Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G1908 Ceratophyllum demersum HOM05D006582 ORTHO05D008313 2.0e-136 489.2 259 100.0
Prupe.2G171600 Prunus persica HOM05D006582 ORTHO05D008313 5.1e-76 288.5 301 53.5
MBI04_g35986_MAGBIO Magnolia biondii HOM05D006582 ORTHO05D008313 1.1e-75 287.3 269 57.6
MD07G1135900 Malus domestica HOM05D006582 ORTHO05D008313 1.9e-75 286.6 300 52.7
RcHm_v2.0_Chr1g0355871 Rosa chinensis HOM05D006582 ORTHO05D008313 7.4e-75 284.6 300 51.3
CiPaw.06G044200 Carya illinoinensis HOM05D006582 ORTHO05D008313 2.8e-74 282.7 302 52.0
FvH4_7g14460 Fragaria vesca HOM05D006582 ORTHO05D008313 6.2e-74 281.6 300 51.3
FAN06G2233 Fragaria x ananassa HOM05D006582 ORTHO05D008313 6.2e-74 281.6 300 51.3
CANSAT21G1996 Cannabis sativa HOM05D006582 ORTHO05D008313 1.1e-73 280.8 302 52.6
FAN03G0584 Fragaria x ananassa HOM05D006582 ORTHO05D008313 1.4e-73 280.4 300 51.0
FAN06G3963 Fragaria x ananassa HOM05D006582 ORTHO05D008313 1.4e-73 280.4 300 51.3
FAN01G0099 Fragaria x ananassa HOM05D006582 ORTHO05D008313 1.8e-73 280.0 300 51.0
Hund11634 Selenicereus undatus HOM05D006582 ORTHO05D008313 4.0e-73 278.9 271 56.5
GSVIVG01038593001 Vitis vinifera HOM05D006582 ORTHO05D008313 6.9e-73 278.1 299 50.8
Nn6g34389 Nelumbo nucifera HOM05D006582 ORTHO05D008313 2.0e-72 276.6 299 51.8
TAR374G0762 Trochodendron aralioides HOM05D006582 ORTHO05D008313 2.0e-72 276.6 298 51.7
Hma1.2p1_0415F.1_g148010 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 2.6e-72 276.2 295 51.5
Dinv29249 Davidia involucrata HOM05D006582 ORTHO05D008313 3.4e-72 275.8 295 50.8
Actinidia34241 Actinidia chinensis HOM05D006582 ORTHO05D008313 4.5e-72 275.4 295 51.2
Sopen03g022560 Solanum pennellii HOM05D006582 ORTHO05D008313 4.5e-72 275.4 295 52.2
SGA_v2.0_scaffold18G08434 Striga asiatica HOM05D006582 ORTHO05D008313 5.8e-72 275.0 295 52.9
Rhsim03G0211600 Rhododendron simsii HOM05D006582 ORTHO05D008313 7.6e-72 274.6 295 51.2
CSS0043436 Camellia sinensis var. sinensis HOM05D006582 ORTHO05D008313 1.3e-71 273.9 295 51.2
Ah.07g205040 Amaranthus hybridus HOM05D006582 ORTHO05D008313 2.9e-71 272.7 279 53.0
PGR142G1628 Punica granatum HOM05D006582 ORTHO05D008313 2.9e-71 272.7 303 50.8
CSS0003388 Camellia sinensis var. sinensis HOM05D006582 ORTHO05D008313 3.8e-71 272.3 295 50.8
Migut.F00182 Erythranthe guttata HOM05D006582 ORTHO05D008313 3.8e-71 272.3 296 51.7
CAN.G481.47 Capsicum annuum HOM05D006582 ORTHO05D008313 4.9e-71 271.9 298 51.3
Cfa016201 Carpinus fangiana HOM05D006582 ORTHO05D008313 1.1e-70 270.8 303 51.2
PGSC0003DMG402018519 Solanum tuberosum HOM05D006582 ORTHO05D008313 1.1e-70 270.8 295 51.5
SalBow4G1606 Salvia bowleyana HOM05D006582 ORTHO05D008313 1.9e-70 270.0 294 51.4
Solyc03g082820.3 Solanum lycopersicum HOM05D006582 ORTHO05D008313 1.9e-70 270.0 295 51.2
CsaV3_5G000310 Cucumis sativus L. HOM05D006582 ORTHO05D008313 5.5e-70 268.5 305 50.2
Manes.01G148600 Manihot esculenta HOM05D006582 ORTHO05D008313 1.2e-69 267.3 298 50.3
Thecc.03G203200 Theobroma cacao HOM05D006582 ORTHO05D008313 1.2e-69 267.3 272 54.0
AUR62006048 Chenopodium quinoa HOM05D006582 ORTHO05D008313 1.6e-69 266.9 269 54.3
Sed0002968 Sechium edule HOM05D006582 ORTHO05D008313 1.6e-69 266.9 306 50.3
AUR62035580 Chenopodium quinoa HOM05D006582 ORTHO05D008313 3.5e-69 265.8 271 53.9
MELO3C005901.2 Cucumis melo HOM05D006582 ORTHO05D008313 3.5e-69 265.8 305 49.8
EL10Ac3g05224 Beta vulgaris HOM05D006582 ORTHO05D008313 4.6e-69 265.4 271 53.9
Peaxi162Scf00740g00331 Petunia axillaris HOM05D006582 ORTHO05D008313 4.6e-69 265.4 296 51.4
Sc19g0000750 Simmondsia chinensis HOM05D006582 ORTHO05D008313 4.6e-69 265.4 271 52.8
Lsat_1_v5_gn_2_135281 Lactuca sativa HOM05D006582 ORTHO05D008313 6.0e-69 265.0 301 49.8
unitig_747.g21740 Utricularia gibba HOM05D006582 ORTHO05D008313 1.0e-68 264.2 293 49.8
COL.COLO4_16812 Corchorus olitorius HOM05D006582 ORTHO05D008313 2.3e-68 263.1 272 53.3
PSO782G4269 Papaver somniferum HOM05D006582 ORTHO05D008313 2.3e-68 263.1 296 50.3
Aa31LG3G9690 Aethionema arabicum HOM05D006582 ORTHO05D008313 3.0e-68 262.7 281 52.0
Aqoxy7G00041 Aquilegia oxysepala HOM05D006582 ORTHO05D008313 3.9e-68 262.3 296 49.3
Cc04_g16300 Coffea canephora HOM05D006582 ORTHO05D008313 3.9e-68 262.3 295 50.2
THA.LOC104811904 Tarenaya hassleriana HOM05D006582 ORTHO05D008313 5.1e-68 261.9 307 48.9
Lj3A900T44 Lonicera japonica HOM05D006582 ORTHO05D008313 6.7e-68 261.5 297 49.2
Haze_00249 Corylus avellana HOM05D006582 ORTHO05D008313 1.1e-67 260.8 331 47.1
Haze_00255 Corylus avellana HOM05D006582 ORTHO05D008313 1.1e-67 260.8 331 47.1
Gohir.D08G113800 Gossypium hirsutum HOM05D006582 ORTHO05D008313 1.5e-67 260.4 272 52.6
QL09p007748 Quercus lobata HOM05D006582 ORTHO05D008313 1.9e-67 260.0 308 48.4
VMungo1127G0470 Vigna mungo HOM05D006582 ORTHO05D008313 1.9e-67 260.0 300 51.0
Gorai.004G122700 Gossypium raimondii HOM05D006582 ORTHO05D008313 2.5e-67 259.6 272 52.6
Ciclev10021376m.g Citrus clementina HOM05D006582 ORTHO05D008313 4.3e-67 258.8 300 50.0
Hund21029 Selenicereus undatus HOM05D006582 ORTHO05D008313 9.6e-67 257.7 272 52.2
Duzib068G0295 Durio zibethinus HOM05D006582 ORTHO05D008313 1.3e-66 257.3 273 52.0
HanXRQChr07g0206401 Helianthus annuus HOM05D006582 ORTHO05D008313 1.3e-66 257.3 290 49.3
Sabra15G0024300 Salix brachista HOM05D006582 ORTHO05D008313 1.3e-66 257.3 283 49.1
TWI60G0746 Tripterygium wilfordii HOM05D006582 ORTHO05D008313 1.6e-66 256.9 291 50.2
Lj3g0025694 Lotus japonicus HOM05D006582 ORTHO05D008313 4.8e-66 255.4 297 50.5
Thhalv10025816m.g Eutrema salsugineum HOM05D006582 ORTHO05D008313 6.2e-66 255.0 306 48.0
Phvul.011G018800 Phaseolus vulgaris HOM05D006582 ORTHO05D008313 8.2e-66 254.6 301 49.5
Psat7g170040 Pisum sativum HOM05D006582 ORTHO05D008313 8.2e-66 254.6 305 48.9
AT4G27750 Arabidopsis thaliana HOM05D006582 ORTHO05D008313 1.1e-65 254.2 306 47.7
arahy.Tifrunner.gnm1.ann1.AV4C6H Arachis hypogaea HOM05D006582 ORTHO05D008313 1.4e-65 253.8 305 49.8
arahy.Tifrunner.gnm1.ann1.D33ADG Arachis hypogaea HOM05D006582 ORTHO05D008313 1.4e-65 253.8 305 49.8
Carub.0007s1306 Capsella rubella HOM05D006582 ORTHO05D008313 1.8e-65 253.4 306 47.4
Glyma.11G108800 Glycine max HOM05D006582 ORTHO05D008313 1.8e-65 253.4 310 48.7
C01p24110 Brassica napus HOM05D006582 ORTHO05D008313 2.4e-65 253.1 306 47.7
Medtr4g078140 Medicago truncatula HOM05D006582 ORTHO05D008313 2.4e-65 253.1 307 48.2
BcaNung01623 Brassica carinata HOM05D006582 ORTHO05D008313 3.1e-65 252.7 306 47.7
BcaC09g50542 Brassica carinata HOM05D006582 ORTHO05D008313 5.3e-65 251.9 306 47.7
Glyma.12G016600 Glycine max HOM05D006582 ORTHO05D008313 5.3e-65 251.9 302 49.7
Lalb_Chr03g0024361 Lupinus albus HOM05D006582 ORTHO05D008313 6.9e-65 251.5 304 49.3
AL7G24900 Arabidopsis lyrata HOM05D006582 ORTHO05D008313 9.0e-65 251.1 307 47.2
A01p19210 Brassica napus HOM05D006582 ORTHO05D008313 9.0e-65 251.1 306 47.7
BraA01t01863Z Brassica rapa HOM05D006582 ORTHO05D008313 9.0e-65 251.1 306 47.7
MD01G1064000 Malus domestica HOM05D006582 ORTHO05D008313 9.0e-65 251.1 316 48.1
Sp7g25720 Schrenkiella parvula HOM05D006582 ORTHO05D008313 2.0e-64 250.0 306 46.7
CARHR235480 Cardamine hirsuta HOM05D006582 ORTHO05D008313 2.6e-64 249.6 306 46.7
vmacro06405 Vaccinium macrocarpon HOM05D006582 ORTHO05D008313 4.5e-64 248.8 342 44.4
Ca_18952_v3 Cicer arietinum L. HOM05D006582 ORTHO05D008313 1.0e-63 247.7 305 47.5
TPR.G19615 Trifolium pratense HOM05D006582 ORTHO05D008313 2.2e-63 246.5 305 47.2
Os06g0129300 Oryza sativa ssp. japonica HOM05D006582 ORTHO05D008313 1.4e-62 243.8 272 51.1
ATR0933G001 Amborella trichopoda HOM05D006582 ORTHO05D008313 3.2e-62 242.7 306 47.4
BolC1t02368H Brassica oleracea HOM05D006582 ORTHO05D008313 5.5e-62 241.9 335 43.9
DCAR_008960 Daucus carota HOM05D006582 ORTHO05D008313 9.3e-62 241.1 274 48.9
SGA_v2.0_scaffold44G16825 Striga asiatica HOM05D006582 ORTHO05D008313 1.6e-61 240.4 293 47.1
ECA238G3804 Erigeron canadensis HOM05D006582 ORTHO05D008313 8.7e-60 234.6 273 48.4
Zm00001eb378450 Zea mays HOM05D006582 ORTHO05D008313 8.7e-60 234.6 272 48.9
MD01G1063600 Malus domestica HOM05D006582 ORTHO05D008313 4.1e-57 225.7 235 51.5
BcaNung01628 Brassica carinata HOM05D006582 ORTHO05D008313 3.8e-55 219.2 306 44.4
Nitab4.5_0002780g0150 Nicotiana tabacum HOM05D006582 ORTHO05D008313 1.4e-54 217.2 314 42.0
BcaNung01632 Brassica carinata HOM05D006582 ORTHO05D008313 3.9e-52 209.1 320 41.9
Nitab4.5_0007755g0010 Nicotiana tabacum HOM05D006582 ORTHO05D008313 8.2e-50 201.4 336 38.4
MD01G1064500 Malus domestica HOM05D006582 ORTHO05D008313 2.6e-48 196.4 197 53.8
HPP92_007389 Vanilla planifolia HOM05D006582 ORTHO05D008313 7.7e-48 194.9 273 44.7
Hma1.2p1_0415F.1_g148020 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 1.4e-44 184.1 220 47.3
Eucgr.K00407 Eucalyptus grandis HOM05D006582 ORTHO05D008313 1.5e-43 180.6 233 47.2
Gohir.A08G102500 Gossypium hirsutum HOM05D006582 ORTHO05D008313 1.1e-41 174.5 209 48.8
Os10g0520900 Oryza sativa ssp. japonica HOM05D006582 ORTHO05D008313 3.2e-38 162.9 262 38.9
Mapoly0081s0017 Marchantia polymorpha HOM05D006582 ORTHO05D008313 5.5e-38 162.2 313 35.5
Zm00001eb021230 Zea mays HOM05D006582 ORTHO05D008313 4.1e-33 146.0 264 37.9
SMO356G0114 Selaginella moellendorffii HOM05D001613 ORTHO05D001556 2.6e-32 143.3 274 35.0
Potri.015G029300 Populus trichocarpa HOM05D006582 ORTHO05D008313 4.5e-32 142.5 173 47.4
Pp3c14_24810 Physcomitrium patens HOM05D006582 ORTHO05D008313 5.2e-28 129.0 293 32.4
AagrBONN_evm.TU.Sc2ySwM_228.4673 Anthoceros agrestis HOM05D006582 ORTHO05D008313 1.2e-27 127.9 241 36.9
Cpa.g.sc3.116 Carica papaya HOM05D006582 ORTHO05D008313 8.5e-23 111.7 152 44.7
PGSC0003DMG401018519 Solanum tuberosum HOM05D006582 ORTHO05D008313 3.0e-20 103.2 154 43.5
Hma1.2p1_0512F.1_g169380 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 5.7e-19 99.0 261 30.3
CBR_g57838 Chara braunii HOM05D006582 ORTHO05D008313 4.1e-17 92.8 231 32.9
Hma1.2p1_0415F.1_g148000 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 1.3e-15 87.8 88 54.5
CiPaw.05G199600 Carya illinoinensis HOM05D006582 ORTHO05D008313 2.6e-11 73.6 78 47.4
SHI19113 Sapria himalayana HOM05D006582 ORTHO05D008313 9.8e-11 71.6 74 48.6
SHI19111 Sapria himalayana HOM05D006582 ORTHO05D008313 3.2e-09 66.6 93 44.1
MD07G1135700 Malus domestica HOM05D006582 ORTHO05D008313 1.3e-07 61.2 77 49.4
Rhsim03G0115100 Rhododendron simsii HOM05D006582 ORTHO05D023108 1.7e-07 60.8 60 51.7
SEGI_35321 Sequoiadendron giganteum HOM05D006582 ORTHO05D008313 1.5e-06 57.8 57 49.1


User provided reference genes

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