Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G1738 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 0.0e+00 1285.4 651 100.0
CDE07G0702 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 0.0e+00 1118.2 719 82.2
GSVIVG01018042001 Vitis vinifera HOM05D004359 ORTHO05D005052 1.5e-238 829.7 710 63.1
TAR362G1241 Trochodendron aralioides HOM05D004359 ORTHO05D005052 4.5e-238 828.2 704 63.9
Nn6g34169 Nelumbo nucifera HOM05D004359 ORTHO05D005052 7.7e-238 827.4 705 63.3
ATR0665G111 Amborella trichopoda HOM05D004359 ORTHO05D005052 9.4e-236 820.5 724 60.5
Aqoxy5G00400 Aquilegia oxysepala HOM05D004359 ORTHO05D005052 1.5e-233 813.1 723 61.0
CSS0047775 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.4e-231 806.6 709 61.5
Dinv44576 Davidia involucrata HOM05D004359 ORTHO05D005052 4.1e-231 805.1 706 61.9
Hma1.2p1_0549F.1_g177000 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 1.0e-229 800.4 707 61.8
Atru.chr4.2362 Acer truncatum HOM05D004359 ORTHO05D005052 3.8e-229 798.5 719 60.4
Oeu064246.1 Olea europaea HOM05D004359 ORTHO05D005052 3.2e-228 795.4 719 59.4
Ciclev10004430m.g Citrus clementina HOM05D004359 ORTHO05D005052 5.5e-228 794.7 711 60.9
Lj3C728G3 Lonicera japonica HOM05D004359 ORTHO05D005052 2.0e-225 786.2 733 59.5
CSS0047348 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.4e-223 780.0 707 59.5
PSO170G6248 Papaver somniferum HOM05D004359 ORTHO05D005052 7.0e-223 777.7 716 61.5
Cc03_g04290 Coffea canephora HOM05D004359 ORTHO05D005052 1.2e-222 776.9 705 59.3
QL06p000928 Quercus lobata HOM05D004359 ORTHO05D005052 7.7e-222 774.2 712 60.1
Gohir.A09G219100 Gossypium hirsutum HOM05D004359 ORTHO05D005052 1.0e-221 773.9 703 60.0
PSO210G2230 Papaver somniferum HOM05D004359 ORTHO05D005052 1.0e-221 773.9 711 61.6
Thecc.04G238800 Theobroma cacao HOM05D004359 ORTHO05D005052 1.3e-221 773.5 706 60.1
RcHm_v2.0_Chr4g0387781 Rosa chinensis HOM05D004359 ORTHO05D005052 2.2e-221 772.7 708 59.6
Actinidia04510 Actinidia chinensis HOM05D004359 ORTHO05D005052 2.9e-221 772.3 740 58.5
Os01g0773100 Oryza sativa ssp. japonica HOM05D004359 ORTHO05D005052 2.9e-221 772.3 714 58.3
CAN.G1437.8 Capsicum annuum HOM05D004359 ORTHO05D005052 6.5e-221 771.2 713 58.6
Cpa.g.sc44.123 Carica papaya HOM05D004359 ORTHO05D005052 1.5e-220 770.0 704 60.4
ClCG05G004860 Citrullus lanatus HOM05D004359 ORTHO05D005052 1.9e-220 769.6 711 58.5
Actinidia40118 Actinidia chinensis HOM05D004359 ORTHO05D005052 2.5e-220 769.2 713 59.9
Lsat_1_v5_gn_5_104320 Lactuca sativa HOM05D004359 ORTHO05D005052 3.2e-220 768.8 705 58.7
MSTRG.4062 Avicennia marina HOM05D004359 ORTHO05D005052 9.4e-220 767.3 702 58.8
COL.COLO4_21565 Corchorus olitorius HOM05D004359 ORTHO05D005052 9.4e-220 767.3 686 61.1
Potri.010G081800 Populus trichocarpa HOM05D004359 ORTHO05D005052 9.4e-220 767.3 714 58.4
FvH4_4g01230 Fragaria vesca HOM05D004359 ORTHO05D005052 1.2e-219 766.9 703 59.5
PGSC0003DMG400006446 Solanum tuberosum HOM05D004359 ORTHO05D005052 3.6e-219 765.4 705 58.6
HanXRQChr10g0294741 Helianthus annuus HOM05D004359 ORTHO05D005052 1.4e-218 763.5 704 59.1
Gorai.006G242500 Gossypium raimondii HOM05D004359 ORTHO05D005052 3.0e-218 762.3 729 58.2
Manes.03G173100 Manihot esculenta HOM05D004359 ORTHO05D005052 4.0e-218 761.9 706 59.1
MELO3C006500.2 Cucumis melo HOM05D004359 ORTHO05D005052 5.2e-218 761.5 716 57.8
FAN22G1739 Fragaria x ananassa HOM05D004359 ORTHO05D005052 5.2e-218 761.5 707 58.4
CsaV3_3G012900 Cucumis sativus L. HOM05D004359 ORTHO05D005052 8.8e-218 760.8 712 58.3
CiPaw.01G195300 Carya illinoinensis HOM05D004359 ORTHO05D005052 1.2e-217 760.4 711 59.4
FAN17G0057 Fragaria x ananassa HOM05D004359 ORTHO05D005052 2.0e-217 759.6 707 58.8
FAN12G0664 Fragaria x ananassa HOM05D004359 ORTHO05D005052 7.5e-217 757.7 706 58.9
Solyc09g082680.3 Solanum lycopersicum HOM05D004359 ORTHO05D005052 9.7e-217 757.3 705 58.2
Prupe.1G021300 Prunus persica HOM05D004359 ORTHO05D005052 1.7e-216 756.5 724 57.2
Sopen09g031540 Solanum pennellii HOM05D004359 ORTHO05D005052 1.7e-216 756.5 703 58.2
HanXRQChr16g0513791 Helianthus annuus HOM05D004359 ORTHO05D005052 6.3e-216 754.6 705 57.7
MD13G1199900 Malus domestica HOM05D004359 ORTHO05D005052 8.2e-216 754.2 711 58.1
Cfa008449 Carpinus fangiana HOM05D004359 ORTHO05D005052 1.4e-215 753.4 713 58.6
Sed0002276 Sechium edule HOM05D004359 ORTHO05D005052 2.4e-215 752.7 709 57.8
Sabra10G0061100 Salix brachista HOM05D004359 ORTHO05D005052 2.0e-214 749.6 707 57.6
CiPaw.02G120800 Carya illinoinensis HOM05D004359 ORTHO05D005052 5.9e-214 748.0 714 58.3
AUR62038653 Chenopodium quinoa HOM05D004359 ORTHO05D005052 1.3e-213 746.9 701 57.9
MD16G1199900 Malus domestica HOM05D004359 ORTHO05D005052 1.3e-213 746.9 711 57.7
CANSAT78G1027 Cannabis sativa HOM05D004359 ORTHO05D005052 5.0e-213 745.0 705 58.9
arahy.Tifrunner.gnm1.ann1.4267PD Arachis hypogaea HOM05D004359 ORTHO05D005052 1.9e-212 743.0 713 57.8
vmacro08371 Vaccinium macrocarpon HOM05D004359 ORTHO05D005052 3.2e-212 742.3 739 56.0
arahy.Tifrunner.gnm1.ann1.GV821P Arachis hypogaea HOM05D004359 ORTHO05D005052 8.0e-211 737.6 728 57.0
ECA234G1583 Erigeron canadensis HOM05D004359 ORTHO05D005052 6.8e-210 734.6 709 56.6
Migut.G00384 Erythranthe guttata HOM05D004359 ORTHO05D005052 8.8e-210 734.2 713 56.7
SGA_v2.0_scaffold191G40427 Striga asiatica HOM05D004359 ORTHO05D005052 1.5e-209 733.4 726 56.3
Migut.N00211 Erythranthe guttata HOM05D004359 ORTHO05D005052 2.6e-209 732.6 722 56.1
SEGI_41464 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 3.4e-209 732.3 710 56.5
Glyma.10G243900 Glycine max HOM05D004359 ORTHO05D005052 5.7e-209 731.5 703 57.0
THA.LOC104826064 Tarenaya hassleriana HOM05D004359 ORTHO05D005052 1.7e-208 729.9 708 56.4
TWI73G1293 Tripterygium wilfordii HOM05D004359 ORTHO05D005052 4.8e-208 728.4 709 57.7
Lj5g0004472 Lotus japonicus HOM05D004359 ORTHO05D005052 6.3e-208 728.0 702 56.6
Rhsim04G0197200 Rhododendron simsii HOM05D004359 ORTHO05D005052 6.3e-208 728.0 800 52.1
AUR62032000 Chenopodium quinoa HOM05D004359 ORTHO05D005052 2.4e-207 726.1 686 57.3
VMungo0720G0936 Vigna mungo HOM05D004359 ORTHO05D005052 4.1e-207 725.3 702 56.7
DCAR_030686 Daucus carota HOM05D004359 ORTHO05D005052 5.4e-207 724.9 707 54.6
Ca_10850_v3 Cicer arietinum L. HOM05D004359 ORTHO05D005052 7.0e-207 724.5 705 56.6
Glyma.20G150500 Glycine max HOM05D004359 ORTHO05D005052 9.1e-207 724.2 702 56.3
Phvul.007G061900 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 2.0e-206 723.0 702 56.8
PGR004G1328 Punica granatum HOM05D004359 ORTHO05D005052 4.5e-206 721.8 706 56.9
TPR.G26109 Trifolium pratense HOM05D004359 ORTHO05D005052 5.9e-206 721.5 705 56.5
SalBow2G3046 Salvia bowleyana HOM05D004359 ORTHO05D005052 7.7e-206 721.1 699 56.8
Medtr1g102840 Medicago truncatula HOM05D004359 ORTHO05D005052 4.2e-204 715.3 705 55.7
Lalb_Chr06g0160731 Lupinus albus HOM05D004359 ORTHO05D005052 5.5e-204 714.9 722 55.5
Aa31LG1G20640 Aethionema arabicum HOM05D004359 ORTHO05D005052 9.5e-204 714.1 706 55.4
Peaxi162Scf00316g00517 Petunia axillaris HOM05D004359 ORTHO05D005052 2.8e-203 712.6 684 56.1
Sc19g0003940 Simmondsia chinensis HOM05D004359 ORTHO05D005052 4.7e-203 711.8 683 57.8
Psat6g204080 Pisum sativum HOM05D004359 ORTHO05D005052 6.1e-203 711.4 702 55.8
Thhalv10006925m.g Eutrema salsugineum HOM05D004359 ORTHO05D005052 8.8e-202 707.6 708 55.4
Carub.0001s0339 Capsella rubella HOM05D004359 ORTHO05D005052 3.4e-201 705.7 720 55.0
Nitab4.5_0002541g0010 Nicotiana tabacum HOM05D004359 ORTHO05D005052 5.7e-201 704.9 685 55.5
Haze_11233 Corylus avellana HOM05D004359 ORTHO05D005052 7.5e-201 704.5 657 59.8
CARHR003530 Cardamine hirsuta HOM05D004359 ORTHO05D005052 8.3e-200 701.0 713 54.8
Sp1g03020 Schrenkiella parvula HOM05D004359 ORTHO05D005052 1.1e-199 700.7 707 55.0
SGA_v2.0_scaffold79G25594 Striga asiatica HOM05D004359 ORTHO05D005052 1.4e-199 700.3 700 54.4
EL10Ac3g06499 Beta vulgaris HOM05D004359 ORTHO05D005052 1.2e-198 697.2 710 54.4
Duzib212G0656 Durio zibethinus HOM05D004359 ORTHO05D005052 1.2e-198 697.2 682 56.3
MSTRG.21878 Avicennia marina HOM05D004359 ORTHO05D005052 1.6e-198 696.8 706 55.0
Oeu064245.1 Olea europaea HOM05D004359 ORTHO05D005052 1.6e-198 696.8 693 56.6
SalBow3G0915 Salvia bowleyana HOM05D004359 ORTHO05D005052 1.6e-198 696.8 721 52.7
AL1G13800 Arabidopsis lyrata HOM05D004359 ORTHO05D005052 3.5e-198 695.7 707 55.6
Duzib052G0975 Durio zibethinus HOM05D004359 ORTHO05D005052 1.7e-197 693.3 649 60.1
Gohir.D09G221300 Gossypium hirsutum HOM05D004359 ORTHO05D005052 1.7e-197 693.3 658 58.7
Glyma.10G003000 Glycine max HOM05D004359 ORTHO05D005052 6.6e-197 691.4 704 55.4
DCAR_002367 Daucus carota HOM05D004359 ORTHO05D005052 1.5e-196 690.3 708 53.1
Glyma.15G201600 Glycine max HOM05D004359 ORTHO05D005052 1.9e-196 689.9 706 55.0
Zm00001eb151770 Zea mays HOM05D004359 ORTHO05D005052 3.3e-196 689.1 714 53.5
BcaC05g24462 Brassica carinata HOM05D004359 ORTHO05D005052 1.6e-195 686.8 710 54.1
Nitab4.5_0000090g0250 Nicotiana tabacum HOM05D004359 ORTHO05D005052 1.6e-195 686.8 689 54.3
C05p02410 Brassica napus HOM05D004359 ORTHO05D005052 4.7e-195 685.3 710 54.4
BcaC05g24464 Brassica carinata HOM05D004359 ORTHO05D005052 6.1e-195 684.9 714 54.1
BolC5t29020H Brassica oleracea HOM05D004359 ORTHO05D005052 1.8e-194 683.3 710 53.8
Lalb_Chr03g0037471 Lupinus albus HOM05D004359 ORTHO05D005052 1.8e-194 683.3 706 54.7
A08p37060 Brassica napus HOM05D004359 ORTHO05D005052 2.3e-194 682.9 713 54.0
DCAR_027243 Daucus carota HOM05D004359 ORTHO05D005052 2.3e-189 666.4 642 57.5
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 8.9e-186 654.4 739 51.6
Phvul.007G278300 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 2.0e-185 653.3 704 52.1
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 2.6e-185 652.9 717 52.3
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 3.2e-183 646.0 721 51.9
Ah.04g154140 Amaranthus hybridus HOM05D004359 ORTHO05D005052 3.5e-182 642.5 683 51.1
CSS0018932 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 7.1e-167 591.7 534 61.0
Lj6A646G73 Lonicera japonica HOM05D004359 ORTHO05D005052 1.0e-165 587.8 630 54.1
VMungo0720G0919 Vigna mungo HOM05D004359 ORTHO05D005052 1.7e-165 587.0 684 49.3
SMO340G0218 Selaginella moellendorffii HOM05D004359 ORTHO05D005052 2.5e-164 583.2 702 47.6
Dinv14046 Davidia involucrata HOM05D004359 ORTHO05D005052 6.2e-163 578.6 608 55.3
Eucgr.H03411 Eucalyptus grandis HOM05D004359 ORTHO05D005052 1.3e-160 570.9 573 57.1
AT1G04200 Arabidopsis thaliana HOM05D004359 ORTHO05D005052 1.9e-159 567.0 620 54.0
unitig_736.g22459 Utricularia gibba HOM05D004359 ORTHO05D005052 3.2e-159 566.2 653 49.6
HPP92_015636 Vanilla planifolia HOM05D004359 ORTHO05D005052 5.4e-159 565.5 575 56.3
Zm00001eb370110 Zea mays HOM05D004359 ORTHO05D005052 3.1e-154 549.7 499 61.7
AagrBONN_evm.TU.Sc2ySwM_228.2874 Anthoceros agrestis HOM05D004359 ORTHO05D005052 2.6e-153 546.6 649 47.5
CSS0027981 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 9.3e-151 538.1 582 54.3
A10p02630 Brassica napus HOM05D004359 ORTHO05D005052 2.7e-150 536.6 715 47.3
CSS0020739 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 7.9e-142 508.4 523 56.0
Mapoly0021s0008 Marchantia polymorpha HOM05D004359 ORTHO05D005052 1.1e-132 478.0 711 41.1
AUR62033626 Chenopodium quinoa HOM05D004359 ORTHO05D005052 3.1e-122 443.4 546 49.5
SEGI_08230 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 4.7e-118 429.5 338 66.6
CBR_g41568 Chara braunii HOM05D004359 ORTHO05D005052 5.2e-109 399.4 869 34.4
CSS0049416 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.6e-92 344.0 254 70.9
Manes.15G033000 Manihot esculenta HOM05D004359 ORTHO05D005052 7.7e-89 332.4 423 48.9
CSS0043956 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 5.0e-88 329.7 223 74.9
unitig_899.g14876 Utricularia gibba HOM05D004359 ORTHO05D005052 1.9e-66 258.1 513 36.3
SHI00527 Sapria himalayana HOM05D004359 ORTHO05D005052 4.4e-60 236.9 365 40.0
BcaC06g35467 Brassica carinata HOM05D004359 ORTHO05D005052 1.1e-58 232.3 304 44.7
SEGI_13286 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 9.2e-50 202.6 184 58.2
Sabra08G0120100 Salix brachista HOM05D004359 ORTHO05D005052 3.3e-47 194.1 518 32.6
BolC5t32353H Brassica oleracea HOM05D004359 ORTHO05D005052 9.6e-47 192.6 260 43.8
FAN17G0101 Fragaria x ananassa HOM05D004359 ORTHO05D005052 2.0e-44 184.9 121 74.4
RcHm_v2.0_Chr4g0393601 Rosa chinensis HOM05D004359 ORTHO05D005052 7.9e-33 146.4 112 68.8
SHI00525 Sapria himalayana HOM05D004359 ORTHO05D005052 4.3e-31 140.6 171 48.5
TPR.G734 Trifolium pratense HOM05D004359 ORTHO05D005052 4.5e-28 130.6 164 43.9
BcaC05g27642 Brassica carinata HOM05D004359 ORTHO05D000212 1.1e-26 125.9 122 52.5
C05p36300 Brassica napus HOM05D004359 ORTHO05D005052 1.4e-26 125.6 126 50.0
BolC2t09698H Brassica oleracea HOM05D004359 ORTHO05D005052 4.6e-25 120.6 323 31.0
Hma1.2p1_0549F.1_g177020 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 1.3e-19 102.4 121 52.9
BcaC03g15924 Brassica carinata HOM05D004359 ORTHO05D005052 3.2e-18 97.8 241 31.5
SHI00526 Sapria himalayana HOM05D004359 ORTHO05D005052 2.3e-16 91.7 122 48.4
RcHm_v2.0_Chr4g0393591 Rosa chinensis HOM05D004359 ORTHO05D005052 2.0e-12 78.6 50 70.0
HPP92_015629 Vanilla planifolia HOM05D004359 ORTHO05D005052 4.5e-12 77.4 63 50.8
FAN13G0820 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.9e-10 72.0 47 66.0
FAN13G1580 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.9e-10 72.0 47 66.0
COL.COLO4_15960 Corchorus olitorius HOM05D004359 ORTHO05D005052 9.4e-10 69.7 49 67.3
COL.COLO4_21093 Corchorus olitorius HOM05D004359 ORTHO05D005052 4.6e-09 67.4 37 83.8
RcHm_v2.0_Chr4g0393611 Rosa chinensis HOM05D004359 ORTHO05D005052 7.9e-09 66.6 67 50.7


User provided reference genes

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