Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G1899 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 1.9e-184 649.0 337 100.0
CDE07G1645 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 6.4e-95 351.7 243 81.5
Nn1g07478 Nelumbo nucifera HOM05D004683 ORTHO05D005388 3.3e-51 206.5 383 42.3
TAR626G1909 Trochodendron aralioides HOM05D004683 ORTHO05D005388 2.6e-48 196.8 381 40.2
MBI19_g44082_MAGBIO Magnolia biondii HOM05D004683 ORTHO05D005388 5.5e-46 189.1 387 42.9
Dinv04407 Davidia involucrata HOM05D004683 ORTHO05D005388 1.3e-44 184.5 340 42.6
CDE04G2289 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 1.8e-44 184.1 314 41.7
Lj2A259T33 Lonicera japonica HOM05D004683 ORTHO05D005388 1.1e-43 181.4 359 42.3
CDE06G0298 Ceratophyllum demersum HOM05D000165 ORTHO05D005388 6.3e-42 175.6 268 47.0
TAR341G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 1.1e-41 174.9 267 46.1
TAR485G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 1.1e-41 174.9 267 46.1
CSS0016540 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 9.0e-41 171.8 395 39.7
CSS0018655 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 8.5e-39 165.2 331 39.3
Aqoxy4G02236 Aquilegia oxysepala HOM05D004683 ORTHO05D005388 4.2e-38 162.9 382 37.7
Actinidia39280 Actinidia chinensis HOM05D004683 ORTHO05D005388 6.1e-37 159.1 378 36.0
CSS0042800 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.4e-36 157.9 263 44.5
Duzib160G0680 Durio zibethinus HOM05D004683 ORTHO05D005388 2.3e-36 157.1 393 38.9
Cfa000066 Carpinus fangiana HOM05D004683 ORTHO05D005388 6.7e-36 155.6 330 40.6
RcHm_v2.0_Chr5g0000761 Rosa chinensis HOM05D004683 ORTHO05D005388 6.7e-36 155.6 380 37.4
GSVIVG01007216001 Vitis vinifera HOM05D004683 ORTHO05D005388 1.5e-35 154.5 304 40.5
MD10G1336700 Malus domestica HOM05D004683 ORTHO05D005388 5.7e-35 152.5 345 37.4
Prupe.4G006700 Prunus persica HOM05D004683 ORTHO05D005388 7.4e-35 152.1 343 37.9
Gohir.D10G008100 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.7e-34 151.0 329 38.9
Solyc11g012610.2 Solanum lycopersicum HOM05D004683 ORTHO05D005388 3.7e-34 149.8 356 37.6
Duzib235G0361 Durio zibethinus HOM05D004683 ORTHO05D005388 4.8e-34 149.4 283 41.3
Gorai.010G188900 Gossypium raimondii HOM05D004683 ORTHO05D005388 4.8e-34 149.4 300 39.7
Gohir.A10G008300 Gossypium hirsutum HOM05D004683 ORTHO05D005388 8.2e-34 148.7 329 38.0
Gohir.D06G161900 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.4e-33 147.9 300 39.3
Gorai.011G008800 Gossypium raimondii HOM05D004683 ORTHO05D005388 1.4e-33 147.9 329 38.6
Manes.09G081701 Manihot esculenta HOM05D004683 ORTHO05D005388 2.4e-33 147.1 391 37.3
Sc05g0009730 Simmondsia chinensis HOM05D004683 ORTHO05D005388 2.4e-33 147.1 387 36.7
THA.LOC104806735 Tarenaya hassleriana HOM05D004683 ORTHO05D005388 3.1e-33 146.7 338 38.5
FAN25G2373 Fragaria x ananassa HOM05D004683 ORTHO05D005388 4.1e-33 146.4 340 37.1
PGSC0003DMG400013358 Solanum tuberosum HOM05D004683 ORTHO05D005388 1.2e-32 144.8 357 36.7
ClCG01G010700 Citrullus lanatus HOM05D004683 ORTHO05D005388 1.5e-32 144.4 328 38.4
Actinidia11898 Actinidia chinensis HOM05D004683 ORTHO05D005388 2.6e-32 143.7 388 35.8
ATR0624G003 Amborella trichopoda HOM05D004683 ORTHO05D005388 2.6e-32 143.7 328 39.6
FvH4_3g00551 Fragaria vesca HOM05D004683 ORTHO05D005388 2.6e-32 143.7 344 36.9
Nitab4.5_0001668g0040 Nicotiana tabacum HOM05D004683 ORTHO05D005388 2.6e-32 143.7 302 38.7
PSO675G6369 Papaver somniferum HOM05D004683 ORTHO05D005388 2.6e-32 143.7 392 36.2
Oeu052851.1 Olea europaea HOM05D004683 ORTHO05D005388 3.4e-32 143.3 301 41.2
Gohir.A06G155500 Gossypium hirsutum HOM05D004683 ORTHO05D005388 4.5e-32 142.9 341 37.2
Lalb_Chr15g0088101 Lupinus albus HOM05D004683 ORTHO05D005388 4.5e-32 142.9 255 42.0
CsaV3_UNG061480 Cucumis sativus L. HOM05D004683 ORTHO05D005388 5.9e-32 142.5 381 36.5
Lj6g0001835 Lotus japonicus HOM05D004683 ORTHO05D005388 7.7e-32 142.1 328 38.1
CAN.G696.10 Capsicum annuum HOM05D004683 ORTHO05D005388 1.0e-31 141.7 359 37.0
CsaV3_1G015800 Cucumis sativus L. HOM05D004683 ORTHO05D005388 1.0e-31 141.7 328 37.5
Phvul.006G141000 Phaseolus vulgaris HOM05D004683 ORTHO05D005388 1.3e-31 141.4 340 38.5
MELO3C025532.2 Cucumis melo HOM05D004683 ORTHO05D005388 3.8e-31 139.8 381 35.7
AT4G17240 Arabidopsis thaliana HOM05D004683 ORTHO05D005388 6.5e-31 139.0 320 40.0
Lsat_1_v5_gn_7_14120 Lactuca sativa HOM05D004683 ORTHO05D005388 6.5e-31 139.0 389 36.8
PSO541G4951 Papaver somniferum HOM05D004683 ORTHO05D005388 8.5e-31 138.7 392 36.0
Potri.006G017200 Populus trichocarpa HOM05D004683 ORTHO05D005388 1.1e-30 138.3 385 36.1
Potri.016G008400 Populus trichocarpa HOM05D004683 ORTHO05D005388 1.1e-30 138.3 361 35.7
Atru.chr1.2335 Acer truncatum HOM05D004683 ORTHO05D005388 1.4e-30 137.9 266 41.0
Sed0018998 Sechium edule HOM05D004683 ORTHO05D005388 1.9e-30 137.5 269 41.6
MD00G1058000 Malus domestica HOM05D004683 ORTHO05D005388 5.5e-30 136.0 255 40.8
COL.COLO4_15259 Corchorus olitorius HOM05D004683 ORTHO05D005388 1.6e-29 134.4 320 38.4
Carub.0007s2417 Capsella rubella HOM05D004683 ORTHO05D005388 2.1e-29 134.0 320 39.1
Sabra06G0012200 Salix brachista HOM05D004683 ORTHO05D005388 2.1e-29 134.0 384 36.2
Peaxi162Scf00352g01036 Petunia axillaris HOM05D004683 ORTHO05D005388 3.6e-29 133.3 366 33.6
Nitab4.5_0004646g0030 Nicotiana tabacum HOM05D004683 ORTHO05D005388 4.7e-29 132.9 320 36.2
HanXRQChr15g0470281 Helianthus annuus HOM05D004683 ORTHO05D005388 7.9e-29 132.1 289 40.5
HPP92_014031 Vanilla planifolia HOM05D004683 ORTHO05D005388 1.4e-28 131.3 268 42.2
AL7G37470 Arabidopsis lyrata HOM05D004683 ORTHO05D005388 2.3e-28 130.6 319 39.2
PGSC0003DMG400023555 Solanum tuberosum HOM05D004683 ORTHO05D005388 2.0e-27 127.5 276 38.0
Hma1.2p1_0657F.1_g196900 Hydrangea macrophylla HOM05D004683 ORTHO05D005388 3.3e-27 126.7 389 34.7
PGR004G0928 Punica granatum HOM05D004683 ORTHO05D005388 3.3e-27 126.7 385 35.1
CiPaw.09G105900 Carya illinoinensis HOM05D004683 ORTHO05D005388 4.4e-27 126.3 344 35.8
CARHR223850 Cardamine hirsuta HOM05D004683 ORTHO05D005388 7.4e-27 125.6 312 39.1
DCAR_030854 Daucus carota HOM05D004683 ORTHO05D005388 9.7e-27 125.2 384 34.4
Hund21139 Selenicereus undatus HOM05D004683 ORTHO05D005388 1.3e-26 124.8 381 34.6
Eucgr.D01443 Eucalyptus grandis HOM05D004683 ORTHO05D005388 1.7e-26 124.4 324 34.6
SGA_v2.0_scaffold7G03714 Striga asiatica HOM05D004683 ORTHO05D005388 3.7e-26 123.2 336 36.3
SalBow8G0627 Salvia bowleyana HOM05D004683 ORTHO05D005388 4.8e-26 122.9 330 34.2
Sp7g16950 Schrenkiella parvula HOM05D004683 ORTHO05D005388 4.8e-26 122.9 316 37.3
BcaC09g50454 Brassica carinata HOM05D004683 ORTHO05D005388 8.2e-26 122.1 285 36.8
C01p25270 Brassica napus HOM05D004683 ORTHO05D005388 8.2e-26 122.1 285 36.8
BolC1t02477H Brassica oleracea HOM05D004683 ORTHO05D005388 1.1e-25 121.7 285 36.5
Sabra16G0012500 Salix brachista HOM05D004683 ORTHO05D005388 1.1e-25 121.7 274 40.1
Thhalv10025641m.g Eutrema salsugineum HOM05D004683 ORTHO05D005388 1.4e-25 121.3 356 35.1
A01p20140 Brassica napus HOM05D004683 ORTHO05D005388 1.8e-25 120.9 280 37.1
BraA01t01938Z Brassica rapa HOM05D004683 ORTHO05D005388 1.8e-25 120.9 280 37.1
HPP92_028363 Vanilla planifolia HOM05D004683 ORTHO05D005388 1.8e-25 120.9 291 38.8
Oeu052866.1 Olea europaea HOM05D004683 ORTHO05D005388 2.4e-25 120.6 323 37.2
Medtr2g026550 Medicago truncatula HOM05D004683 ORTHO05D005388 3.1e-25 120.2 377 34.5
Sabra16G0012800 Salix brachista HOM05D004683 ORTHO05D005388 9.1e-25 118.6 405 35.1
Cc09_g00590 Coffea canephora HOM05D004683 ORTHO05D005388 3.5e-24 116.7 317 34.1
Thecc.06G237400 Theobroma cacao HOM05D004683 ORTHO05D005388 4.5e-24 116.3 310 34.5
Ciclev10017876m.g Citrus clementina HOM05D004683 ORTHO05D005388 2.9e-23 113.6 308 35.1
AUR62021828 Chenopodium quinoa HOM05D004683 ORTHO05D005388 6.5e-23 112.5 322 33.5
Lsat_1_v5_gn_0_24381 Lactuca sativa HOM05D004683 ORTHO05D005388 6.5e-23 112.5 355 34.6
Ah.14g087460 Amaranthus hybridus HOM05D004683 ORTHO05D005388 1.1e-22 111.7 317 34.1
CANSAT56G4109 Cannabis sativa HOM05D004683 ORTHO05D005388 2.5e-22 110.5 392 34.7
Aa31LG6G60 Aethionema arabicum HOM05D004683 ORTHO05D005388 4.2e-22 109.8 392 30.9
TWI38G0781 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 6.1e-21 105.9 334 31.7
arahy.Tifrunner.gnm1.ann1.L4TARN Arachis hypogaea HOM05D004683 ORTHO05D005388 1.0e-20 105.1 328 33.5
BcaNung00108 Brassica carinata HOM05D004683 ORTHO05D005388 1.0e-20 105.1 195 39.5
Peaxi162Scf01544g00025 Petunia axillaris HOM05D004683 ORTHO05D005388 1.4e-20 104.8 302 34.4
Cpa.g.sc27.252 Carica papaya HOM05D004683 ORTHO05D005388 1.8e-20 104.4 265 38.1
Migut.M01430 Erythranthe guttata HOM05D004683 ORTHO05D005388 1.8e-20 104.4 332 31.0
QL05p068304 Quercus lobata HOM05D004683 ORTHO05D005388 3.0e-20 103.6 283 35.3
TPR.G10575 Trifolium pratense HOM05D004683 ORTHO05D005388 3.0e-20 103.6 358 31.6
MSTRG.7144 Avicennia marina HOM05D004683 ORTHO05D005388 4.0e-20 103.2 242 36.0
arahy.Tifrunner.gnm1.ann1.5M71YA Arachis hypogaea HOM05D004683 ORTHO05D005388 5.2e-20 102.8 329 33.7
CAN.G1263.24 Capsicum annuum HOM05D004683 ORTHO05D005388 5.2e-20 102.8 287 34.8
CSS0001859 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.6e-19 100.5 203 43.3
CSS0027604 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.6e-19 100.5 203 43.3
AUR62012829 Chenopodium quinoa HOM05D004683 ORTHO05D005388 3.3e-19 100.1 344 31.7
EL10Ac8g20240 Beta vulgaris HOM05D004683 ORTHO05D005388 5.7e-19 99.4 317 32.8
Haze_06980 Corylus avellana HOM05D004683 ORTHO05D005388 1.3e-18 98.2 338 32.2
Ah.09g234040 Amaranthus hybridus HOM05D004683 ORTHO05D005388 1.8e-17 94.4 274 33.6
TWI63G0041 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 2.4e-17 94.0 337 31.8
CSS0022133 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.1e-17 93.6 202 41.1
Oeu030103.1 Olea europaea HOM05D004683 ORTHO05D005388 3.1e-17 93.6 342 30.4
Solyc04g014850.3 Solanum lycopersicum HOM05D004683 ORTHO05D005388 4.1e-17 93.2 279 32.6
Sopen04g006980 Solanum pennellii HOM05D004683 ORTHO05D005388 2.0e-16 90.9 301 32.2
unitig_37.g12183 Utricularia gibba HOM05D004683 ORTHO05D005388 2.0e-16 90.9 164 41.5
Os03g0750900 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 5.9e-16 89.4 132 46.2
Rhsim02G0091200 Rhododendron simsii HOM05D004683 ORTHO05D005388 2.2e-15 87.4 391 30.2
Psat1g173720 Pisum sativum HOM05D004683 ORTHO05D005388 2.9e-15 87.0 379 31.1
Zm00001eb057420 Zea mays HOM05D004683 ORTHO05D005388 3.8e-15 86.7 341 29.9
Glyma.15G117000 Glycine max HOM05D004683 ORTHO05D005388 5.0e-15 86.3 389 31.4
Glyma.09G012400 Glycine max HOM05D004683 ORTHO05D005388 8.5e-15 85.5 382 29.6
Zm00001eb214850 Zea mays HOM05D004683 ORTHO05D005388 1.1e-14 85.1 268 34.0
QL05p068796 Quercus lobata HOM05D004683 ORTHO05D005388 4.2e-14 83.2 394 31.5
ECA246G4668 Erigeron canadensis HOM05D004683 ORTHO05D005388 7.2e-14 82.4 259 33.6
Sopen00g010710 Solanum pennellii HOM05D004683 ORTHO05D005388 7.2e-14 82.4 182 36.8
Ca_00746_v3 Cicer arietinum L. HOM05D004683 ORTHO05D005388 1.6e-13 81.3 292 33.2
vmacro15736 Vaccinium macrocarpon HOM05D004683 ORTHO05D005388 1.6e-13 81.3 331 31.1
Nitab4.5_0001109g0120 Nicotiana tabacum HOM05D004683 ORTHO05D005388 8.0e-13 79.0 279 31.2
SEGI_35929 Sequoiadendron giganteum HOM05D004683 ORTHO05D005388 1.0e-12 78.6 270 32.6
A09p40660 Brassica napus HOM05D004683 ORTHO05D005388 5.2e-12 76.3 68 58.8
VMungo0540G0168 Vigna mungo HOM05D004683 ORTHO05D005388 6.8e-12 75.9 340 30.6
CSS0022243 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.1e-09 68.6 200 36.5
CSS0004114 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.4e-09 68.2 200 36.5
CSS0042721 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.4e-09 68.2 200 36.5
CSS0049827 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.4e-09 68.2 200 36.5
CSS0009085 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.8e-09 67.8 200 36.5
CSS0017523 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.1e-09 66.6 200 36.0
Sabra19G0093600 Salix brachista HOM05D000057 ORTHO05D005388 8.5e-07 58.9 67 50.7
PSO339G0967 Papaver somniferum HOM05D004683 ORTHO05D005388 1.5e-06 58.2 73 49.3
Os05g0547100 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 4.2e-06 56.6 89 46.1


User provided reference genes

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