Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G1870 Ceratophyllum demersum HOM05D005972 ORTHO05D007548 7.9e-219 763.5 378 100.0
Rhsim05G0111400 Rhododendron simsii HOM05D005972 ORTHO05D007548 1.9e-140 503.1 375 64.5
PSO782G4197 Papaver somniferum HOM05D005972 ORTHO05D007548 3.3e-140 502.3 375 64.8
PSO063G2120 Papaver somniferum HOM05D005972 ORTHO05D007548 2.1e-139 499.6 375 64.8
MBI03_g03956_MAGBIO Magnolia biondii HOM05D005972 ORTHO05D007548 1.5e-137 493.4 375 65.1
Lj9A317T77 Lonicera japonica HOM05D005972 ORTHO05D007548 2.0e-137 493.0 376 61.4
Cfa019136 Carpinus fangiana HOM05D005972 ORTHO05D007548 4.4e-137 491.9 376 62.5
CiPaw.11G025800 Carya illinoinensis HOM05D005972 ORTHO05D007548 2.2e-136 489.6 376 62.8
CSS0039579 Camellia sinensis var. sinensis HOM05D005972 ORTHO05D007548 3.8e-136 488.8 379 61.5
Gohir.D06G178100 Gossypium hirsutum HOM05D005972 ORTHO05D007548 1.2e-134 483.8 378 61.1
Manes.16G061300 Manihot esculenta HOM05D005972 ORTHO05D007548 4.6e-134 481.9 379 61.5
vmacro19910 Vaccinium macrocarpon HOM05D005972 ORTHO05D007548 6.0e-134 481.5 374 62.6
Gohir.A06G170300 Gossypium hirsutum HOM05D005972 ORTHO05D007548 2.3e-133 479.6 378 60.8
Gorai.N007100 Gossypium raimondii HOM05D005972 ORTHO05D007548 3.0e-133 479.2 378 60.6
Duzib106G0263 Durio zibethinus HOM05D005972 ORTHO05D007548 6.6e-133 478.0 375 61.6
Eucgr.H00021 Eucalyptus grandis HOM05D005972 ORTHO05D007548 6.6e-133 478.0 380 60.3
Thecc.10G118600 Theobroma cacao HOM05D005972 ORTHO05D007548 8.6e-133 477.6 378 60.1
MD13G1062400 Malus domestica HOM05D005972 ORTHO05D007548 4.3e-132 475.3 376 61.7
Nitab4.5_0000718g0290 Nicotiana tabacum HOM05D005972 ORTHO05D007548 2.1e-131 473.0 376 59.0
COL.COLO4_27930 Corchorus olitorius HOM05D005972 ORTHO05D007548 3.6e-131 472.2 380 60.5
Cpa.g.sc36.20 Carica papaya HOM05D005972 ORTHO05D007548 6.2e-131 471.5 376 60.4
Prupe.1G287600 Prunus persica HOM05D005972 ORTHO05D007548 2.4e-130 469.5 375 60.5
Aqoxy4G02449 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 3.1e-130 469.2 406 58.6
PGR142G0064 Punica granatum HOM05D005972 ORTHO05D007548 3.1e-130 469.2 379 60.4
Thecc.04G023500 Theobroma cacao HOM05D005972 ORTHO05D007548 6.9e-130 468.0 378 59.3
Haze_07503 Corylus avellana HOM05D005972 ORTHO05D007548 8.9e-130 467.6 376 60.9
Dinv24228 Davidia involucrata HOM05D001691 ORTHO05D007548 1.5e-129 466.8 361 63.2
Nitab4.5_0012898g0010 Nicotiana tabacum HOM05D005972 ORTHO05D007548 3.4e-129 465.7 376 58.5
CAN.G1513.3 Capsicum annuum HOM05D005972 ORTHO05D007548 4.4e-129 465.3 379 59.1
Atru.chr12.548 Acer truncatum HOM05D005972 ORTHO05D007548 1.7e-128 463.4 375 59.5
GSVIVG01020853001 Vitis vinifera HOM05D005972 ORTHO05D007548 2.2e-128 463.0 377 59.2
Actinidia28072 Actinidia chinensis HOM05D005972 ORTHO05D007548 2.9e-128 462.6 375 59.5
QL04p050517 Quercus lobata HOM05D005972 ORTHO05D007548 2.9e-128 462.6 429 54.3
Solyc11g007070.2 Solanum lycopersicum HOM05D005972 ORTHO05D007548 3.8e-128 462.2 376 58.2
Lsat_1_v5_gn_7_80540 Lactuca sativa HOM05D005972 ORTHO05D007548 6.4e-128 461.5 378 60.1
Oeu017286.1 Olea europaea HOM05D005972 ORTHO05D007548 6.4e-128 461.5 376 59.3
ClCG05G021510 Citrullus lanatus HOM05D005972 ORTHO05D007548 1.1e-127 460.7 382 59.4
Sopen11g002990 Solanum pennellii HOM05D005972 ORTHO05D007548 1.4e-127 460.3 376 58.0
Ciclev10031864m.g Citrus clementina HOM05D005972 ORTHO05D007548 1.9e-127 459.9 376 59.3
RcHm_v2.0_Chr4g0438261 Rosa chinensis HOM05D005972 ORTHO05D007548 3.2e-127 459.1 375 59.2
HanXRQChr11g0337671 Helianthus annuus HOM05D005972 ORTHO05D007548 1.0e-125 454.1 379 58.0
Nn6g35524 Nelumbo nucifera HOM05D005972 ORTHO05D007548 1.0e-125 454.1 376 60.9
TWI73G1071 Tripterygium wilfordii HOM05D005972 ORTHO05D007548 1.0e-125 454.1 379 58.8
ATR0594G009 Amborella trichopoda HOM05D005972 ORTHO05D007548 1.7e-125 453.4 374 57.5
HPP92_021056 Vanilla planifolia HOM05D005972 ORTHO05D007548 2.3e-125 453.0 368 59.0
CsaV3_5G035730 Cucumis sativus L. HOM05D005972 ORTHO05D007548 3.0e-125 452.6 381 57.7
MELO3C012375.2 Cucumis melo HOM05D005972 ORTHO05D007548 5.1e-125 451.8 381 57.0
FAN12G3642 Fragaria x ananassa HOM05D005972 ORTHO05D007548 1.1e-124 450.7 375 57.6
THA.LOC104808523 Tarenaya hassleriana HOM05D005972 ORTHO05D007548 3.3e-124 449.1 376 57.4
FvH4_4g29980 Fragaria vesca HOM05D005972 ORTHO05D007548 5.6e-124 448.4 375 57.3
Sed0010539 Sechium edule HOM05D005972 ORTHO05D007548 9.6e-124 447.6 381 56.2
Potri.001G222400 Populus trichocarpa HOM05D005972 ORTHO05D007548 4.8e-123 445.3 376 58.5
FAN07G1127 Fragaria x ananassa HOM05D005972 ORTHO05D007548 1.1e-122 444.1 375 56.8
FAN22G0246 Fragaria x ananassa HOM05D005972 ORTHO05D007548 1.1e-122 444.1 375 56.8
Ca_18332_v3 Cicer arietinum L. HOM05D005972 ORTHO05D007548 2.4e-122 443.0 376 57.4
Sc22g0000350 Simmondsia chinensis HOM05D005972 ORTHO05D007548 6.9e-122 441.4 380 55.8
EL10Ac5g12767 Beta vulgaris HOM05D005972 ORTHO05D007548 4.5e-121 438.7 378 55.8
Migut.N01012 Erythranthe guttata HOM05D005972 ORTHO05D007548 4.5e-121 438.7 381 58.3
Psat0s2194g0120 Pisum sativum HOM05D005972 ORTHO05D007548 4.5e-121 438.7 375 57.1
MSTRG.27825 Avicennia marina HOM05D005972 ORTHO05D007548 1.3e-120 437.2 379 57.5
arahy.Tifrunner.gnm1.ann1.41EE5L Arachis hypogaea HOM05D005972 ORTHO05D007548 2.2e-120 436.4 378 56.1
Glyma.08G075400 Glycine max HOM05D005972 ORTHO05D007548 2.2e-120 436.4 375 57.1
Lj4g0025997 Lotus japonicus HOM05D005972 ORTHO05D007548 2.2e-120 436.4 375 55.5
ATR0174G007 Amborella trichopoda HOM05D005972 ORTHO05D007548 4.9e-120 435.3 385 56.1
Lalb_Chr12g0208521 Lupinus albus HOM05D005972 ORTHO05D007548 8.4e-120 434.5 375 57.3
Medtr4g094305 Medicago truncatula HOM05D005972 ORTHO05D007548 1.4e-119 433.7 374 57.0
Glyma.05G120600 Glycine max HOM05D005972 ORTHO05D007548 1.9e-119 433.3 375 57.1
FAN17G2742 Fragaria x ananassa HOM05D005972 ORTHO05D007548 7.1e-119 431.4 385 55.3
arahy.Tifrunner.gnm1.ann1.UKM804 Arachis hypogaea HOM05D005972 ORTHO05D007548 1.2e-118 430.6 378 55.3
CANSAT80G0182 Cannabis sativa HOM05D005972 ORTHO05D007548 1.2e-118 430.6 376 56.9
TPR.G31487 Trifolium pratense HOM05D005972 ORTHO05D007548 3.5e-118 429.1 375 55.7
Ah.12g057320 Amaranthus hybridus HOM05D005972 ORTHO05D007548 1.3e-117 427.2 378 54.8
Thhalv10025456m.g Eutrema salsugineum HOM05D005972 ORTHO05D007548 7.4e-116 421.4 382 53.7
BcaNung00313 Brassica carinata HOM05D005972 ORTHO05D007548 1.3e-115 420.6 377 54.4
Aa31LG9G2330 Aethionema arabicum HOM05D005972 ORTHO05D007548 1.6e-115 420.2 378 55.0
A01p22560 Brassica napus HOM05D005972 ORTHO05D007548 1.6e-115 420.2 377 54.9
SGA_v2.0_scaffold145G36053 Striga asiatica HOM05D005972 ORTHO05D007548 1.6e-115 420.2 379 54.1
SEGI_29488 Sequoiadendron giganteum HOM05D005972 ORTHO05D007548 2.8e-115 419.5 376 53.2
BraA01t02169Z Brassica rapa HOM05D005972 ORTHO05D007548 6.2e-115 418.3 377 54.4
MD16G1060700 Malus domestica HOM05D005972 ORTHO05D007548 6.2e-115 418.3 365 57.5
AL7G40820 Arabidopsis lyrata HOM05D005972 ORTHO05D007548 8.1e-115 417.9 376 54.3
BcaB02g07844 Brassica carinata HOM05D005972 ORTHO05D007548 1.4e-114 417.2 379 54.6
BcaC09g50180 Brassica carinata HOM05D005972 ORTHO05D007548 3.1e-114 416.0 377 54.4
BolC1t02740H Brassica oleracea HOM05D005972 ORTHO05D007548 3.1e-114 416.0 377 54.4
AT4G15010 Arabidopsis thaliana HOM05D005972 ORTHO05D007548 4.0e-114 415.6 376 54.5
C01p28060 Brassica napus HOM05D005972 ORTHO05D007548 5.3e-114 415.2 377 54.4
Carub.0007s2708 Capsella rubella HOM05D005972 ORTHO05D007548 2.6e-113 412.9 376 54.0
CARHR221700 Cardamine hirsuta HOM05D005972 ORTHO05D007548 9.9e-113 411.0 379 53.0
Peaxi162Scf00152g01221 Petunia axillaris HOM05D005972 ORTHO05D007548 5.1e-109 398.7 375 52.8
VMungo0251G2526 Vigna mungo HOM05D005972 ORTHO05D007548 3.1e-106 389.4 398 50.3
DCAR_006139 Daucus carota HOM05D005972 ORTHO05D007548 4.0e-106 389.0 316 60.1
Zm00001eb427070 Zea mays HOM05D005972 ORTHO05D007548 1.2e-105 387.5 371 53.1
Phvul.002G206200 Phaseolus vulgaris HOM05D005972 ORTHO05D007548 5.8e-105 385.2 375 52.5
SalBow6G6672 Salvia bowleyana HOM05D005972 ORTHO05D007548 2.5e-103 379.8 427 46.8
ECA236G4176 Erigeron canadensis HOM05D005972 ORTHO05D007548 7.2e-87 325.1 266 58.6
Mapoly0188s0014 Marchantia polymorpha HOM05D005972 ORTHO05D007548 2.1e-86 323.6 371 43.9
Sabra16G0132100 Salix brachista HOM05D005972 ORTHO05D007548 3.4e-81 306.2 269 54.3
Pp3c15_20500 Physcomitrium patens HOM05D005972 ORTHO05D007548 1.5e-76 290.8 377 40.6
unitig_747.g21237 Utricularia gibba HOM05D005972 ORTHO05D007548 2.6e-76 290.0 407 41.0
Cc02_g21900 Coffea canephora HOM05D005972 ORTHO05D007548 8.0e-70 268.5 188 67.6
SHI11404 Sapria himalayana HOM05D005972 ORTHO05D007548 4.0e-69 266.2 280 48.9
COL.COLO4_10011 Corchorus olitorius HOM05D005972 ORTHO05D007548 2.7e-65 253.4 264 50.8
Os04g0527500 Oryza sativa ssp. japonica HOM05D005972 ORTHO05D007548 1.0e-40 171.8 124 66.9
Aqoxy3G01225 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 3.0e-40 170.2 167 51.5
C06p16620 Brassica napus HOM05D005972 ORTHO05D007548 1.9e-39 167.5 220 44.1
BolC6t36864H Brassica oleracea HOM05D005972 ORTHO05D007548 1.9e-39 167.5 220 44.1
Cc02_g21910 Coffea canephora HOM05D005972 ORTHO05D007548 1.6e-38 164.5 135 57.8
A05p16900 Brassica napus HOM05D005972 ORTHO05D007548 1.3e-35 154.8 139 56.1
Sp7g13170 Schrenkiella parvula HOM05D005972 ORTHO05D007548 1.1e-34 151.8 163 47.9
BcaC08g44257 Brassica carinata HOM05D005972 ORTHO05D024007 1.9e-34 151.0 115 58.3
SpUn0490_0010 Schrenkiella parvula HOM05D005972 ORTHO05D007548 1.6e-33 147.9 121 58.7
HanXRQChr15g0481161 Helianthus annuus HOM05D005972 ORTHO05D007548 9.9e-28 128.6 116 55.2
CAN.G730.4 Capsicum annuum HOM05D005972 ORTHO05D007548 3.6e-22 110.2 111 53.2
BraA05t20595Z Brassica rapa HOM05D005972 ORTHO05D007548 1.4e-21 108.2 370 26.2
CBR_g51824 Chara braunii HOM05D005972 ORTHO05D007548 5.2e-21 106.3 349 27.8
CAN.G730.17 Capsicum annuum HOM05D005972 ORTHO05D007548 2.9e-19 100.5 108 50.9
Zm00001eb076720 Zea mays HOM05D005972 ORTHO05D007548 1.6e-14 84.7 107 46.7
CDE08G1644 Ceratophyllum demersum HOM05D005972 ORTHO05D007548 6.2e-14 82.8 43 95.3
CSS0032497 Camellia sinensis var. sinensis HOM05D001087 ORTHO05D007548 2.0e-12 77.8 82 46.3
CAN.G730.12 Capsicum annuum HOM05D005972 ORTHO05D007548 5.8e-12 76.3 49 71.4
CAN.G730.21 Capsicum annuum HOM05D005972 ORTHO05D007548 3.8e-11 73.6 52 67.3
A05p16910 Brassica napus HOM05D005972 ORTHO05D007548 4.6e-09 66.6 58 51.7
Manes.01G140400 Manihot esculenta HOM05D001367 ORTHO05D005289 3.9e-08 63.5 311 23.5
SGA_v2.0_scaffold51G18797 Striga asiatica HOM05D001367 ORTHO05D005289 3.9e-08 63.5 310 22.3
COL.COLO4_29892 Corchorus olitorius HOM05D005972 ORTHO05D007548 2.5e-07 60.8 53 56.6
DCAR_025976 Daucus carota HOM05D001367 ORTHO05D005289 5.6e-07 59.7 254 23.2
COL.COLO4_10012 Corchorus olitorius HOM05D005972 ORTHO05D007548 1.3e-06 58.5 74 41.9
Lsat_1_v5_gn_2_78080 Lactuca sativa HOM05D001367 ORTHO05D005289 1.3e-06 58.5 248 25.0
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 1.6e-06 58.2 43 60.5
arahy.Tifrunner.gnm1.ann1.9A5XZY Arachis hypogaea HOM05D005972 ORTHO05D031493 2.8e-06 57.4 82 41.5
arahy.Tifrunner.gnm1.ann1.YJH68W Arachis hypogaea HOM05D005972 ORTHO05D083016 3.6e-06 57.0 69 40.6
Migut.H02507 Erythranthe guttata HOM05D001367 ORTHO05D005289 6.2e-06 56.2 296 21.6
Actinidia19221 Actinidia chinensis HOM05D001367 ORTHO05D005289 8.1e-06 55.8 296 24.7


User provided reference genes

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