Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G1868 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 7.2e-162 573.9 306 100.0
CDE02G2386 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 2.0e-148 529.3 303 93.1
MBI09_g14140_MAGBIO Magnolia biondii HOM05D005160 ORTHO05D006127 2.1e-113 412.9 306 70.6
Aqoxy5G01804 Aquilegia oxysepala HOM05D005160 ORTHO05D006127 3.1e-112 409.1 306 72.9
QL11p049938 Quercus lobata HOM05D005160 ORTHO05D006127 2.6e-111 406.0 298 74.2
Ciclev10028126m.g Citrus clementina HOM05D005160 ORTHO05D006127 4.4e-111 405.2 300 73.3
TAR381G1224 Trochodendron aralioides HOM05D005160 ORTHO05D006127 5.8e-111 404.8 309 73.1
Ca_19053_v3 Cicer arietinum L. HOM05D005160 ORTHO05D006127 7.5e-111 404.4 304 71.1
PSO170G2472 Papaver somniferum HOM05D005160 ORTHO05D006127 1.3e-110 403.7 299 72.9
Hma1.2p1_0163F.1_g072320 Hydrangea macrophylla HOM05D005160 ORTHO05D006127 3.7e-110 402.1 307 71.7
Prupe.8G163700 Prunus persica HOM05D005160 ORTHO05D006127 4.9e-110 401.7 301 71.1
CiPaw.05G080400 Carya illinoinensis HOM05D005160 ORTHO05D006127 8.3e-110 401.0 308 71.8
Gohir.A01G166700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 1.4e-109 400.2 304 70.4
CARHR294360 Cardamine hirsuta HOM05D005160 ORTHO05D006127 4.1e-109 398.7 299 72.2
Medtr4g073620 Medicago truncatula HOM05D005160 ORTHO05D006127 4.1e-109 398.7 304 71.1
PSO700G0063 Papaver somniferum HOM05D005160 ORTHO05D006127 4.1e-109 398.7 299 71.9
Thecc.02G062800 Theobroma cacao HOM05D005160 ORTHO05D006127 4.1e-109 398.7 308 69.2
Nn5g30735 Nelumbo nucifera HOM05D005160 ORTHO05D006127 7.0e-109 397.9 310 70.6
Duzib052G1050 Durio zibethinus HOM05D005160 ORTHO05D006127 1.2e-108 397.1 304 69.7
Duzib132G0556 Durio zibethinus HOM05D005160 ORTHO05D006127 1.2e-108 397.1 304 69.4
Cc02_g16320 Coffea canephora HOM05D005160 ORTHO05D006127 1.6e-108 396.7 307 69.1
Psat7g175760 Pisum sativum HOM05D005160 ORTHO05D006127 1.6e-108 396.7 304 70.7
A08p24110 Brassica napus HOM05D005160 ORTHO05D006127 3.5e-108 395.6 299 69.6
Gohir.D01G157700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 4.6e-108 395.2 304 69.1
Sp7g37140 Schrenkiella parvula HOM05D005160 ORTHO05D006127 7.8e-108 394.4 298 71.1
GSVIVG01024045001 Vitis vinifera HOM05D005160 ORTHO05D006127 7.8e-108 394.4 305 70.5
Sed0006607 Sechium edule HOM05D005160 ORTHO05D006127 1.3e-107 393.7 299 70.9
ClCG02G011810 Citrullus lanatus HOM05D005160 ORTHO05D006127 1.7e-107 393.3 301 70.1
SalBow1G7891 Salvia bowleyana HOM05D005160 ORTHO05D006127 1.7e-107 393.3 312 71.2
Nitab4.5_0001891g0030 Nicotiana tabacum HOM05D005160 ORTHO05D006127 2.3e-107 392.9 296 71.3
Thecc.02G062500 Theobroma cacao HOM05D005160 ORTHO05D006127 3.0e-107 392.5 304 69.1
Thhalv10024826m.g Eutrema salsugineum HOM05D005160 ORTHO05D006127 3.9e-107 392.1 300 70.7
Gorai.002G195800 Gossypium raimondii HOM05D005160 ORTHO05D006127 3.9e-107 392.1 304 68.8
RcHm_v2.0_Chr6g0244091 Rosa chinensis HOM05D005160 ORTHO05D006127 3.9e-107 392.1 305 70.5
MSTRG.16896 Avicennia marina HOM05D005160 ORTHO05D006127 5.1e-107 391.7 306 69.9
MELO3C020808.2 Cucumis melo HOM05D005160 ORTHO05D006127 8.6e-107 391.0 309 69.3
BcaC01g00246 Brassica carinata HOM05D005160 ORTHO05D006127 1.1e-106 390.6 300 69.3
C03p77200 Brassica napus HOM05D005160 ORTHO05D006127 1.1e-106 390.6 300 69.3
Carub.0007s0051 Capsella rubella HOM05D005160 ORTHO05D006127 1.1e-106 390.6 299 70.2
Atru.chr5.3293 Acer truncatum HOM05D005160 ORTHO05D006127 1.5e-106 390.2 302 68.9
Cfa005223 Carpinus fangiana HOM05D005160 ORTHO05D006127 1.5e-106 390.2 304 69.4
BcaB03g12216 Brassica carinata HOM05D005160 ORTHO05D006127 1.9e-106 389.8 300 70.0
Haze_02160 Corylus avellana HOM05D005160 ORTHO05D006127 1.9e-106 389.8 304 68.8
AT4G38640 Arabidopsis thaliana HOM05D005160 ORTHO05D006127 2.5e-106 389.4 300 69.7
BolC3t19975H Brassica oleracea HOM05D005160 ORTHO05D006127 2.5e-106 389.4 300 69.0
Peaxi162Scf00362g00839 Petunia axillaris HOM05D005160 ORTHO05D006127 2.5e-106 389.4 296 70.9
THA.LOC104824770 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 2.5e-106 389.4 295 68.8
Aa31LG6G16530 Aethionema arabicum HOM05D005160 ORTHO05D006127 3.3e-106 389.0 299 69.9
TWI31G1222 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 3.3e-106 389.0 304 69.7
Lalb_Chr03g0025091 Lupinus albus HOM05D005160 ORTHO05D006127 4.3e-106 388.7 308 68.5
AL7G10530 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 7.3e-106 387.9 299 69.9
MD10G1123200 Malus domestica HOM05D005160 ORTHO05D006127 7.3e-106 387.9 305 67.5
Rhsim11G0191300 Rhododendron simsii HOM05D005160 ORTHO05D006127 9.5e-106 387.5 304 69.4
CsaV3_2G015970 Cucumis sativus L. HOM05D005160 ORTHO05D006127 1.2e-105 387.1 309 68.6
Nitab4.5_0005837g0020 Nicotiana tabacum HOM05D005160 ORTHO05D006127 1.2e-105 387.1 296 70.3
Potri.009G132900 Populus trichocarpa HOM05D005160 ORTHO05D006127 1.2e-105 387.1 297 68.7
FvH4_2g01450 Fragaria vesca HOM05D005160 ORTHO05D006127 1.6e-105 386.7 306 69.3
FAN24G2272 Fragaria x ananassa HOM05D005160 ORTHO05D006127 1.6e-105 386.7 306 69.3
FAN15G3563 Fragaria x ananassa HOM05D005160 ORTHO05D006127 2.1e-105 386.3 306 69.3
FAN27G2227 Fragaria x ananassa HOM05D005160 ORTHO05D006127 2.1e-105 386.3 306 69.3
FAN20G0465 Fragaria x ananassa HOM05D005160 ORTHO05D006127 3.6e-105 385.6 306 69.3
Migut.B00095 Erythranthe guttata HOM05D005160 ORTHO05D006127 4.7e-105 385.2 307 69.1
THA.LOC104804092 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 4.7e-105 385.2 302 67.5
Eucgr.I01400 Eucalyptus grandis HOM05D005160 ORTHO05D006127 2.3e-104 382.9 308 66.9
Sc08g0003030 Simmondsia chinensis HOM05D005160 ORTHO05D006127 5.2e-104 381.7 297 69.7
CSS0048155 Camellia sinensis var. sinensis HOM05D005160 ORTHO05D006127 6.8e-104 381.3 305 68.9
Lj3g0012456 Lotus japonicus HOM05D005160 ORTHO05D006127 8.9e-104 380.9 301 68.1
EL10Ac9g21400 Beta vulgaris HOM05D005160 ORTHO05D006127 1.2e-103 380.6 297 68.0
ATR0579G151 Amborella trichopoda HOM05D005160 ORTHO05D006127 2.0e-103 379.8 298 68.8
Phvul.011G034500 Phaseolus vulgaris HOM05D005160 ORTHO05D006127 2.0e-103 379.8 304 68.4
Oeu014453.1 Olea europaea HOM05D005160 ORTHO05D006127 3.4e-103 379.0 297 69.7
CAN.G588.54 Capsicum annuum HOM05D005160 ORTHO05D006127 4.4e-103 378.6 296 69.3
Lsat_1_v5_gn_3_46280 Lactuca sativa HOM05D005160 ORTHO05D006127 4.4e-103 378.6 304 67.4
COL.COLO4_17310 Corchorus olitorius HOM05D005160 ORTHO05D006127 7.5e-103 377.9 285 70.2
AUR62010059 Chenopodium quinoa HOM05D005160 ORTHO05D006127 9.9e-103 377.5 294 68.0
VMungo1127G1693 Vigna mungo HOM05D005160 ORTHO05D006127 9.9e-103 377.5 304 68.1
Glyma.11G106500 Glycine max HOM05D005160 ORTHO05D006127 1.3e-102 377.1 304 67.4
PGSC0003DMG402006199 Solanum tuberosum HOM05D005160 ORTHO05D006127 1.3e-102 377.1 296 68.2
Solyc01g111370.3 Solanum lycopersicum HOM05D005160 ORTHO05D006127 3.7e-102 375.6 296 68.2
SGA_v2.0_scaffold58G20392 Striga asiatica HOM05D005160 ORTHO05D006127 4.9e-102 375.2 309 66.7
Manes.04G073300 Manihot esculenta HOM05D005160 ORTHO05D006127 8.3e-102 374.4 308 67.2
AUR62013051 Chenopodium quinoa HOM05D005160 ORTHO05D006127 1.1e-101 374.0 295 66.4
Hund06424 Selenicereus undatus HOM05D005160 ORTHO05D006127 1.1e-101 374.0 297 67.0
Sopen01g053440 Solanum pennellii HOM05D005160 ORTHO05D006127 1.1e-101 374.0 296 67.9
CiPaw.06G123200 Carya illinoinensis HOM05D005160 ORTHO05D006127 1.9e-101 373.2 277 72.9
Glyma.12G031600 Glycine max HOM05D005160 ORTHO05D006127 1.9e-101 373.2 304 66.1
vmacro02269 Vaccinium macrocarpon HOM05D005160 ORTHO05D006127 3.2e-101 372.5 324 65.1
Potri.004G173600 Populus trichocarpa HOM05D005160 ORTHO05D006127 4.1e-101 372.1 297 66.3
SGA_v2.0_scaffold32G13272 Striga asiatica HOM05D005160 ORTHO05D006127 2.7e-100 369.4 304 65.5
Dinv41951 Davidia involucrata HOM05D005160 ORTHO05D006127 3.0e-99 365.9 302 67.9
TWI75G0220 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 1.9e-98 363.2 299 66.2
Sabra09G0103200 Salix brachista HOM05D005160 ORTHO05D006127 3.3e-98 362.5 298 67.1
HanXRQChr17g0543921 Helianthus annuus HOM05D005160 ORTHO05D006127 7.3e-98 361.3 305 63.6
Actinidia20505 Actinidia chinensis HOM05D005160 ORTHO05D006127 1.6e-97 360.1 277 72.6
Sabra04G0115600 Salix brachista HOM05D005160 ORTHO05D006127 1.8e-96 356.7 289 65.7
MD05G1119500 Malus domestica HOM05D005160 ORTHO05D006127 8.9e-96 354.4 305 64.9
DCAR_003159 Daucus carota HOM05D005160 ORTHO05D006127 5.8e-95 351.7 308 64.3
ECA246G0167 Erigeron canadensis HOM05D005160 ORTHO05D006127 4.6e-92 342.0 276 68.1
Ah.01g022840 Amaranthus hybridus HOM05D005160 ORTHO05D006127 2.5e-90 336.3 295 62.7
SEGI_02117 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 9.9e-87 324.3 303 57.8
TPR.G39261 Trifolium pratense HOM05D005160 ORTHO05D006127 5.4e-77 292.0 222 69.8
Lalb_Chr01g0001791 Lupinus albus HOM05D005160 ORTHO05D006127 6.4e-70 268.5 257 60.7
SMO012G0038 Selaginella moellendorffii HOM05D005160 ORTHO05D006127 4.6e-68 262.3 310 44.5
Lj5A181T55 Lonicera japonica HOM05D005160 ORTHO05D006127 3.7e-65 252.7 307 51.8
unitig_0.g42 Utricularia gibba HOM05D005160 ORTHO05D000138 9.0e-64 248.1 244 58.2
AL7G44960 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 4.5e-63 245.7 314 51.9
Mapoly0029s0105 Marchantia polymorpha HOM05D005160 ORTHO05D006127 2.3e-59 233.4 302 43.4
Pp3c15_6240 Physcomitrium patens HOM05D005160 ORTHO05D006127 4.3e-58 229.2 315 41.6
Lj9A392T37 Lonicera japonica HOM05D005160 ORTHO05D006127 8.2e-57 224.9 179 70.9
AagrBONN_evm.TU.Sc2ySwM_344.1211 Anthoceros agrestis HOM05D005160 ORTHO05D006127 8.5e-54 214.9 334 38.0
Actinidia00615 Actinidia chinensis HOM05D005160 ORTHO05D006127 1.2e-52 211.1 264 53.0
Oeu006646.1 Olea europaea HOM05D005160 ORTHO05D006127 4.5e-47 192.6 152 64.5
SEGI_18476 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 2.2e-46 190.3 185 56.8
Manes.11G095300 Manihot esculenta HOM05D005160 ORTHO05D006127 7.2e-45 185.3 139 67.6
Cpa.g.sc37.160 Carica papaya HOM05D005160 ORTHO05D006127 7.0e-40 168.7 179 57.0
Pp3c24_1990 Physcomitrium patens HOM05D005160 ORTHO05D006127 8.8e-35 151.8 301 33.6
HPP92_025488 Vanilla planifolia HOM05D005160 ORTHO05D006127 6.3e-33 145.6 125 68.8
Cpa.g.sc37.161 Carica papaya HOM05D005160 ORTHO05D006127 2.4e-32 143.7 105 66.7
BraA08t34366Z Brassica rapa HOM05D005160 ORTHO05D006127 4.1e-32 142.9 103 65.0
arahy.Tifrunner.gnm1.ann1.IE9R9X Arachis hypogaea HOM05D005160 ORTHO05D006127 1.2e-31 141.4 105 63.8
Manes.05G150701 Manihot esculenta HOM05D005160 ORTHO05D006127 1.6e-31 141.0 105 65.7
arahy.Tifrunner.gnm1.ann1.JXV2U6 Arachis hypogaea HOM05D005160 ORTHO05D006127 2.0e-31 140.6 105 63.8
CBR_g32587 Chara braunii HOM05D005160 ORTHO05D006127 3.5e-31 139.8 316 27.8
Lj9A392T36 Lonicera japonica HOM05D005160 ORTHO05D006127 3.5e-31 139.8 108 65.7
Manes.07G080900 Manihot esculenta HOM05D005160 ORTHO05D006127 1.0e-30 138.3 105 63.8
CANSAT54G2532 Cannabis sativa HOM05D005160 ORTHO05D006127 5.5e-29 132.5 105 61.0
MCO01G409 Micromonas commoda HOM05D005160 ORTHO05D006127 1.0e-27 128.3 303 28.7
TPR.G40783 Trifolium pratense HOM05D005160 ORTHO05D006127 9.1e-24 115.2 80 75.0
Cre09.g390467 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 1.2e-23 114.8 274 30.7
AagrBONN_evm.TU.Sc2ySwM_228.1713 Anthoceros agrestis HOM05D022446 ORTHO05D006127 2.0e-23 114.0 264 29.5
Migut.N03290 Erythranthe guttata HOM05D005160 ORTHO05D006127 5.9e-23 112.5 92 68.5
Migut.B00916 Erythranthe guttata HOM05D005160 ORTHO05D006127 1.8e-19 100.9 75 72.0
MCO08G169 Micromonas commoda HOM05D005160 ORTHO05D006127 1.1e-16 91.7 308 24.4
Cre14.g617800 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 1.4e-16 91.3 268 26.1
PRCOL_00003313 Prasinoderma coloniale HOM05D005160 ORTHO05D006127 1.6e-15 87.8 253 27.3
AagrBONN_evm.TU.Sc2ySwM_228.1711 Anthoceros agrestis HOM05D000883 ORTHO05D002942 4.1e-08 63.2 228 30.3
VMungo1215G1708 Vigna mungo HOM05D005032 ORTHO05D006268 1.2e-07 61.6 219 25.6
arahy.Tifrunner.gnm1.ann1.HVU79Z Arachis hypogaea HOM05D005032 ORTHO05D006268 1.6e-07 61.2 219 26.0
Phvul.003G028700 Phaseolus vulgaris HOM05D005032 ORTHO05D006268 3.5e-07 60.1 219 24.7
arahy.Tifrunner.gnm1.ann1.P6ZXGF Arachis hypogaea HOM05D005032 ORTHO05D006268 4.6e-07 59.7 219 25.6
Ca_19113_v3 Cicer arietinum L. HOM05D005032 ORTHO05D006268 7.8e-07 58.9 219 25.1
Hund25090 Selenicereus undatus HOM05D005032 ORTHO05D006268 7.8e-07 58.9 189 28.0
AL1G39800 Arabidopsis lyrata HOM05D005032 ORTHO05D006268 1.3e-06 58.2 241 24.9
CBR_g546 Chara braunii HOM05D005032 ORTHO05D006268 1.3e-06 58.2 125 24.0
Oeu041892.2 Olea europaea HOM05D005032 ORTHO05D006268 1.3e-06 58.2 219 24.7
Cre06.g278550 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 2.3e-06 57.4 291 23.4
Psat6g229600 Pisum sativum HOM05D005032 ORTHO05D006268 2.3e-06 57.4 189 26.5
EL10Ac6g14461 Beta vulgaris HOM05D005032 ORTHO05D006268 2.9e-06 57.0 224 25.0
MD16G1046200 Malus domestica HOM05D005032 ORTHO05D006268 2.9e-06 57.0 188 27.1
MD13G1044800 Malus domestica HOM05D005032 ORTHO05D006268 3.9e-06 56.6 188 27.1
TWI79G0027 Tripterygium wilfordii HOM05D005032 ORTHO05D006268 3.9e-06 56.6 184 27.2
Zm00001eb245170 Zea mays HOM05D005032 ORTHO05D006268 3.9e-06 56.6 189 27.0
CBR_g30194 Chara braunii HOM05D005032 ORTHO05D006268 5.0e-06 56.2 220 27.3
AUR62002904 Chenopodium quinoa HOM05D005032 ORTHO05D006268 5.0e-06 56.2 234 24.8
AUR62035263 Chenopodium quinoa HOM05D005032 ORTHO05D006268 5.0e-06 56.2 234 24.8
Aqoxy3G03931 Aquilegia oxysepala HOM05D005032 ORTHO05D006268 6.6e-06 55.8 187 28.3
Carub.0001s2498 Capsella rubella HOM05D005032 ORTHO05D006268 6.6e-06 55.8 238 24.4
CARHR025960 Cardamine hirsuta HOM05D005032 ORTHO05D006268 6.6e-06 55.8 240 25.0
ECA246G3837 Erigeron canadensis HOM05D005032 ORTHO05D006268 6.6e-06 55.8 229 27.1
Medtr1g111330 Medicago truncatula HOM05D005032 ORTHO05D006268 6.6e-06 55.8 184 26.6
AT1G25500 Arabidopsis thaliana HOM05D005032 ORTHO05D006268 8.6e-06 55.5 240 25.0
Ca_11190_v3 Cicer arietinum L. HOM05D005032 ORTHO05D006268 8.6e-06 55.5 184 26.6
Glyma.08G315000 Glycine max HOM05D005160 ORTHO05D006127 8.6e-06 55.5 51 52.9
TPR.G38289 Trifolium pratense HOM05D005032 ORTHO05D006268 8.6e-06 55.5 258 22.5


User provided reference genes

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