Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G1479 Ceratophyllum demersum HOM05D003442 ORTHO05D004005 3.6e-177 624.8 311 100.0
CDE02G3771 Ceratophyllum demersum HOM05D003442 ORTHO05D004005 1.3e-158 563.1 299 94.3
Manes.09G128600 Manihot esculenta HOM05D003442 ORTHO05D004005 2.7e-132 475.7 316 74.7
Nn7g37514 Nelumbo nucifera HOM05D003442 ORTHO05D004005 2.7e-132 475.7 316 75.0
MD01G1238500 Malus domestica HOM05D003442 ORTHO05D004005 3.0e-131 472.2 316 74.4
TAR636G2465 Trochodendron aralioides HOM05D003442 ORTHO05D004005 1.9e-130 469.5 312 75.0
MD07G1310400 Malus domestica HOM05D003442 ORTHO05D004005 4.3e-130 468.4 316 74.4
Thecc.05G221300 Theobroma cacao HOM05D003442 ORTHO05D004005 4.3e-130 468.4 316 73.7
Prupe.2G328400 Prunus persica HOM05D003442 ORTHO05D004005 5.6e-130 468.0 316 73.1
FvH4_7g34170 Fragaria vesca HOM05D003442 ORTHO05D004005 2.1e-129 466.1 316 74.1
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 6.2e-129 464.5 316 73.4
FAN03G3412 Fragaria x ananassa HOM05D003442 ORTHO05D004005 1.4e-128 463.4 316 73.1
Duzib177G0664 Durio zibethinus HOM05D003442 ORTHO05D004005 2.4e-128 462.6 316 73.4
CANSAT21G2378 Cannabis sativa HOM05D003442 ORTHO05D004005 3.1e-128 462.2 314 73.2
TWI60G0615 Tripterygium wilfordii HOM05D003442 ORTHO05D004005 3.1e-128 462.2 316 73.4
RcHm_v2.0_Chr1g0384521 Rosa chinensis HOM05D003442 ORTHO05D004005 4.0e-128 461.8 316 73.1
FAN01G2089 Fragaria x ananassa HOM05D003442 ORTHO05D004005 7.6e-127 457.6 327 71.6
Potri.013G078700 Populus trichocarpa HOM05D003442 ORTHO05D004005 7.6e-127 457.6 316 72.5
Gohir.A08G221656 Gossypium hirsutum HOM05D003442 ORTHO05D004005 1.0e-126 457.2 316 72.8
TWI32G0704 Tripterygium wilfordii HOM05D003442 ORTHO05D004005 1.0e-126 457.2 316 72.2
Manes.08G064200 Manihot esculenta HOM05D003442 ORTHO05D004005 1.3e-126 456.8 311 73.3
CsaV3_3G040000 Cucumis sativus L. HOM05D003442 ORTHO05D004005 2.2e-126 456.1 312 73.1
Potri.019G047800 Populus trichocarpa HOM05D003442 ORTHO05D004005 3.8e-126 455.3 316 72.8
Cpa.g.sc43.106 Carica papaya HOM05D003442 ORTHO05D004005 4.9e-126 454.9 316 71.8
CiPaw.05G214600 Carya illinoinensis HOM05D003442 ORTHO05D004005 4.9e-126 454.9 316 71.5
MELO3C009742.2 Cucumis melo HOM05D003442 ORTHO05D004005 4.9e-126 454.9 312 73.1
Gohir.D03G053800 Gossypium hirsutum HOM05D003442 ORTHO05D004005 4.9e-126 454.9 316 72.2
Sc16g0010680 Simmondsia chinensis HOM05D003442 ORTHO05D004005 4.9e-126 454.9 304 74.0
Actinidia31263 Actinidia chinensis HOM05D003442 ORTHO05D004005 8.4e-126 454.1 314 73.2
PSO017G5499 Papaver somniferum HOM05D003442 ORTHO05D004005 8.4e-126 454.1 316 71.8
PSO675G6803 Papaver somniferum HOM05D003442 ORTHO05D004005 8.4e-126 454.1 316 71.8
QL09p021203 Quercus lobata HOM05D003442 ORTHO05D004005 1.1e-125 453.8 338 68.3
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 2.5e-125 452.6 324 70.1
Gorai.003G056300 Gossypium raimondii HOM05D003442 ORTHO05D004005 4.2e-125 451.8 327 69.7
vmacro12087 Vaccinium macrocarpon HOM05D003442 ORTHO05D004005 7.1e-125 451.1 316 72.2
Gohir.D08G241000 Gossypium hirsutum HOM05D003442 ORTHO05D004005 9.3e-125 450.7 316 72.2
Ciclev10031531m.g Citrus clementina HOM05D003442 ORTHO05D004005 1.2e-124 450.3 311 71.1
CAN.G1610.2 Capsicum annuum HOM05D003442 ORTHO05D004005 1.6e-124 449.9 316 70.9
Nitab4.5_0003759g0020 Nicotiana tabacum HOM05D003442 ORTHO05D004005 2.7e-124 449.1 334 67.4
Sed0014541 Sechium edule HOM05D003442 ORTHO05D004005 4.6e-124 448.4 312 71.8
PGSC0003DMG401011206 Solanum tuberosum HOM05D003442 ORTHO05D004005 6.0e-124 448.0 312 71.5
Migut.F01837 Erythranthe guttata HOM05D003442 ORTHO05D004005 1.3e-123 446.8 312 72.8
Atru.chr12.1913 Acer truncatum HOM05D003442 ORTHO05D004005 3.0e-123 445.7 311 70.4
ATR0743G255 Amborella trichopoda HOM05D003442 ORTHO05D004005 5.1e-123 444.9 342 67.0
Hund07385 Selenicereus undatus HOM05D003442 ORTHO05D004005 6.7e-123 444.5 325 68.6
Lalb_Chr09g0333641 Lupinus albus HOM05D003442 ORTHO05D004005 8.7e-123 444.1 319 67.7
Sed0022579 Sechium edule HOM05D003442 ORTHO05D004005 1.1e-122 443.7 311 70.7
Lj4g0025932 Lotus japonicus HOM05D003442 ORTHO05D004005 4.3e-122 441.8 314 69.1
Eucgr.H02340 Eucalyptus grandis HOM05D003442 ORTHO05D004005 5.6e-122 441.4 311 71.7
Sopen07g002070 Solanum pennellii HOM05D003442 ORTHO05D004005 9.6e-122 440.7 312 70.5
CSS0045568 Camellia sinensis var. sinensis HOM05D003442 ORTHO05D004005 1.3e-121 440.3 316 70.6
MSTRG.8187 Avicennia marina HOM05D003442 ORTHO05D004005 2.1e-121 439.5 316 70.3
ClCG10G016340 Citrullus lanatus HOM05D003442 ORTHO05D004005 2.1e-121 439.5 306 71.6
PGR142G0137 Punica granatum HOM05D003442 ORTHO05D004005 2.1e-121 439.5 312 70.5
Glyma.16G142600 Glycine max HOM05D003442 ORTHO05D004005 2.8e-121 439.1 318 67.9
Nitab4.5_0002329g0200 Nicotiana tabacum HOM05D003442 ORTHO05D004005 2.8e-121 439.1 312 70.5
GSVIVG01024344001 Vitis vinifera HOM05D003442 ORTHO05D004005 2.8e-121 439.1 347 65.4
Gorai.004G256400 Gossypium raimondii HOM05D003442 ORTHO05D004005 3.7e-121 438.7 347 65.4
Solyc07g005940.4 Solanum lycopersicum HOM05D003442 ORTHO05D004005 6.2e-121 438.0 312 70.2
Lsat_1_v5_gn_6_25940 Lactuca sativa HOM05D003442 ORTHO05D004005 1.4e-120 436.8 314 70.7
Migut.F02084 Erythranthe guttata HOM05D003442 ORTHO05D004005 1.8e-120 436.4 312 70.2
Glyma.02G059800 Glycine max HOM05D003442 ORTHO05D004005 3.1e-120 435.6 318 67.9
Dinv17142 Davidia involucrata HOM05D003442 ORTHO05D004005 5.3e-120 434.9 295 74.2
Lj2g0002798 Lotus japonicus HOM05D003442 ORTHO05D004005 9.0e-120 434.1 307 69.7
A01p04260 Brassica napus HOM05D003442 ORTHO05D004005 2.6e-119 432.6 316 66.8
BraA01t00415Z Brassica rapa HOM05D003442 ORTHO05D004005 2.6e-119 432.6 316 66.8
Haze_00382 Corylus avellana HOM05D003442 ORTHO05D004005 3.4e-119 432.2 317 69.4
Lj2C606G3 Lonicera japonica HOM05D003442 ORTHO05D004005 7.6e-119 431.0 308 69.8
BcaNung03800 Brassica carinata HOM05D003442 ORTHO05D004005 1.0e-118 430.6 316 66.8
BolC1t00448H Brassica oleracea HOM05D003442 ORTHO05D004005 1.0e-118 430.6 316 66.8
Lalb_Chr05g0227421 Lupinus albus HOM05D003442 ORTHO05D004005 1.0e-118 430.6 320 66.2
Medtr8g078370 Medicago truncatula HOM05D003442 ORTHO05D004005 1.0e-118 430.6 352 61.9
Solyc12g009890.3 Solanum lycopersicum HOM05D003442 ORTHO05D004005 1.0e-118 430.6 317 68.1
HPP92_007347 Vanilla planifolia HOM05D003442 ORTHO05D004005 1.7e-118 429.9 318 69.2
THA.LOC104819563 Tarenaya hassleriana HOM05D003442 ORTHO05D004005 2.2e-118 429.5 316 67.4
AL5G22780 Arabidopsis lyrata HOM05D003442 ORTHO05D004005 4.9e-118 428.3 316 66.8
HanXRQChr13g0401211 Helianthus annuus HOM05D003442 ORTHO05D004005 6.5e-118 427.9 312 69.9
Thhalv10025183m.g Eutrema salsugineum HOM05D003442 ORTHO05D004005 1.1e-117 427.2 316 66.5
Zm00001eb323620 Zea mays HOM05D003442 ORTHO05D004005 1.4e-117 426.8 316 66.5
Sp7g31930 Schrenkiella parvula HOM05D003442 ORTHO05D004005 4.2e-117 425.2 316 66.8
Sopen12g004770 Solanum pennellii HOM05D003442 ORTHO05D004005 5.5e-117 424.9 317 67.2
PGSC0003DMG400007911 Solanum tuberosum HOM05D003442 ORTHO05D004005 7.1e-117 424.5 317 66.9
arahy.Tifrunner.gnm1.ann1.CZ7R53 Arachis hypogaea HOM05D003442 ORTHO05D004005 9.3e-117 424.1 303 69.3
BcaNung03365 Brassica carinata HOM05D003442 ORTHO05D004005 1.6e-116 423.3 316 65.8
Carub.0007s0621 Capsella rubella HOM05D003442 ORTHO05D004005 1.6e-116 423.3 316 65.8
THA.LOC104804387 Tarenaya hassleriana HOM05D003442 ORTHO05D004005 1.6e-116 423.3 316 66.5
Aqoxy6G03064 Aquilegia oxysepala HOM05D003442 ORTHO05D004005 2.1e-116 422.9 310 69.0
A03p62660 Brassica napus HOM05D003442 ORTHO05D004005 2.1e-116 422.9 316 66.1
C07p60210 Brassica napus HOM05D003442 ORTHO05D004005 2.1e-116 422.9 316 66.1
BolC7t46462H Brassica oleracea HOM05D003442 ORTHO05D004005 2.1e-116 422.9 316 66.1
C01p04650 Brassica napus HOM05D003442 ORTHO05D004005 2.7e-116 422.5 307 67.1
BcaB03g11847 Brassica carinata HOM05D003442 ORTHO05D004005 3.5e-116 422.2 316 66.1
Gohir.A02G127200 Gossypium hirsutum HOM05D003442 ORTHO05D004005 1.8e-115 419.9 295 71.9
SGA_v2.0_scaffold122G33217 Striga asiatica HOM05D003442 ORTHO05D004005 1.8e-115 419.9 303 69.0
Duzib106G0604 Durio zibethinus HOM05D003442 ORTHO05D004005 5.1e-115 418.3 295 70.8
Lj4A843G12 Lonicera japonica HOM05D003442 ORTHO05D004005 6.7e-115 417.9 340 64.4
MBI07_g36707_MAGBIO Magnolia biondii HOM05D003442 ORTHO05D004005 6.7e-115 417.9 303 68.6
ECA233G0769 Erigeron canadensis HOM05D003442 ORTHO05D004005 1.9e-114 416.4 316 68.4
Rhsim05G0022700 Rhododendron simsii HOM05D003442 ORTHO05D004005 1.9e-114 416.4 388 58.2
MBI07_g38305_MAGBIO Magnolia biondii HOM05D003442 ORTHO05D004005 3.3e-114 415.6 303 68.3
Aqoxy2G01953 Aquilegia oxysepala HOM05D003442 ORTHO05D004005 7.4e-114 414.5 329 65.3
BraA03t15336Z Brassica rapa HOM05D003442 ORTHO05D004005 9.7e-114 414.1 310 65.8
Nitab4.5_0006810g0020 Nicotiana tabacum HOM05D003442 ORTHO05D004005 1.6e-113 413.3 294 68.7
PGR042G1782 Punica granatum HOM05D003442 ORTHO05D004005 2.8e-113 412.5 311 68.2
Rhsim09G0020400 Rhododendron simsii HOM05D003442 ORTHO05D004005 2.8e-113 412.5 356 60.7
AT3G42050 Arabidopsis thaliana HOM05D003442 ORTHO05D004005 3.7e-113 412.1 316 65.2
Peaxi162Scf01313g00235 Petunia axillaris HOM05D003442 ORTHO05D004005 2.4e-112 409.5 310 67.1
unitig_61.g26274 Utricularia gibba HOM05D003442 ORTHO05D004005 1.2e-111 407.1 335 62.4
SEGI_25036 Sequoiadendron giganteum HOM05D003442 ORTHO05D004005 2.6e-111 406.0 317 64.4
EL10Ac4g10031 Beta vulgaris HOM05D003442 ORTHO05D004005 1.9e-109 399.8 317 64.7
Oeu007683.1 Olea europaea HOM05D003442 ORTHO05D004005 2.5e-109 399.4 336 62.8
Sc09g0001320 Simmondsia chinensis HOM05D003442 ORTHO05D004005 4.2e-109 398.7 285 70.2
AUR62000266 Chenopodium quinoa HOM05D003442 ORTHO05D004005 1.2e-108 397.1 332 62.3
AUR62006614 Chenopodium quinoa HOM05D003442 ORTHO05D004005 1.6e-108 396.7 332 62.3
DCAR_002085 Daucus carota HOM05D003442 ORTHO05D004005 3.0e-107 392.5 346 59.0
COL.COLO4_15183 Corchorus olitorius HOM05D003442 ORTHO05D004005 2.5e-106 389.4 360 58.1
SalBow3G0476 Salvia bowleyana HOM05D003442 ORTHO05D004005 2.5e-106 389.4 303 65.3
DCAR_023762 Daucus carota HOM05D003442 ORTHO05D004005 7.4e-106 387.9 340 58.8
PSO675G6576 Papaver somniferum HOM05D003442 ORTHO05D004005 3.1e-104 382.5 328 60.1
arahy.Tifrunner.gnm1.ann1.K5ZCN3 Arachis hypogaea HOM05D003442 ORTHO05D004005 5.9e-103 378.3 303 63.0
Aa31LG2G16640 Aethionema arabicum HOM05D003442 ORTHO05D004005 2.9e-102 375.9 396 51.0
SGA_v2.0_scaffold83G26364 Striga asiatica HOM05D003442 ORTHO05D004005 9.4e-101 370.9 243 75.7
BraA08t33665Z Brassica rapa HOM05D003442 ORTHO05D004005 1.6e-100 370.2 316 59.8
A08p17030 Brassica napus HOM05D003442 ORTHO05D004005 2.1e-100 369.8 316 59.8
Ca_22246_v3 Cicer arietinum L. HOM05D003442 ORTHO05D004005 6.7e-99 364.8 306 63.1
Hund21933 Selenicereus undatus HOM05D003442 ORTHO05D004005 4.4e-98 362.1 314 59.2
BcaC01g00920 Brassica carinata HOM05D003442 ORTHO05D004005 5.3e-96 355.1 316 58.5
Peaxi162Scf00062g00013 Petunia axillaris HOM05D003442 ORTHO05D004005 1.5e-93 347.1 312 58.0
Pp3c10_2890 Physcomitrium patens HOM05D003442 ORTHO05D004005 1.9e-93 346.7 315 56.5
Ah.04g159350 Amaranthus hybridus HOM05D003442 ORTHO05D004005 1.8e-91 340.1 300 59.7
Pp3c1_26980 Physcomitrium patens HOM05D003442 ORTHO05D004005 1.8e-91 340.1 314 54.5
C03p85940 Brassica napus HOM05D003442 ORTHO05D004005 2.3e-91 339.7 312 57.7
Actinidia07920 Actinidia chinensis HOM05D003442 ORTHO05D004005 6.7e-91 338.2 265 67.5
AagrBONN_evm.TU.Sc2ySwM_344.2700 Anthoceros agrestis HOM05D003442 ORTHO05D004005 5.7e-90 335.1 312 52.6
Mapoly0102s0002 Marchantia polymorpha HOM05D003442 ORTHO05D004005 3.7e-89 332.4 324 54.3
CANSAT56G1635 Cannabis sativa HOM05D003442 ORTHO05D004005 4.8e-89 332.0 314 54.5
Nitab4.5_0008310g0020 Nicotiana tabacum HOM05D003442 ORTHO05D004005 4.8e-89 332.0 323 55.7
Cc09_g04230 Coffea canephora HOM05D003442 ORTHO05D004005 1.2e-87 327.4 218 73.9
SMO361G0576 Selaginella moellendorffii HOM05D003442 ORTHO05D004005 1.2e-87 327.4 313 54.0
CANSAT35G0024 Cannabis sativa HOM05D003442 ORTHO05D004005 2.0e-87 326.6 314 54.5
VMungo0251G1146 Vigna mungo HOM05D003442 ORTHO05D004005 1.4e-83 313.9 217 71.0
Psat4g090760 Pisum sativum HOM05D003442 ORTHO05D004005 2.8e-81 306.2 208 70.2
SalBow1G1076 Salvia bowleyana HOM05D003442 ORTHO05D004005 9.1e-80 301.2 206 71.8
SalBow1G3564 Salvia bowleyana HOM05D003442 ORTHO05D004005 9.1e-80 301.2 206 71.8
CARHR242670 Cardamine hirsuta HOM05D003442 ORTHO05D004005 1.8e-75 287.0 227 63.0
Zm00001eb106630 Zea mays HOM05D003442 ORTHO05D004005 1.1e-72 277.7 228 61.8
SHI02588 Sapria himalayana HOM05D000002 ORTHO05D000001 1.2e-71 274.2 230 62.2
SGA_v2.0_scaffold340G49316 Striga asiatica HOM05D003442 ORTHO05D007315 6.1e-68 261.9 205 63.9
CBR_g3526 Chara braunii HOM05D003442 ORTHO05D004005 4.1e-64 249.2 300 44.0
TAR365G0691 Trochodendron aralioides HOM05D003442 ORTHO05D004005 3.9e-62 242.7 145 84.8
ATR0794G033 Amborella trichopoda HOM05D003442 ORTHO05D004005 2.5e-61 240.0 174 69.0
Oeu001224.1 Olea europaea HOM05D003442 ORTHO05D004005 2.8e-60 236.5 219 57.5
AagrBONN_evm.TU.Sc2ySwM_368.2763 Anthoceros agrestis HOM05D003442 ORTHO05D004005 2.3e-54 216.9 304 38.5
Cre01.g027800 Chlamydomonas reinhardtii HOM05D003442 ORTHO05D004005 1.1e-53 214.5 318 38.1
Oeu062031.1 Olea europaea HOM05D003442 ORTHO05D004005 1.2e-52 211.1 143 70.6
AL7G17200 Arabidopsis lyrata HOM05D003442 ORTHO05D004005 2.1e-52 210.3 230 50.0
CANSAT35G0263 Cannabis sativa HOM05D003442 ORTHO05D004005 1.7e-49 200.7 169 56.8
FAN08G1651 Fragaria x ananassa HOM05D003442 ORTHO05D004005 1.6e-47 194.1 153 65.4
FAN18G0534 Fragaria x ananassa HOM05D003442 ORTHO05D004005 6.0e-47 192.2 153 64.7
PRCOL_00001521 Prasinoderma coloniale HOM05D003442 ORTHO05D004005 9.2e-40 168.3 346 30.6
TAR365G0520 Trochodendron aralioides HOM05D003442 ORTHO05D004005 5.6e-37 159.1 100 77.0
Cc09_g04240 Coffea canephora HOM05D003442 ORTHO05D004005 7.3e-37 158.7 100 77.0
CARHR242660 Cardamine hirsuta HOM05D003442 ORTHO05D004005 5.2e-35 152.5 91 79.1
SalBow1G2470 Salvia bowleyana HOM05D003442 ORTHO05D004005 2.0e-34 150.6 98 72.4
SalBow1G3122 Salvia bowleyana HOM05D003442 ORTHO05D004005 2.0e-34 150.6 98 72.4
MCO09G349 Micromonas commoda HOM05D003442 ORTHO05D004005 2.6e-34 150.2 298 30.2
Sabra13G0073800 Salix brachista HOM05D003442 ORTHO05D004005 2.6e-34 150.2 100 73.0
arahy.Tifrunner.gnm1.ann1.T9GKNP Arachis hypogaea HOM05D003442 ORTHO05D004005 4.4e-34 149.4 100 71.0
Psat4g090720 Pisum sativum HOM05D003442 ORTHO05D004005 1.7e-33 147.5 100 71.0
Rhsim04G0133200 Rhododendron simsii HOM05D003442 ORTHO05D004005 6.4e-33 145.6 121 63.6
Phvul.003G250866 Phaseolus vulgaris HOM05D003442 ORTHO05D004005 5.4e-32 142.5 100 68.0
VMungo0251G0407 Vigna mungo HOM05D003442 ORTHO05D004005 7.1e-32 142.1 100 69.0
SGA_v2.0_scaffold340G49317 Striga asiatica HOM05D003442 ORTHO05D004005 1.6e-31 141.0 90 76.7
Os07g0549700 Oryza sativa ssp. japonica HOM05D003442 ORTHO05D004005 4.6e-31 139.4 100 66.0
AL5G22860 Arabidopsis lyrata HOM05D003442 ORTHO05D004005 7.6e-26 122.1 119 54.6
FvH4_5g39390 Fragaria vesca HOM05D003442 ORTHO05D004005 3.5e-23 113.2 74 74.3
MD01G1238200 Malus domestica HOM05D003442 ORTHO05D004005 1.3e-20 104.8 66 77.3
AL7G17190 Arabidopsis lyrata HOM05D003442 ORTHO05D004005 5.3e-19 99.4 63 74.6
CDE02G0117 Ceratophyllum demersum HOM05D003442 ORTHO05D004005 5.3e-19 99.4 115 53.0
ATR0794G079 Amborella trichopoda HOM05D003442 ORTHO05D004005 1.6e-15 87.8 71 63.4
Nitab4.5_0009666g0010 Nicotiana tabacum HOM05D008541 ORTHO05D010458 1.9e-13 80.9 55 69.1
SHI02591 Sapria himalayana HOM05D003442 ORTHO05D004005 3.7e-12 76.6 52 71.2
Pp3c2_19490 Physcomitrium patens HOM05D003442 ORTHO05D004005 3.4e-10 70.1 59 59.3
SHI02590 Sapria himalayana HOM05D003442 ORTHO05D004005 5.8e-10 69.3 48 66.7
Rhsim04G0133100 Rhododendron simsii HOM05D003442 ORTHO05D339879 2.5e-08 63.9 44 63.6
Phvul.003G250932 Phaseolus vulgaris HOM05D003442 ORTHO05D004005 5.5e-08 62.8 38 73.7


User provided reference genes

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