Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G1629 Ceratophyllum demersum HOM05D004867 ORTHO05D005729 1.0e-196 689.9 354 100.0
CDE07G1317 Ceratophyllum demersum HOM05D004867 ORTHO05D005729 6.3e-170 600.9 354 88.1
Nn2g15647 Nelumbo nucifera HOM05D004867 ORTHO05D005729 8.6e-42 175.3 444 34.2
TAR369G0777 Trochodendron aralioides HOM05D004867 ORTHO05D005729 8.9e-39 165.2 447 34.9
Duzib138G1711 Durio zibethinus HOM05D004867 ORTHO05D005729 5.8e-38 162.5 437 33.6
FvH4_7g00210 Fragaria vesca HOM05D004867 ORTHO05D005729 5.4e-36 156.0 434 34.1
Thecc.01G415900 Theobroma cacao HOM05D004867 ORTHO05D005729 5.4e-36 156.0 434 33.2
ATR0605G176 Amborella trichopoda HOM05D004867 ORTHO05D005729 7.0e-36 155.6 449 32.7
Gohir.D08G062800 Gossypium hirsutum HOM05D004867 ORTHO05D005729 7.0e-36 155.6 421 32.5
PSO339G0402 Papaver somniferum HOM05D004867 ORTHO05D005729 1.6e-35 154.5 438 31.7
PSO384G4425 Papaver somniferum HOM05D004867 ORTHO05D005729 1.6e-35 154.5 438 31.5
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 2.7e-35 153.7 443 33.6
Gohir.A08G053200 Gossypium hirsutum HOM05D004867 ORTHO05D005729 3.5e-35 153.3 421 32.5
Prupe.2G004800 Prunus persica HOM05D004867 ORTHO05D005729 6.0e-35 152.5 444 33.1
Gorai.004G065000 Gossypium raimondii HOM05D004867 ORTHO05D005729 5.1e-34 149.4 421 32.1
Atru.chr11.2686 Acer truncatum HOM05D004867 ORTHO05D005729 8.6e-34 148.7 453 32.2
Cfa010718 Carpinus fangiana HOM05D004867 ORTHO05D005729 1.5e-33 147.9 443 31.4
COL.COLO4_23912 Corchorus olitorius HOM05D001227 ORTHO05D005729 2.5e-33 147.1 435 32.9
THA.LOC104801018 Tarenaya hassleriana HOM05D004867 ORTHO05D005729 9.5e-33 145.2 393 33.3
CSS0003709 Camellia sinensis var. sinensis HOM05D004867 ORTHO05D005729 1.2e-32 144.8 448 33.5
Migut.B01348 Erythranthe guttata HOM05D004867 ORTHO05D005729 2.8e-32 143.7 395 33.9
CiPaw.13G001300 Carya illinoinensis HOM05D004867 ORTHO05D005729 3.6e-32 143.3 435 31.5
Oeu013590.1 Olea europaea HOM05D004867 ORTHO05D005729 3.6e-32 143.3 432 31.9
Aqoxy2G00085 Aquilegia oxysepala HOM05D004867 ORTHO05D005729 1.1e-31 141.7 429 32.6
Ciclev10030862m.g Citrus clementina HOM05D004867 ORTHO05D005729 1.8e-31 141.0 452 31.9
Zm00001eb094370 Zea mays HOM05D004867 ORTHO05D005729 2.3e-31 140.6 437 33.2
CANSAT11G0209 Cannabis sativa HOM05D004867 ORTHO05D005729 5.2e-31 139.4 442 32.1
C04p16700 Brassica napus HOM05D004867 ORTHO05D005729 5.8e-30 136.0 378 32.3
TWI73G0181 Tripterygium wilfordii HOM05D004867 ORTHO05D005729 7.5e-30 135.6 443 31.8
ECA234G3341 Erigeron canadensis HOM05D004867 ORTHO05D005729 9.9e-30 135.2 418 30.9
PGR031G3548 Punica granatum HOM05D004867 ORTHO05D005729 1.7e-29 134.4 453 31.1
BcaC01g05864 Brassica carinata HOM05D004867 ORTHO05D005729 2.2e-29 134.0 370 33.0
Hund24874 Selenicereus undatus HOM05D004867 ORTHO05D005729 3.7e-29 133.3 409 32.8
Ah.13g072190 Amaranthus hybridus HOM05D004867 ORTHO05D005729 6.4e-29 132.5 394 32.0
Zm00001eb183460 Zea mays HOM05D004867 ORTHO05D005729 1.4e-28 131.3 430 30.0
Rhsim01G0132300 Rhododendron simsii HOM05D004867 ORTHO05D005729 1.9e-28 131.0 436 30.0
VMungo1080G0666 Vigna mungo HOM05D004867 ORTHO05D005729 1.9e-28 131.0 436 31.0
AUR62008272 Chenopodium quinoa HOM05D004867 ORTHO05D005729 2.4e-28 130.6 391 32.5
Potri.001G228100 Populus trichocarpa HOM05D004867 ORTHO05D005729 3.2e-28 130.2 411 32.1
Lj7A565T27 Lonicera japonica HOM05D004867 ORTHO05D005729 5.4e-28 129.4 414 31.6
PGSC0003DMG402006333 Solanum tuberosum HOM05D004867 ORTHO05D005729 5.4e-28 129.4 439 30.8
TWI53G1678 Tripterygium wilfordii HOM05D004867 ORTHO05D005729 5.4e-28 129.4 446 30.5
GSVIVG01001400001 Vitis vinifera HOM05D004867 ORTHO05D005729 7.1e-28 129.0 316 37.3
Sp4g15230 Schrenkiella parvula HOM05D004867 ORTHO05D005729 1.2e-27 128.3 427 29.3
HPP92_023783 Vanilla planifolia HOM05D004867 ORTHO05D005729 1.2e-27 128.3 359 31.5
C03p21620 Brassica napus HOM05D004867 ORTHO05D005729 1.6e-27 127.9 370 30.8
BolC3t14546H Brassica oleracea HOM05D004867 ORTHO05D005729 1.6e-27 127.9 370 30.8
FAN10G1317 Fragaria x ananassa HOM05D000038 ORTHO05D005729 1.6e-27 127.9 417 32.1
Sc01g0010400 Simmondsia chinensis HOM05D004867 ORTHO05D005729 1.6e-27 127.9 415 30.6
BcaB01g03940 Brassica carinata HOM05D004867 ORTHO05D005729 2.1e-27 127.5 384 30.2
Phvul.005G063700 Phaseolus vulgaris HOM05D004867 ORTHO05D005729 2.1e-27 127.5 434 31.1
CARHR126800 Cardamine hirsuta HOM05D004867 ORTHO05D005729 2.7e-27 127.1 421 29.5
FAN01G2199 Fragaria x ananassa HOM05D004867 ORTHO05D005729 3.5e-27 126.7 415 31.6
Eucgr.I00278 Eucalyptus grandis HOM05D004867 ORTHO05D005729 4.6e-27 126.3 432 32.2
DCAR_029621 Daucus carota HOM05D004867 ORTHO05D005729 6.0e-27 125.9 408 31.1
Sopen01g033570 Solanum pennellii HOM05D004867 ORTHO05D005729 6.0e-27 125.9 439 30.3
Haze_03260 Corylus avellana HOM05D004867 ORTHO05D005729 7.8e-27 125.6 467 29.3
SalBow5G2297 Salvia bowleyana HOM05D004867 ORTHO05D005729 7.8e-27 125.6 424 31.8
AL4G28350 Arabidopsis lyrata HOM05D004867 ORTHO05D005729 1.3e-26 124.8 422 30.8
A03p18560 Brassica napus HOM05D004867 ORTHO05D005729 1.3e-26 124.8 374 32.1
Carub.0004s1428 Capsella rubella HOM05D004867 ORTHO05D005729 1.7e-26 124.4 429 30.1
EL10Ac3g04943 Beta vulgaris HOM05D004867 ORTHO05D005729 3.0e-26 123.6 387 33.1
AUR62031032 Chenopodium quinoa HOM05D004867 ORTHO05D005729 3.0e-26 123.6 386 32.4
Lj3g0015556 Lotus japonicus HOM05D004867 ORTHO05D005729 3.0e-26 123.6 438 30.1
Medtr3g026250 Medicago truncatula HOM05D004867 ORTHO05D005729 3.0e-26 123.6 437 29.5
Cpa.g.sc189.30 Carica papaya HOM05D004867 ORTHO05D005729 5.1e-26 122.9 446 31.6
FAN03G1960 Fragaria x ananassa HOM05D004867 ORTHO05D005729 5.1e-26 122.9 443 30.7
BraA03t11115Z Brassica rapa HOM05D004867 ORTHO05D005729 6.6e-26 122.5 374 31.3
THA.LOC104816028 Tarenaya hassleriana HOM05D004867 ORTHO05D005729 6.6e-26 122.5 391 32.7
SGA_v2.0_scaffold5G03115 Striga asiatica HOM05D004867 ORTHO05D005729 8.6e-26 122.1 447 30.0
FAN06G4114 Fragaria x ananassa HOM05D004867 ORTHO05D005729 1.9e-25 120.9 404 32.7
Solyc01g074010.4 Solanum lycopersicum HOM05D004867 ORTHO05D005729 1.9e-25 120.9 444 30.6
Cc02_g27130 Coffea canephora HOM05D004867 ORTHO05D005729 2.5e-25 120.6 202 44.6
Manes.07G001200 Manihot esculenta HOM05D004867 ORTHO05D005729 3.3e-25 120.2 420 29.3
QL04p002433 Quercus lobata HOM05D004867 ORTHO05D005729 4.3e-25 119.8 211 42.2
Glyma.08G150000 Glycine max HOM05D004867 ORTHO05D005729 7.3e-25 119.0 433 29.8
QL04p000390 Quercus lobata HOM05D004867 ORTHO05D005729 9.5e-25 118.6 211 42.2
AT2G32850 Arabidopsis thaliana HOM05D004867 ORTHO05D005729 1.6e-24 117.9 412 30.8
RcHm_v2.0_Chr1g0313621 Rosa chinensis HOM05D004867 ORTHO05D005729 1.6e-24 117.9 354 34.2
Duzib133G0042 Durio zibethinus HOM05D004867 ORTHO05D005729 2.8e-24 117.1 429 30.1
Glyma.15G269800 Glycine max HOM05D004867 ORTHO05D005729 1.4e-23 114.8 433 28.9
MELO3C023945.2 Cucumis melo HOM05D004867 ORTHO05D005729 3.1e-23 113.6 419 29.1
Oeu046529.3 Olea europaea HOM05D004867 ORTHO05D005729 3.1e-23 113.6 204 43.6
Sed0010975 Sechium edule HOM05D004867 ORTHO05D005729 4.0e-23 113.2 417 28.5
HanXRQChr17g0560591 Helianthus annuus HOM05D004867 ORTHO05D005729 6.8e-23 112.5 402 29.6
Psat5g206720 Pisum sativum HOM05D004867 ORTHO05D005729 6.8e-23 112.5 439 29.4
unitig_749.g13484 Utricularia gibba HOM05D004867 ORTHO05D005729 6.8e-23 112.5 374 32.9
Actinidia21571 Actinidia chinensis HOM05D004867 ORTHO05D005729 4.4e-22 109.8 407 29.5
CsaV3_3G032420 Cucumis sativus L. HOM05D004867 ORTHO05D005729 4.4e-22 109.8 421 29.7
EL10Ac5g10816 Beta vulgaris HOM05D004867 ORTHO05D005729 5.8e-22 109.4 433 30.5
CSS0017046 Camellia sinensis var. sinensis HOM05D004867 ORTHO05D005729 5.8e-22 109.4 441 29.9
SGA_v2.0_scaffold260G45878 Striga asiatica HOM05D004867 ORTHO05D005729 2.2e-21 107.5 207 41.5
Thhalv10016354m.g Eutrema salsugineum HOM05D004867 ORTHO05D005729 3.8e-21 106.7 430 28.4
arahy.Tifrunner.gnm1.ann1.8L40SG Arachis hypogaea HOM05D004867 ORTHO05D005729 4.9e-21 106.3 431 28.1
Aa31LG5G4500 Aethionema arabicum HOM05D004867 ORTHO05D005729 5.4e-20 102.8 409 30.1
MD14G1085700 Malus domestica HOM05D004867 ORTHO05D005729 5.4e-20 102.8 452 29.0
Sed0025822 Sechium edule HOM05D004867 ORTHO05D005729 9.2e-20 102.1 423 27.9
CDE10G0581 Ceratophyllum demersum HOM05D004867 ORTHO05D005729 2.7e-19 100.5 444 26.8
Peaxi162Scf00058g00820 Petunia axillaris HOM05D004867 ORTHO05D005729 6.0e-19 99.4 233 37.8
Peaxi162Scf00081g00024 Petunia axillaris HOM05D004867 ORTHO05D005729 6.0e-19 99.4 224 38.8
Nitab4.5_0003792g0030 Nicotiana tabacum HOM05D004867 ORTHO05D005729 7.8e-19 99.0 200 40.0
Sabra16G0136000 Salix brachista HOM05D004867 ORTHO05D005729 1.3e-18 98.2 207 39.6
TPR.G12241 Trifolium pratense HOM05D004867 ORTHO05D005729 1.3e-18 98.2 316 33.5
Lsat_1_v5_gn_4_46360 Lactuca sativa HOM05D001227 ORTHO05D005729 1.5e-17 94.7 397 27.5
Nitab4.5_0000892g0050 Nicotiana tabacum HOM05D004867 ORTHO05D005729 1.2e-16 91.7 209 38.8
SEGI_25422 Sequoiadendron giganteum HOM05D004867 ORTHO05D005729 1.6e-16 91.3 498 26.3
CAN.G1393.5 Capsicum annuum HOM05D004867 ORTHO05D005729 2.1e-16 90.9 196 39.8
CAN.G3313.1 Capsicum annuum HOM05D004867 ORTHO05D005729 2.1e-16 90.9 196 39.8
Dinv43921 Davidia involucrata HOM05D004867 ORTHO05D005729 2.1e-16 90.9 143 46.2
ClCG10G012610 Citrullus lanatus HOM05D004867 ORTHO05D005729 1.1e-15 88.6 332 30.1
Lalb_Chr25g0283491 Lupinus albus HOM05D004867 ORTHO05D005729 1.2e-14 85.1 219 36.5
Zm00001eb344610 Zea mays HOM05D004867 ORTHO05D005729 1.3e-13 81.6 233 34.3
BcaB02g10502 Brassica carinata HOM05D004867 ORTHO05D005729 3.2e-12 77.0 227 32.2
Lj9C624G5 Lonicera japonica HOM05D004867 ORTHO05D005729 5.4e-12 76.3 333 27.9
Ca_25995_v3 Cicer arietinum L. HOM05D004867 ORTHO05D005729 9.3e-12 75.5 416 26.2
Zm00001eb245770 Zea mays HOM05D004867 ORTHO05D005729 3.6e-08 63.5 145 32.4
Mapoly0022s0104 Marchantia polymorpha HOM05D004867 ORTHO05D005729 2.0e-06 57.8 230 29.1
Lalb_Chr19g0131991 Lupinus albus HOM05D004867 ORTHO05D005729 3.4e-06 57.0 302 27.2
SMO147G0308 Selaginella moellendorffii HOM05D004867 ORTHO05D005729 3.4e-06 57.0 238 27.7
Actinidia15860 Actinidia chinensis HOM05D004867 ORTHO05D005729 5.8e-06 56.2 78 47.4


User provided reference genes

Program Settings