Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G1686 Ceratophyllum demersum HOM05D003571 ORTHO05D004193 5.7e-115 417.5 204 100.0
CDE06G0018 Ceratophyllum demersum HOM05D003571 ORTHO05D004193 1.0e-95 353.6 204 87.7
CiPaw.09G174600 Carya illinoinensis HOM05D003571 ORTHO05D004193 1.2e-67 260.4 203 64.5
Cfa017571 Carpinus fangiana HOM05D003571 ORTHO05D004193 4.4e-67 258.5 187 64.7
Aqoxy1G01208 Aquilegia oxysepala HOM05D003571 ORTHO05D004193 5.8e-67 258.1 192 64.1
QL07p044235 Quercus lobata HOM05D003571 ORTHO05D004193 2.9e-66 255.8 192 63.5
Haze_20580 Corylus avellana HOM05D003571 ORTHO05D004193 6.4e-66 254.6 188 63.3
Duzib093G0844 Durio zibethinus HOM05D003571 ORTHO05D004193 8.4e-66 254.2 193 63.7
COL.COLO4_26995 Corchorus olitorius HOM05D003571 ORTHO05D004193 5.4e-65 251.5 193 61.7
Duzib106G0011 Durio zibethinus HOM05D003571 ORTHO05D004193 7.1e-65 251.1 196 61.7
arahy.Tifrunner.gnm1.ann1.SVA4CI Arachis hypogaea HOM05D003571 ORTHO05D004193 9.3e-65 250.8 193 63.2
Dinv37294 Davidia involucrata HOM05D003571 ORTHO05D004193 9.3e-65 250.8 202 61.4
arahy.Tifrunner.gnm1.ann1.4G0IWV Arachis hypogaea HOM05D003571 ORTHO05D004193 1.6e-64 250.0 193 63.2
CSS0014133 Camellia sinensis var. sinensis HOM05D003571 ORTHO05D004193 2.1e-64 249.6 200 62.0
CSS0046537 Camellia sinensis var. sinensis HOM05D003571 ORTHO05D004193 2.1e-64 249.6 200 62.0
MELO3C014230.2 Cucumis melo HOM05D003571 ORTHO05D004193 2.1e-64 249.6 184 65.2
Sc02g0001770 Simmondsia chinensis HOM05D003571 ORTHO05D004193 2.1e-64 249.6 192 62.5
CsaV3_6G039650 Cucumis sativus L. HOM05D003571 ORTHO05D004193 2.7e-64 249.2 184 65.2
Medtr0041s0030 Medicago truncatula HOM05D003571 ORTHO05D004193 2.7e-64 249.2 195 63.1
ClCG04G009140 Citrullus lanatus HOM05D003571 ORTHO05D004193 3.5e-64 248.8 184 65.2
CiPaw.10G133100 Carya illinoinensis HOM05D003571 ORTHO05D004193 4.6e-64 248.4 193 62.7
Rhsim05G0180200 Rhododendron simsii HOM05D003571 ORTHO05D004193 1.7e-63 246.5 199 62.3
TAR623G0708 Trochodendron aralioides HOM05D003571 ORTHO05D004193 1.7e-63 246.5 204 60.8
FAN09G2327 Fragaria x ananassa HOM05D003571 ORTHO05D004193 2.3e-63 246.1 201 60.2
Lj5g0026041 Lotus japonicus HOM05D003571 ORTHO05D004193 3.0e-63 245.7 191 61.3
Sabra06G0100000 Salix brachista HOM05D003571 ORTHO05D004193 3.0e-63 245.7 181 64.1
Thecc.05G061900 Theobroma cacao HOM05D003571 ORTHO05D004193 3.0e-63 245.7 193 62.2
Gorai.006G166200 Gossypium raimondii HOM05D003571 ORTHO05D004193 5.1e-63 245.0 203 60.1
FvH4_6g16040 Fragaria vesca HOM05D003571 ORTHO05D004193 6.6e-63 244.6 199 60.3
Gohir.A04G073500 Gossypium hirsutum HOM05D003571 ORTHO05D004193 6.6e-63 244.6 179 65.4
Gohir.D04G112300 Gossypium hirsutum HOM05D003571 ORTHO05D004193 6.6e-63 244.6 179 65.4
Gorai.009G416700 Gossypium raimondii HOM05D003571 ORTHO05D004193 6.6e-63 244.6 179 65.4
Potri.006G127100 Populus trichocarpa HOM05D003571 ORTHO05D004193 6.6e-63 244.6 181 64.1
RcHm_v2.0_Chr3g0469791 Rosa chinensis HOM05D003571 ORTHO05D004193 6.6e-63 244.6 202 57.4
Cpa.g.sc390.5 Carica papaya HOM05D003571 ORTHO05D004193 8.7e-63 244.2 174 67.2
Potri.016G090800 Populus trichocarpa HOM05D003571 ORTHO05D004193 8.7e-63 244.2 181 63.5
SalBow3G2504 Salvia bowleyana HOM05D003571 ORTHO05D004193 8.7e-63 244.2 199 60.8
SalBow3G3339 Salvia bowleyana HOM05D003571 ORTHO05D004193 8.7e-63 244.2 199 60.8
FAN14G4150 Fragaria x ananassa HOM05D003571 ORTHO05D004193 1.1e-62 243.8 199 59.8
PSO063G1543 Papaver somniferum HOM05D003571 ORTHO05D004193 1.1e-62 243.8 205 61.0
Sed0010243 Sechium edule HOM05D003571 ORTHO05D004193 1.1e-62 243.8 180 63.9
Nn2g11512 Nelumbo nucifera HOM05D003571 ORTHO05D004193 1.5e-62 243.4 203 61.1
Ca_08847_v3 Cicer arietinum L. HOM05D003571 ORTHO05D004193 1.9e-62 243.0 191 63.4
Sed0017601 Sechium edule HOM05D003571 ORTHO05D004193 1.9e-62 243.0 175 66.9
GSVIVG01025701001 Vitis vinifera HOM05D003571 ORTHO05D004193 1.9e-62 243.0 179 64.2
Atru.chr8.1854 Acer truncatum HOM05D003571 ORTHO05D004193 2.5e-62 242.7 191 62.8
Cc00_g20760 Coffea canephora HOM05D003571 ORTHO05D004193 3.3e-62 242.3 196 59.7
FAN05G4723 Fragaria x ananassa HOM05D003571 ORTHO05D004193 3.3e-62 242.3 199 59.8
arahy.Tifrunner.gnm1.ann1.QCG7AI Arachis hypogaea HOM05D003571 ORTHO05D004193 4.3e-62 241.9 193 62.2
arahy.Tifrunner.gnm1.ann1.W3VJBC Arachis hypogaea HOM05D003571 ORTHO05D004193 4.3e-62 241.9 193 62.2
Glyma.10G058300 Glycine max HOM05D003571 ORTHO05D004193 4.3e-62 241.9 181 64.6
Gohir.A09G149000 Gossypium hirsutum HOM05D003571 ORTHO05D004193 4.3e-62 241.9 203 59.1
TWI74G0293 Tripterygium wilfordii HOM05D003571 ORTHO05D004193 4.3e-62 241.9 193 61.7
Gohir.D09G144900 Gossypium hirsutum HOM05D003571 ORTHO05D004193 5.6e-62 241.5 203 59.6
VMungo0720G3123 Vigna mungo HOM05D003571 ORTHO05D004193 5.6e-62 241.5 184 63.0
Manes.08G008200 Manihot esculenta HOM05D003571 ORTHO05D004193 9.6e-62 240.7 179 64.8
PSO339G3261 Papaver somniferum HOM05D003571 ORTHO05D004193 9.6e-62 240.7 204 60.3
TWI53G0828 Tripterygium wilfordii HOM05D003571 ORTHO05D004193 9.6e-62 240.7 194 60.3
AT5G03280 Arabidopsis thaliana HOM05D003571 ORTHO05D004193 1.6e-61 240.0 170 65.9
CARHR210060 Cardamine hirsuta HOM05D003571 ORTHO05D004193 1.6e-61 240.0 165 68.5
MD04G1096400 Malus domestica HOM05D003571 ORTHO05D004193 1.6e-61 240.0 203 59.6
Phvul.007G150600 Phaseolus vulgaris HOM05D003571 ORTHO05D004193 1.6e-61 240.0 184 63.6
Lj1g0021596 Lotus japonicus HOM05D003571 ORTHO05D004193 2.1e-61 239.6 207 61.8
Prupe.6G235600 Prunus persica HOM05D003571 ORTHO05D004193 2.1e-61 239.6 195 62.1
Hund17522 Selenicereus undatus HOM05D003571 ORTHO05D004193 2.1e-61 239.6 195 60.0
AL6G12590 Arabidopsis lyrata HOM05D003571 ORTHO05D004193 2.8e-61 239.2 170 65.9
EL10Ac1g01686 Beta vulgaris HOM05D003571 ORTHO05D004193 6.2e-61 238.0 189 62.4
Carub.0006s0208 Capsella rubella HOM05D003571 ORTHO05D004193 6.2e-61 238.0 170 66.5
Manes.09G063600 Manihot esculenta HOM05D003571 ORTHO05D004193 6.2e-61 238.0 177 64.4
Lj3C982T5 Lonicera japonica HOM05D003571 ORTHO05D004193 8.1e-61 237.7 184 62.5
TAR369G1024 Trochodendron aralioides HOM05D003571 ORTHO05D004193 8.1e-61 237.7 187 62.0
Aa31LG1G21830 Aethionema arabicum HOM05D003571 ORTHO05D004193 1.1e-60 237.3 174 63.8
FAN02G1851 Fragaria x ananassa HOM05D003571 ORTHO05D004193 1.1e-60 237.3 199 58.8
Sp6g39460 Schrenkiella parvula HOM05D003571 ORTHO05D004193 1.1e-60 237.3 178 65.2
Thhalv10012456m.g Eutrema salsugineum HOM05D003571 ORTHO05D004193 1.4e-60 236.9 178 65.2
Gohir.A11G324380 Gossypium hirsutum HOM05D003571 ORTHO05D004193 1.4e-60 236.9 200 59.5
Lalb_Chr25g0289091 Lupinus albus HOM05D003571 ORTHO05D004193 1.4e-60 236.9 183 62.3
TAR636G0639 Trochodendron aralioides HOM05D003571 ORTHO05D004193 1.4e-60 236.9 191 61.8
TAR636G1534 Trochodendron aralioides HOM05D003571 ORTHO05D004193 1.4e-60 236.9 191 61.8
VMungo1383G0779 Vigna mungo HOM05D003571 ORTHO05D004193 1.4e-60 236.9 184 66.8
Gorai.007G373800 Gossypium raimondii HOM05D003571 ORTHO05D004193 1.8e-60 236.5 202 59.4
Peaxi162Scf00123g00089 Petunia axillaris HOM05D003571 ORTHO05D004193 1.8e-60 236.5 203 58.6
Oeu005332.2 Olea europaea HOM05D003571 ORTHO05D004193 2.4e-60 236.1 198 59.1
Sopen09g002710 Solanum pennellii HOM05D003571 ORTHO05D004193 2.4e-60 236.1 203 59.6
TPR.G16043 Trifolium pratense HOM05D003571 ORTHO05D004193 2.4e-60 236.1 195 62.1
BcaC06g32048 Brassica carinata HOM05D003571 ORTHO05D004193 3.1e-60 235.7 195 60.5
CANSAT80G1173 Cannabis sativa HOM05D003571 ORTHO05D004193 4.0e-60 235.3 199 58.3
THA.LOC104826906 Tarenaya hassleriana HOM05D003571 ORTHO05D004193 4.0e-60 235.3 167 67.1
Nn2g13718 Nelumbo nucifera HOM05D003571 ORTHO05D004193 5.3e-60 235.0 184 60.9
PGSC0003DMG400021547 Solanum tuberosum HOM05D003571 ORTHO05D004193 5.3e-60 235.0 203 59.1
A10p32660 Brassica napus HOM05D003571 ORTHO05D004193 6.9e-60 234.6 196 59.2
BraA10t45303Z Brassica rapa HOM05D003571 ORTHO05D004193 6.9e-60 234.6 196 59.2
DCAR_020834 Daucus carota HOM05D003571 ORTHO05D004193 6.9e-60 234.6 163 66.9
Solyc09g007870.3 Solanum lycopersicum HOM05D003571 ORTHO05D004193 9.0e-60 234.2 203 59.1
BcaNung06157 Brassica carinata HOM05D003571 ORTHO05D004193 1.2e-59 233.8 172 64.5
C09p73500 Brassica napus HOM05D003571 ORTHO05D004193 1.2e-59 233.8 172 64.5
BolC9t60082H Brassica oleracea HOM05D003571 ORTHO05D004193 1.2e-59 233.8 172 64.5
Glyma.03G181400 Glycine max HOM05D003571 ORTHO05D004193 1.5e-59 233.4 191 61.3
Gohir.D11G343600 Gossypium hirsutum HOM05D003571 ORTHO05D004193 1.5e-59 233.4 202 58.9
vmacro08767 Vaccinium macrocarpon HOM05D003571 ORTHO05D004193 2.0e-59 233.0 199 58.8
ECA238G4675 Erigeron canadensis HOM05D003571 ORTHO05D004193 2.6e-59 232.6 195 58.5
AUR62034361 Chenopodium quinoa HOM05D003571 ORTHO05D004193 4.5e-59 231.9 202 58.9
MD12G1117400 Malus domestica HOM05D003571 ORTHO05D004193 4.5e-59 231.9 192 58.9
Phvul.001G177500 Phaseolus vulgaris HOM05D003571 ORTHO05D004193 4.5e-59 231.9 174 65.5
DCAR_009299 Daucus carota HOM05D003571 ORTHO05D004193 1.3e-58 230.3 159 69.8
Psat3g041280 Pisum sativum HOM05D003571 ORTHO05D004193 1.7e-58 229.9 189 59.3
Sc20g0005320 Simmondsia chinensis HOM05D003571 ORTHO05D004193 1.7e-58 229.9 162 65.4
Sabra16G0096300 Salix brachista HOM05D003571 ORTHO05D004193 2.2e-58 229.6 177 62.1
CSS0031681 Camellia sinensis var. sinensis HOM05D003571 ORTHO05D004193 3.8e-58 228.8 183 60.7
CSS0040711 Camellia sinensis var. sinensis HOM05D003571 ORTHO05D004193 3.8e-58 228.8 183 60.7
Eucgr.K01247 Eucalyptus grandis HOM05D003571 ORTHO05D004193 3.8e-58 228.8 201 56.2
PGR142G1072 Punica granatum HOM05D003571 ORTHO05D004193 4.9e-58 228.4 167 65.3
THA.LOC104816665 Tarenaya hassleriana HOM05D003571 ORTHO05D004193 4.9e-58 228.4 167 64.7
Oeu016972.1 Olea europaea HOM05D003571 ORTHO05D004193 1.1e-57 227.3 179 61.5
vmacro20027 Vaccinium macrocarpon HOM05D003571 ORTHO05D004193 1.1e-57 227.3 177 62.1
Lsat_1_v5_gn_2_106480 Lactuca sativa HOM05D003571 ORTHO05D004193 1.4e-57 226.9 186 60.2
MSTRG.19160 Avicennia marina HOM05D003571 ORTHO05D004193 1.9e-57 226.5 189 60.8
Ah.05g168560 Amaranthus hybridus HOM05D003571 ORTHO05D004193 3.2e-57 225.7 167 64.7
Lj2C113T5 Lonicera japonica HOM05D003571 ORTHO05D004193 4.2e-57 225.3 166 66.3
HanXRQChr07g0195371 Helianthus annuus HOM05D003571 ORTHO05D004193 5.5e-57 224.9 165 65.5
Rhsim04G0146600 Rhododendron simsii HOM05D003571 ORTHO05D004193 5.5e-57 224.9 181 61.9
Rhsim04G0146300 Rhododendron simsii HOM05D003571 ORTHO05D004193 1.2e-56 223.8 181 61.3
ATR0048G031 Amborella trichopoda HOM05D003571 ORTHO05D004193 1.6e-56 223.4 177 59.9
MBI07_g30986_MAGBIO Magnolia biondii HOM05D003571 ORTHO05D004193 2.1e-56 223.0 200 56.0
Migut.J00540 Erythranthe guttata HOM05D003571 ORTHO05D004193 7.9e-56 221.1 184 61.4
Lsat_1_v5_gn_1_53261 Lactuca sativa HOM05D003571 ORTHO05D004193 1.0e-55 220.7 165 63.6
HanXRQChr01g0027351 Helianthus annuus HOM05D003571 ORTHO05D004193 6.7e-55 218.0 165 61.8
PSO801G0607 Papaver somniferum HOM05D003571 ORTHO05D004193 1.5e-54 216.9 186 57.0
PSO339G5477 Papaver somniferum HOM05D003571 ORTHO05D004193 1.6e-53 213.4 186 56.5
SGA_v2.0_scaffold126G33934 Striga asiatica HOM05D003571 ORTHO05D004193 2.1e-53 213.0 178 60.1
ECA248G2435 Erigeron canadensis HOM05D003571 ORTHO05D004193 2.8e-53 212.6 165 61.2
HanXRQChr11g0350181 Helianthus annuus HOM05D003571 ORTHO05D004193 3.7e-53 212.2 165 63.6
Zm00001eb119690 Zea mays HOM05D003571 ORTHO05D004193 6.2e-53 211.5 153 62.7
MSTRG.26704 Avicennia marina HOM05D003571 ORTHO05D004193 8.1e-53 211.1 199 55.3
HPP92_012165 Vanilla planifolia HOM05D003571 ORTHO05D004193 8.1e-53 211.1 181 58.6
MSTRG.5747 Avicennia marina HOM05D003571 ORTHO05D004193 1.4e-52 210.3 178 59.0
Actinidia19664 Actinidia chinensis HOM05D003571 ORTHO05D004193 1.8e-52 209.9 162 62.3
Os07g0155600 Oryza sativa ssp. japonica HOM05D003571 ORTHO05D004193 2.2e-50 203.0 157 61.1
Os07g0156732 Oryza sativa ssp. japonica HOM05D003571 ORTHO05D004193 2.2e-50 203.0 157 61.1
Os07g0157401 Oryza sativa ssp. japonica HOM05D003571 ORTHO05D004193 2.2e-50 203.0 157 61.1
Os03g0700800 Oryza sativa ssp. japonica HOM05D003571 ORTHO05D004193 2.9e-50 202.6 156 62.2
SEGI_08907 Sequoiadendron giganteum HOM05D003571 ORTHO05D004193 4.2e-49 198.7 199 54.8
SMO334G0103 Selaginella moellendorffii HOM05D003571 ORTHO05D004193 1.0e-47 194.1 167 56.3
Lalb_Chr01g0018771 Lupinus albus HOM05D003571 ORTHO05D004193 1.3e-47 193.7 158 58.9
AUR62022345 Chenopodium quinoa HOM05D003571 ORTHO05D004193 1.8e-47 193.4 162 57.4
AagrBONN_evm.TU.Sc2ySwM_368.249 Anthoceros agrestis HOM05D003571 ORTHO05D004193 1.4e-44 183.7 187 51.9
Pp3c16_16830 Physcomitrium patens HOM05D003571 ORTHO05D004193 1.4e-44 183.7 181 53.6
Pp3c27_2050 Physcomitrium patens HOM05D003571 ORTHO05D004193 1.5e-43 180.3 182 52.2
Mapoly0001s0226 Marchantia polymorpha HOM05D003571 ORTHO05D004193 1.4e-41 173.7 179 51.4
CAN.G363.21 Capsicum annuum HOM05D003571 ORTHO05D004193 6.1e-32 141.7 113 54.9
Actinidia31342 Actinidia chinensis HOM05D003571 ORTHO05D004193 1.4e-31 140.6 110 58.2
Ciclev10010923m.g Citrus clementina HOM05D003571 ORTHO05D004193 6.7e-31 138.3 107 54.2
Nitab4.5_0000101g0260 Nicotiana tabacum HOM05D003571 ORTHO05D004193 3.3e-30 136.0 121 58.7
Cfa012856 Carpinus fangiana HOM05D003571 ORTHO05D004193 9.4e-25 117.9 74 77.0
Cfa005484 Carpinus fangiana HOM05D003571 ORTHO05D004193 2.2e-21 106.7 74 71.6
Glyma.13G145100 Glycine max HOM05D003571 ORTHO05D004193 2.8e-21 106.3 75 60.0
Zm00001eb247680 Zea mays HOM05D003571 ORTHO05D442597 5.3e-20 102.1 148 41.2
Peaxi162Scf00395g00044 Petunia axillaris HOM05D003571 ORTHO05D004193 2.6e-19 99.8 77 67.5
Cpa.g.sc390.2 Carica papaya HOM05D003571 ORTHO05D004193 1.2e-16 90.9 63 76.2
Actinidia14517 Actinidia chinensis HOM05D003571 ORTHO05D004193 6.1e-16 88.6 70 55.7
Actinidia13081 Actinidia chinensis HOM05D003571 ORTHO05D004193 1.8e-15 87.0 64 56.2
Cre07.g315200 Chlamydomonas reinhardtii HOM05D000702 ORTHO05D004193 2.0e-14 83.6 158 33.5
Nitab4.5_0027568g0010 Nicotiana tabacum HOM05D003571 ORTHO05D004193 6.8e-07 58.5 43 48.8


User provided reference genes

Program Settings