo0251G0025 Vigna mungo HOM05D001937 ORTHO05D007024 1.2e-279 967.2 974 56.7
Dinv02208 Davidia involucrata HOM05D001937 ORTHO05D007024 2.7e-268 929.5 749 64.8
TAR636G1691 Trochodendron aralioides HOM05D001937 ORTHO05D007024 6.9e-248 861.7 504 83.3
PRCOL_00004137 Prasinoderma coloniale HOM05D001937 ORTHO05D007024 2.4e-224 783.5 1242 37.0
CBR_g26054 Chara braunii HOM05D000019 ORTHO05D000002 4.3e-218 762.7 685 57.5
Dinv10935 Davidia involucrata HOM05D001937 ORTHO05D007024 6.3e-209 732.3 572 65.4
MD02G1239500 Malus domestica HOM05D001937 ORTHO05D007024 1.0e-179 635.2 474 66.7
TAR636G1243 Trochodendron aralioides HOM05D001937 ORTHO05D007024 9.8e-178 628.6 391 80.6
TAR636G2433 Trochodendron aralioides HOM05D001937 ORTHO05D007024 3.5e-143 513.8 458 60.5
CBR_g26059 Chara braunii HOM05D001937 ORTHO05D007024 4.3e-125 453.8 361 64.3
Potri.017G124400 Populus trichocarpa HOM05D001937 ORTHO05D007024 1.3e-108 399.1 314 66.2
Lalb_Chr16g0382841 Lupinus albus HOM05D001937 ORTHO05D007024 1.6e-103 382.1 269 73.6
Oeu061583.3 Olea europaea HOM05D001937 ORTHO05D007024 2.5e-72 278.5 482 39.4
SalBow2G0807 Salvia bowleyana HOM05D001937 ORTHO05D007024 9.7e-69 266.5 172 75.6
SalBow1G2752 Salvia bowleyana HOM05D001937 ORTHO05D007024 3.5e-66 258.1 172 73.8
SalBow1G1280 Salvia bowleyana HOM05D001937 ORTHO05D007024 1.3e-65 256.1 172 73.3
HPP92_019823 Vanilla planifolia HOM05D001937 ORTHO05D007024 6.8e-62 243.8 138 88.4
ECA234G0635 Erigeron canadensis HOM05D001937 ORTHO05D007024 5.0e-57 227.6 245 51.8
TAR636G3286 Trochodendron aralioides HOM05D001937 ORTHO05D043971 2.3e-49 202.2 117 77.8
TAR636G2347 Trochodendron aralioides HOM05D001937 ORTHO05D007024 3.6e-39 168.3 91 86.8
HPP92_019822 Vanilla planifolia HOM05D001937 ORTHO05D007024 1.5e-37 162.9 155 59.4
ECA234G4540 Erigeron canadensis HOM05D016619 ORTHO05D007024 2.2e-36 159.1 182 53.3
CBR_g39219 Chara braunii HOM05D001937 ORTHO05D043971 1.9e-32 146.0 100 66.0
HPP92_019824 Vanilla planifolia HOM05D001937 ORTHO05D007024 4.9e-28 131.3 104 63.5


User provided reference genes

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