Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G1568 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 1.0e-67 260.0 133 100.0
CDE02G1085 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 3.6e-41 171.8 99 88.9
Sabra05G0046800 Salix brachista HOM05D006741 ORTHO05D008434 3.7e-14 82.0 114 42.1
Hma1.2p1_0430F.1_g151390 Hydrangea macrophylla HOM05D006741 ORTHO05D008434 9.2e-13 77.4 71 54.9
Potri.013G040800 Populus trichocarpa HOM05D006741 ORTHO05D008434 9.2e-13 77.4 93 47.3
TWI75G1374 Tripterygium wilfordii HOM05D006741 ORTHO05D008434 1.2e-12 77.0 102 44.1
PSO210G6928 Papaver somniferum HOM05D006741 ORTHO05D008434 1.6e-12 76.6 93 45.2
PSO210G4778 Papaver somniferum HOM05D006741 ORTHO05D008434 2.0e-12 76.3 93 45.2
Atru.chr1.3525 Acer truncatum HOM05D006741 ORTHO05D008434 2.7e-12 75.9 102 46.1
arahy.Tifrunner.gnm1.ann1.CS2PXA Arachis hypogaea HOM05D006741 ORTHO05D008434 3.5e-12 75.5 76 48.7
CANSAT56G2677 Cannabis sativa HOM05D006741 ORTHO05D008434 3.5e-12 75.5 105 41.0
Sed0020930 Sechium edule HOM05D006741 ORTHO05D008434 3.5e-12 75.5 111 40.5
Potri.005G053300 Populus trichocarpa HOM05D006741 ORTHO05D008434 4.5e-12 75.1 107 43.0
CiPaw.01G231300 Carya illinoinensis HOM05D006741 ORTHO05D008434 5.9e-12 74.7 105 42.9
Dinv30435 Davidia involucrata HOM05D006741 ORTHO05D008434 7.8e-12 74.3 85 48.2
GSVIVG01016979001 Vitis vinifera HOM05D006741 ORTHO05D008434 7.8e-12 74.3 108 42.6
DCAR_023081 Daucus carota HOM05D006741 ORTHO05D008434 1.3e-11 73.6 88 44.3
Sabra13G0037700 Salix brachista HOM05D006741 ORTHO05D008434 1.7e-11 73.2 90 46.7
MBI01_g10133_MAGBIO Magnolia biondii HOM05D006741 ORTHO05D008434 2.3e-11 72.8 100 43.0
Aqoxy7G03978 Aquilegia oxysepala HOM05D006741 ORTHO05D008434 2.9e-11 72.4 103 39.8
CsaV3_3G023590 Cucumis sativus L. HOM05D006741 ORTHO05D008434 2.9e-11 72.4 111 43.2
Thecc.06G100200 Theobroma cacao HOM05D006741 ORTHO05D008434 2.9e-11 72.4 107 44.9
Cfa003646 Carpinus fangiana HOM05D006741 ORTHO05D008434 3.9e-11 72.0 108 38.0
Prupe.3G058900 Prunus persica HOM05D006741 ORTHO05D008434 3.9e-11 72.0 80 46.2
arahy.Tifrunner.gnm1.ann1.X4D5DL Arachis hypogaea HOM05D006741 ORTHO05D008434 5.0e-11 71.6 77 48.1
Gohir.A06G189500 Gossypium hirsutum HOM05D006741 ORTHO05D008434 5.0e-11 71.6 79 50.6
Nn6g35322 Nelumbo nucifera HOM05D006741 ORTHO05D008434 5.0e-11 71.6 101 48.5
Gohir.D06G197900 Gossypium hirsutum HOM05D006741 ORTHO05D008434 6.6e-11 71.2 79 49.4
QL05p019947 Quercus lobata HOM05D006741 ORTHO05D008434 6.6e-11 71.2 111 39.6
Sc12g0010170 Simmondsia chinensis HOM05D006741 ORTHO05D008434 6.6e-11 71.2 76 46.1
SGA_v2.0_scaffold69G23318 Striga asiatica HOM05D006741 ORTHO05D008434 6.6e-11 71.2 85 48.2
Actinidia39136 Actinidia chinensis HOM05D006741 ORTHO05D008434 1.1e-10 70.5 86 45.3
TAR636G1866 Trochodendron aralioides HOM05D006741 ORTHO05D008434 1.1e-10 70.5 68 54.4
Manes.11G033400 Manihot esculenta HOM05D006741 ORTHO05D008434 1.5e-10 70.1 102 42.2
Gorai.010G230700 Gossypium raimondii HOM05D006741 ORTHO05D008434 1.9e-10 69.7 79 48.1
Actinidia09006 Actinidia chinensis HOM05D006741 ORTHO05D008434 2.5e-10 69.3 86 45.3
Ciclev10027417m.g Citrus clementina HOM05D006741 ORTHO05D008434 2.5e-10 69.3 110 40.0
MELO3C013001.2 Cucumis melo HOM05D006741 ORTHO05D008434 2.5e-10 69.3 127 39.4
ClCG07G013320 Citrullus lanatus HOM05D006741 ORTHO05D008434 3.3e-10 68.9 126 38.9
COL.COLO4_30514 Corchorus olitorius HOM05D006741 ORTHO05D008434 3.3e-10 68.9 75 48.0
Duzib192G0766 Durio zibethinus HOM05D006741 ORTHO05D008434 3.3e-10 68.9 68 51.5
Cpa.g.sc25.10 Carica papaya HOM05D006741 ORTHO05D008434 1.2e-09 67.0 100 43.0
RcHm_v2.0_Chr2g0140551 Rosa chinensis HOM05D006741 ORTHO05D008434 1.2e-09 67.0 75 42.7
Lj9A513G60 Lonicera japonica HOM05D006741 ORTHO05D008434 2.1e-09 66.2 71 50.7
Oeu017120.1 Olea europaea HOM05D006741 ORTHO05D008434 2.1e-09 66.2 93 43.0
PGSC0003DMG400026441 Solanum tuberosum HOM05D006741 ORTHO05D008434 2.1e-09 66.2 81 48.1
Solyc12g044620.2 Solanum lycopersicum HOM05D006741 ORTHO05D008434 3.6e-09 65.5 81 46.9
Rhsim08G0227700 Rhododendron simsii HOM05D006741 ORTHO05D008434 6.1e-09 64.7 92 45.7
CSS0005978 Camellia sinensis var. sinensis HOM05D006741 ORTHO05D008434 1.0e-08 63.9 94 39.4
CSS0034583 Camellia sinensis var. sinensis HOM05D006741 ORTHO05D008434 1.0e-08 63.9 94 39.4
AUR62031924 Chenopodium quinoa HOM05D006741 ORTHO05D008434 1.8e-08 63.2 67 44.8
Duzib235G1269 Durio zibethinus HOM05D006741 ORTHO05D008434 1.8e-08 63.2 68 48.5
PGR102G3207 Punica granatum HOM05D006741 ORTHO05D008434 1.8e-08 63.2 91 39.6
Hund28829 Selenicereus undatus HOM05D006741 ORTHO05D008434 1.8e-08 63.2 75 42.7
EL10Ac3g05317 Beta vulgaris HOM05D006741 ORTHO05D008434 2.3e-08 62.8 75 38.7
Os05g0532500 Oryza sativa ssp. japonica HOM05D006741 ORTHO05D008434 2.3e-08 62.8 80 42.5
Nitab4.5_0001172g0120 Nicotiana tabacum HOM05D006741 ORTHO05D008434 3.1e-08 62.4 72 50.0
Migut.I00896 Erythranthe guttata HOM05D006741 ORTHO05D008434 4.0e-08 62.0 70 48.6
MD17G1183900 Malus domestica HOM05D006741 ORTHO05D008434 4.0e-08 62.0 72 43.1
FAN05G1069 Fragaria x ananassa HOM05D006741 ORTHO05D008434 5.2e-08 61.6 69 44.9
Lj3g0008384 Lotus japonicus HOM05D006741 ORTHO05D008434 5.2e-08 61.6 83 41.0
MSTRG.11026 Avicennia marina HOM05D006741 ORTHO05D008434 6.8e-08 61.2 79 41.8
FAN14G5382 Fragaria x ananassa HOM05D006741 ORTHO05D008434 8.9e-08 60.8 97 37.1
Nitab4.5_0004241g0050 Nicotiana tabacum HOM05D006741 ORTHO05D008434 8.9e-08 60.8 83 48.2
CARHR253650 Cardamine hirsuta HOM05D006741 ORTHO05D008434 1.2e-07 60.5 100 36.0
FvH4_6g32410 Fragaria vesca HOM05D006741 ORTHO05D008434 1.5e-07 60.1 94 37.2
Hund28870 Selenicereus undatus HOM05D006741 ORTHO05D008434 1.5e-07 60.1 75 41.3
FAN02G4526 Fragaria x ananassa HOM05D006741 ORTHO05D008434 2.0e-07 59.7 97 35.1
Lsat_1_v5_gn_4_97420 Lactuca sativa HOM05D006741 ORTHO05D008434 2.0e-07 59.7 65 49.2
Thhalv10028639m.g Eutrema salsugineum HOM05D006741 ORTHO05D008434 2.6e-07 59.3 96 35.4
THA.LOC104806335 Tarenaya hassleriana HOM05D006741 ORTHO05D008434 2.6e-07 59.3 97 38.1
Ah.01g005790 Amaranthus hybridus HOM05D006741 ORTHO05D008434 3.4e-07 58.9 77 37.7
Carub.0006s3171 Capsella rubella HOM05D006741 ORTHO05D008434 3.4e-07 58.9 70 40.0
Aa31LG9G10130 Aethionema arabicum HOM05D006741 ORTHO05D008434 4.4e-07 58.5 65 43.1
MD09G1202700 Malus domestica HOM05D006741 ORTHO05D008434 4.4e-07 58.5 73 45.2
Sopen12g023080 Solanum pennellii HOM05D006741 ORTHO05D008434 4.4e-07 58.5 81 44.4
AT4G12540 Arabidopsis thaliana HOM05D006741 ORTHO05D008434 5.8e-07 58.2 83 38.6
Lalb_Chr01g0013161 Lupinus albus HOM05D006741 ORTHO05D008434 5.8e-07 58.2 91 39.6
HanXRQChr09g0276261 Helianthus annuus HOM05D006741 ORTHO05D008434 7.5e-07 57.8 61 52.5
AL6G47480 Arabidopsis lyrata HOM05D006741 ORTHO05D008434 9.8e-07 57.4 84 38.1
Sp6g04980 Schrenkiella parvula HOM05D006741 ORTHO05D008434 9.8e-07 57.4 83 37.3
SpUn0055_0020 Schrenkiella parvula HOM05D006741 ORTHO05D008434 9.8e-07 57.4 83 37.3
Cc04_g02540 Coffea canephora HOM05D006741 ORTHO05D008434 1.7e-06 56.6 95 35.8
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 1.7e-06 56.6 97 34.0
ATR0705G093 Amborella trichopoda HOM05D006741 ORTHO05D008434 2.2e-06 56.2 97 33.0
Ca_23263_v3 Cicer arietinum L. HOM05D006741 ORTHO05D008434 2.9e-06 55.8 77 42.9
Ca_23272_v3 Cicer arietinum L. HOM05D006741 ORTHO05D008434 2.9e-06 55.8 77 42.9
A09p26830 Brassica napus HOM05D006741 ORTHO05D008434 8.3e-06 54.3 91 37.4


User provided reference genes

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