Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G1557 Ceratophyllum demersum HOM05D006682 ORTHO05D008627 8.0e-149 530.4 268 100.0
CDE03G0115 Ceratophyllum demersum HOM05D006682 ORTHO05D008627 2.2e-114 416.0 226 94.2
Nn3g18894 Nelumbo nucifera HOM05D006682 ORTHO05D008627 3.1e-84 315.8 206 74.3
PGR102G2323 Punica granatum HOM05D006682 ORTHO05D008627 2.9e-82 309.3 206 71.8
Manes.06G166600 Manihot esculenta HOM05D006682 ORTHO05D008627 4.2e-81 305.4 198 71.7
Aa31sc655G20 Aethionema arabicum HOM05D006682 ORTHO05D008627 5.4e-81 305.1 198 72.2
A09p44960 Brassica napus HOM05D006682 ORTHO05D008627 1.2e-80 303.9 198 71.7
BraA09t39955Z Brassica rapa HOM05D006682 ORTHO05D008627 1.2e-80 303.9 198 71.7
Dinv36276 Davidia involucrata HOM05D006682 ORTHO05D008627 2.1e-80 303.1 209 68.9
BcaB01g00416 Brassica carinata HOM05D006682 ORTHO05D008627 3.5e-80 302.4 205 70.7
THA.LOC104807019 Tarenaya hassleriana HOM05D006682 ORTHO05D008627 3.5e-80 302.4 214 66.8
BcaB01g00476 Brassica carinata HOM05D006682 ORTHO05D008627 6.0e-80 301.6 209 69.4
C08p27040 Brassica napus HOM05D006682 ORTHO05D008627 6.0e-80 301.6 203 70.0
BolC8t50319H Brassica oleracea HOM05D006682 ORTHO05D008627 6.0e-80 301.6 209 69.4
CARHR161420 Cardamine hirsuta HOM05D006682 ORTHO05D008627 7.9e-80 301.2 202 71.8
Haze_23101 Corylus avellana HOM05D006682 ORTHO05D008627 1.0e-79 300.8 217 67.3
Eucgr.B03679 Eucalyptus grandis HOM05D006682 ORTHO05D008627 1.0e-79 300.8 190 74.2
TAR623G0396 Trochodendron aralioides HOM05D006682 ORTHO05D008627 1.0e-79 300.8 212 69.8
Sp5g10480 Schrenkiella parvula HOM05D006682 ORTHO05D008627 1.3e-79 300.4 203 70.0
MBI13_g31544_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 1.8e-79 300.1 201 75.6
TAR623G0191 Trochodendron aralioides HOM05D006682 ORTHO05D008627 1.8e-79 300.1 212 69.3
FAN25G2895 Fragaria x ananassa HOM05D006682 ORTHO05D008627 2.3e-79 299.7 204 72.1
Cfa009742 Carpinus fangiana HOM05D006682 ORTHO05D008627 3.0e-79 299.3 217 67.3
MD11G1029300 Malus domestica HOM05D006682 ORTHO05D008627 3.0e-79 299.3 194 72.7
Thhalv10010653m.g Eutrema salsugineum HOM05D006682 ORTHO05D008627 5.1e-79 298.5 209 68.9
AL5G32250 Arabidopsis lyrata HOM05D006682 ORTHO05D008627 6.7e-79 298.1 205 69.8
FvH4_3g43060 Fragaria vesca HOM05D006682 ORTHO05D008627 6.7e-79 298.1 198 73.2
FAN11G1823 Fragaria x ananassa HOM05D006682 ORTHO05D008627 6.7e-79 298.1 198 73.2
Prupe.6G023600 Prunus persica HOM05D006682 ORTHO05D008627 6.7e-79 298.1 221 65.6
RcHm_v2.0_Chr5g0077121 Rosa chinensis HOM05D006682 ORTHO05D008627 6.7e-79 298.1 205 70.2
ClCG03G013350 Citrullus lanatus HOM05D006682 ORTHO05D008627 1.5e-78 297.0 200 71.5
MD03G1024200 Malus domestica HOM05D006682 ORTHO05D008627 1.5e-78 297.0 194 72.2
FAN21G3201 Fragaria x ananassa HOM05D006682 ORTHO05D008627 1.9e-78 296.6 198 72.7
AT3G51790 Arabidopsis thaliana HOM05D006682 ORTHO05D008627 2.5e-78 296.2 197 71.6
CSS0008647 Camellia sinensis var. sinensis HOM05D006682 ORTHO05D008627 3.3e-78 295.8 199 69.8
FAN16G2773 Fragaria x ananassa HOM05D006682 ORTHO05D008627 3.3e-78 295.8 198 72.2
Aqoxy2G00055 Aquilegia oxysepala HOM05D006682 ORTHO05D008627 4.3e-78 295.4 200 72.0
Thecc.05G010600 Theobroma cacao HOM05D006682 ORTHO05D008627 7.4e-78 294.7 198 70.2
Lj1A355T5 Lonicera japonica HOM05D006682 ORTHO05D008627 9.6e-78 294.3 196 69.9
CsaV3_1G042700 Cucumis sativus L. HOM05D006682 ORTHO05D008627 8.1e-77 291.2 197 70.6
Sc16g0009700 Simmondsia chinensis HOM05D006682 ORTHO05D008627 8.1e-77 291.2 210 68.1
COL.COLO4_14494 Corchorus olitorius HOM05D006682 ORTHO05D008627 1.1e-76 290.8 199 68.3
Duzib128G1702 Durio zibethinus HOM05D006682 ORTHO05D008627 1.4e-76 290.4 210 67.1
CANSAT80G0450 Cannabis sativa HOM05D006682 ORTHO05D008627 2.4e-76 289.7 216 63.4
Cpa.g.sc21.74 Carica papaya HOM05D006682 ORTHO05D008627 2.4e-76 289.7 197 68.0
MELO3C015204.2 Cucumis melo HOM05D006682 ORTHO05D008627 2.4e-76 289.7 197 70.1
Lsat_1_v5_gn_8_74980 Lactuca sativa HOM05D006682 ORTHO05D008627 2.4e-76 289.7 211 64.0
QL01p005270 Quercus lobata HOM05D006682 ORTHO05D008627 2.4e-76 289.7 190 70.5
CiPaw.13G163300 Carya illinoinensis HOM05D006682 ORTHO05D008627 5.3e-76 288.5 196 68.4
Hma1.2p1_0401F.1_g144700 Hydrangea macrophylla HOM05D006682 ORTHO05D008627 6.9e-76 288.1 196 70.9
arahy.Tifrunner.gnm1.ann1.1N3H6Z Arachis hypogaea HOM05D006682 ORTHO05D008627 9.0e-76 287.7 223 66.4
Ciclev10012386m.g Citrus clementina HOM05D006682 ORTHO05D008627 9.0e-76 287.7 195 68.7
Sabra03G0151700 Salix brachista HOM05D006682 ORTHO05D008627 1.5e-75 287.0 201 70.6
Sed0028089 Sechium edule HOM05D006682 ORTHO05D008627 1.5e-75 287.0 201 68.7
Gohir.A01G228400 Gossypium hirsutum HOM05D006682 ORTHO05D008627 2.0e-75 286.6 199 68.3
TWI38G0692 Tripterygium wilfordii HOM05D006682 ORTHO05D008627 2.0e-75 286.6 236 62.7
ECA233G5908 Erigeron canadensis HOM05D006682 ORTHO05D008627 2.6e-75 286.2 196 68.4
Potri.003G205200 Populus trichocarpa HOM05D006682 ORTHO05D008627 3.4e-75 285.8 201 70.6
Cpa.g.sc12.111 Carica papaya HOM05D006682 ORTHO05D008627 7.6e-75 284.6 200 68.0
Gohir.D01G218300 Gossypium hirsutum HOM05D006682 ORTHO05D008627 7.6e-75 284.6 201 67.7
Gorai.002G265000 Gossypium raimondii HOM05D006682 ORTHO05D008627 7.6e-75 284.6 201 67.7
arahy.Tifrunner.gnm1.ann1.11YZMF Arachis hypogaea HOM05D006682 ORTHO05D008627 2.2e-74 283.1 223 65.5
ATR0605G320 Amborella trichopoda HOM05D006682 ORTHO05D008627 2.9e-74 282.7 197 73.1
Lalb_Chr08g0245621 Lupinus albus HOM05D006682 ORTHO05D008627 2.9e-74 282.7 201 67.7
EL10Ac3g05849 Beta vulgaris HOM05D006682 ORTHO05D008627 2.5e-73 279.6 210 65.7
Rhsim13G0223700 Rhododendron simsii HOM05D006682 ORTHO05D008627 9.3e-73 277.7 194 69.6
Lj3g0017048 Lotus japonicus HOM05D006682 ORTHO05D008627 4.6e-72 275.4 195 66.7
Glyma.12G056800 Glycine max HOM05D006682 ORTHO05D008627 6.0e-72 275.0 191 68.6
Glyma.11G132200 Glycine max HOM05D006682 ORTHO05D008627 2.3e-71 273.1 191 67.5
Phvul.011G058400 Phaseolus vulgaris HOM05D006682 ORTHO05D008627 2.3e-71 273.1 196 66.8
Actinidia16314 Actinidia chinensis HOM05D006682 ORTHO05D008627 3.0e-71 272.7 198 64.6
Ah.13g066750 Amaranthus hybridus HOM05D006682 ORTHO05D008627 1.5e-70 270.4 209 63.6
Psat7g213040 Pisum sativum HOM05D006682 ORTHO05D008627 3.3e-70 269.2 219 61.2
SHI11277 Sapria himalayana HOM05D006682 ORTHO05D008627 3.3e-70 269.2 194 66.0
MSTRG.18416 Avicennia marina HOM05D006682 ORTHO05D008627 7.4e-70 268.1 230 59.6
VMungo1127G1130 Vigna mungo HOM05D006682 ORTHO05D008627 9.6e-70 267.7 190 66.8
Medtr4g065610 Medicago truncatula HOM05D006682 ORTHO05D008627 2.8e-69 266.2 202 62.9
Os10g0545800 Oryza sativa ssp. japonica HOM05D006682 ORTHO05D008627 8.2e-69 264.6 185 66.5
Cc00_g20370 Coffea canephora HOM05D006682 ORTHO05D008627 3.1e-68 262.7 205 62.9
HPP92_017841 Vanilla planifolia HOM05D006682 ORTHO05D008627 4.0e-68 262.3 201 66.7
Ca_20573_v3 Cicer arietinum L. HOM05D006682 ORTHO05D008627 1.5e-67 260.4 187 65.2
Ca_30508_v3 Cicer arietinum L. HOM05D006682 ORTHO05D008627 1.5e-67 260.4 187 65.2
PSO339G5979 Papaver somniferum HOM05D006682 ORTHO05D008627 2.2e-66 256.5 193 64.2
Manes.14G001136 Manihot esculenta HOM05D006682 ORTHO05D008627 2.9e-66 256.1 180 66.7
Zm00001eb022720 Zea mays HOM05D006682 ORTHO05D008627 3.8e-66 255.8 184 65.2
Migut.O00578 Erythranthe guttata HOM05D006682 ORTHO05D008627 4.9e-66 255.4 188 66.0
PSO384G2735 Papaver somniferum HOM05D006682 ORTHO05D008627 1.1e-65 254.2 193 63.7
Solyc09g005870.1 Solanum lycopersicum HOM05D006682 ORTHO05D008627 9.3e-65 251.1 216 61.1
SGA_v2.0_scaffold42G16114 Striga asiatica HOM05D006682 ORTHO05D008627 1.2e-64 250.8 205 61.0
Zm00001eb394030 Zea mays HOM05D006682 ORTHO05D008627 1.2e-64 250.8 196 62.2
Nitab4.5_0002026g0020 Nicotiana tabacum HOM05D006682 ORTHO05D008627 4.6e-64 248.8 213 62.0
Solyc03g033990.1 Solanum lycopersicum HOM05D006682 ORTHO05D008627 4.6e-64 248.8 214 60.7
Sopen03g006750 Solanum pennellii HOM05D006682 ORTHO05D008627 4.6e-64 248.8 214 60.7
Sopen09g001750 Solanum pennellii HOM05D006682 ORTHO05D008627 7.9e-64 248.1 216 60.6
PGSC0003DMG400023913 Solanum tuberosum HOM05D006682 ORTHO05D008627 1.8e-63 246.9 215 60.9
CAN.G350.11 Capsicum annuum HOM05D006682 ORTHO05D008627 2.3e-63 246.5 214 60.7
DCAR_014742 Daucus carota HOM05D006682 ORTHO05D008627 8.7e-63 244.6 172 68.0
SalBow5G1085 Salvia bowleyana HOM05D006682 ORTHO05D008627 8.7e-63 244.6 206 58.3
SalBow8G0417 Salvia bowleyana HOM05D006682 ORTHO05D008627 8.7e-63 244.6 206 58.3
PGSC0003DMG400009816 Solanum tuberosum HOM05D006682 ORTHO05D008627 8.7e-63 244.6 186 65.6
AUR62015492 Chenopodium quinoa HOM05D006682 ORTHO05D008627 1.8e-60 236.9 167 68.9
TPR.G35025 Trifolium pratense HOM05D006682 ORTHO05D008627 1.2e-59 234.2 227 54.6
SEGI_12993 Sequoiadendron giganteum HOM05D006682 ORTHO05D008627 1.5e-59 233.8 175 61.7
SGA_v2.0_scaffold4G02325 Striga asiatica HOM05D006682 ORTHO05D008627 2.6e-59 233.0 199 60.8
Lj3P268T21 Lonicera japonica HOM05D006682 ORTHO05D008627 7.7e-59 231.5 159 67.3
Psat7g244600 Pisum sativum HOM05D006682 ORTHO05D008627 1.1e-54 217.6 199 54.8
Pp3c14_20080 Physcomitrium patens HOM05D006682 ORTHO05D008627 4.8e-53 212.2 189 57.7
Mapoly0003s0021 Marchantia polymorpha HOM05D006682 ORTHO05D008627 8.2e-53 211.5 175 61.1
AUR62002207 Chenopodium quinoa HOM05D006072 ORTHO05D007363 3.1e-52 209.5 149 67.8
unitig_26.g10134 Utricularia gibba HOM05D006682 ORTHO05D008627 1.2e-48 197.6 205 52.2
HanXRQChr17g0534121 Helianthus annuus HOM05D006682 ORTHO05D008627 3.1e-44 183.0 122 66.4
Nitab4.5_0000492g0110 Nicotiana tabacum HOM05D006682 ORTHO05D008627 2.6e-30 136.7 98 71.4
GSVIVG01025303001 Vitis vinifera HOM05D006682 ORTHO05D008627 2.7e-24 116.7 141 47.5
Carub.0005s1814 Capsella rubella HOM05D006682 ORTHO05D008627 3.6e-24 116.3 81 64.2
EL10Ac6g14324 Beta vulgaris HOM05D006682 ORTHO05D007363 2.7e-19 100.1 71 63.4
CBR_g49935 Chara braunii HOM05D000019 ORTHO05D000048 3.3e-17 93.2 127 41.7
MBI13_g31542_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 4.2e-17 92.8 71 60.6
CBR_g49937 Chara braunii HOM05D000019 ORTHO05D000002 6.8e-15 85.5 79 46.8
Aqoxy4G00577 Aquilegia oxysepala HOM05D006682 ORTHO05D008627 4.1e-12 76.3 52 73.1
CDE05G2085 Ceratophyllum demersum HOM05D004838 ORTHO05D005373 2.3e-10 70.5 42 92.9
Peaxi162Scf00029g00296 Petunia axillaris HOM05D006682 ORTHO05D008627 1.6e-08 64.3 59 61.0
MBI13_g31543_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 3.1e-07 60.1 55 52.7


User provided reference genes

Program Settings