Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G1474 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 6.1e-194 680.6 341 100.0
ATR0564G196 Amborella trichopoda HOM05D001860 ORTHO05D004922 1.9e-86 323.6 315 53.7
TAR629G3174 Trochodendron aralioides HOM05D001860 ORTHO05D004922 4.2e-86 322.4 334 51.8
CDE06G2440 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 1.2e-85 320.9 300 53.0
MBI05_g10765_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004922 7.9e-85 318.2 330 52.7
Aqoxy5G04114 Aquilegia oxysepala HOM05D001860 ORTHO05D004922 4.3e-83 312.4 263 61.2
ECA246G1483 Erigeron canadensis HOM05D001860 ORTHO05D004922 5.7e-83 312.0 346 49.1
SEGI_35280 Sequoiadendron giganteum HOM05D001860 ORTHO05D004922 7.4e-83 311.6 294 54.4
Hma1.2p1_1079F.1_g254970 Hydrangea macrophylla HOM05D001860 ORTHO05D004922 1.3e-82 310.8 256 60.2
Ciclev10032245m.g Citrus clementina HOM05D001860 ORTHO05D004922 6.9e-81 305.1 271 55.4
Nn3g17288 Nelumbo nucifera HOM05D001860 ORTHO05D004922 2.0e-80 303.5 257 57.6
Atru.chr11.1760 Acer truncatum HOM05D001860 ORTHO05D004922 3.4e-80 302.8 258 58.1
PSO017G0798 Papaver somniferum HOM05D001860 ORTHO05D004922 4.5e-80 302.4 338 51.2
Lsat_1_v5_gn_3_52040 Lactuca sativa HOM05D001860 ORTHO05D004922 7.7e-80 301.6 261 58.2
TWI31G0055 Tripterygium wilfordii HOM05D001860 ORTHO05D004922 1.0e-79 301.2 261 55.2
CSS0022995 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.3e-79 300.8 257 54.5
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 2.2e-79 300.1 253 58.1
CiPaw.06G086900 Carya illinoinensis HOM05D001860 ORTHO05D004922 2.2e-79 300.1 258 56.6
PSO478G0757 Papaver somniferum HOM05D001860 ORTHO05D004922 2.2e-79 300.1 339 51.0
Lj3A1035T53 Lonicera japonica HOM05D001860 ORTHO05D004922 2.9e-79 299.7 222 64.4
HanXRQChr17g0545281 Helianthus annuus HOM05D001860 ORTHO05D004922 3.8e-79 299.3 262 59.2
GSVIVG01019959001 Vitis vinifera HOM05D001860 ORTHO05D004922 3.8e-79 299.3 257 56.8
Haze_11992 Corylus avellana HOM05D001860 ORTHO05D004922 5.0e-79 298.9 283 53.7
Rhsim12G0064600 Rhododendron simsii HOM05D001860 ORTHO05D004922 1.1e-78 297.7 272 54.8
QL03p068521 Quercus lobata HOM05D001860 ORTHO05D004922 2.5e-78 296.6 264 56.1
Solyc06g084030.3 Solanum lycopersicum HOM05D001860 ORTHO05D004922 7.2e-78 295.0 258 57.0
EL10Ac6g13236 Beta vulgaris HOM05D001860 ORTHO05D004922 1.2e-77 294.3 266 55.3
MSTRG.7790 Avicennia marina HOM05D001860 ORTHO05D004922 6.1e-77 292.0 264 57.2
SalBow2G3316 Salvia bowleyana HOM05D001860 ORTHO05D004922 7.9e-77 291.6 263 54.4
Sopen06g035410 Solanum pennellii HOM05D001860 ORTHO05D004922 7.9e-77 291.6 258 56.2
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 1.4e-76 290.8 285 52.6
Duzib248G0566 Durio zibethinus HOM05D001860 ORTHO05D004922 1.8e-76 290.4 256 56.2
Thecc.02G343500 Theobroma cacao HOM05D001860 ORTHO05D004922 3.9e-76 289.3 256 54.7
arahy.Tifrunner.gnm1.ann1.0UW6S5 Arachis hypogaea HOM05D001860 ORTHO05D004922 5.1e-76 288.9 263 54.4
Zm00001eb194590 Zea mays HOM05D001860 ORTHO05D004922 1.1e-75 287.7 257 55.3
CANSAT64G2732 Cannabis sativa HOM05D001860 ORTHO05D004922 2.6e-75 286.6 257 54.5
DCAR_026253 Daucus carota HOM05D001016 ORTHO05D003396 2.6e-75 286.6 266 54.5
Oeu028270.1 Olea europaea HOM05D001860 ORTHO05D004922 2.6e-75 286.6 269 56.1
QL03p068503 Quercus lobata HOM05D001860 ORTHO05D004922 3.3e-75 286.2 258 54.7
AUR62032811 Chenopodium quinoa HOM05D001860 ORTHO05D004922 7.4e-75 285.0 234 58.1
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 7.4e-75 285.0 261 52.9
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 7.4e-75 285.0 261 52.5
Ca_04822_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004922 9.7e-75 284.6 261 51.7
CAN.G771.16 Capsicum annuum HOM05D001860 ORTHO05D004922 2.2e-74 283.5 257 55.6
Glyma.02G109300 Glycine max HOM05D001860 ORTHO05D004922 2.2e-74 283.5 259 54.4
Manes.05G104100 Manihot esculenta HOM05D001860 ORTHO05D004922 2.8e-74 283.1 270 53.3
Hund25222 Selenicereus undatus HOM05D001860 ORTHO05D004922 2.8e-74 283.1 267 52.4
PGSC0003DMG400020063 Solanum tuberosum HOM05D001860 ORTHO05D004922 3.7e-74 282.7 245 56.7
SGA_v2.0_scaffold172G38956 Striga asiatica HOM05D001860 ORTHO05D004922 4.8e-74 282.3 263 53.2
RcHm_v2.0_Chr4g0439511 Rosa chinensis HOM05D001860 ORTHO05D004922 6.3e-74 282.0 261 52.1
QL03p068489 Quercus lobata HOM05D001860 ORTHO05D004922 1.1e-73 281.2 253 54.9
HPP92_016837 Vanilla planifolia HOM05D001860 ORTHO05D004922 1.4e-73 280.8 273 51.3
Os02g0744100 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004922 1.8e-73 280.4 277 53.1
Potri.008G088500 Populus trichocarpa HOM05D001860 ORTHO05D004922 2.4e-73 280.0 257 52.5
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 3.1e-73 279.6 259 53.3
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 3.1e-73 279.6 261 52.5
Lj2g0002858 Lotus japonicus HOM05D001860 ORTHO05D004922 5.3e-73 278.9 259 52.1
Sed0020595 Sechium edule HOM05D001860 ORTHO05D004922 9.1e-73 278.1 258 53.9
Migut.L01273 Erythranthe guttata HOM05D001860 ORTHO05D004922 1.2e-72 277.7 222 60.4
Phvul.002G083300 Phaseolus vulgaris HOM05D001860 ORTHO05D004922 1.2e-72 277.7 260 53.1
Peaxi162Scf01530g00038 Petunia axillaris HOM05D001860 ORTHO05D004922 1.5e-72 277.3 222 59.9
Eucgr.B03211 Eucalyptus grandis HOM05D001860 ORTHO05D004922 2.0e-72 276.9 257 53.3
vmacro01268 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 2.0e-72 276.9 296 49.3
arahy.Tifrunner.gnm1.ann1.F2WL4X Arachis hypogaea HOM05D001860 ORTHO05D004922 2.6e-72 276.6 291 48.8
Medtr5g041780 Medicago truncatula HOM05D001860 ORTHO05D004922 4.5e-72 275.8 263 51.0
arahy.Tifrunner.gnm1.ann1.WF3EDY Arachis hypogaea HOM05D001860 ORTHO05D004922 1.0e-71 274.6 291 48.5
Nitab4.5_0006433g0040 Nicotiana tabacum HOM05D001860 ORTHO05D004922 2.2e-71 273.5 219 59.4
Psat2g116760 Pisum sativum HOM05D001860 ORTHO05D004922 2.2e-71 273.5 261 51.0
MELO3C012111.2 Cucumis melo HOM05D001860 ORTHO05D004922 2.9e-71 273.1 260 52.7
TPR.G36138 Trifolium pratense HOM05D001860 ORTHO05D004922 3.8e-71 272.7 218 57.8
Nitab4.5_0001044g0130 Nicotiana tabacum HOM05D001860 ORTHO05D004922 5.0e-71 272.3 219 58.9
Cc11_g12800 Coffea canephora HOM05D001860 ORTHO05D004922 1.9e-70 270.4 263 52.5
ClCG05G024130 Citrullus lanatus HOM05D001860 ORTHO05D004922 5.5e-70 268.9 252 54.4
CsaV3_5G032890 Cucumis sativus L. HOM05D001860 ORTHO05D004922 5.5e-70 268.9 258 53.1
CsaV3_5G032900 Cucumis sativus L. HOM05D001860 ORTHO05D004922 7.2e-70 268.5 261 52.9
MD16G1070300 Malus domestica HOM05D001860 ORTHO05D004922 1.6e-69 267.3 282 48.9
FvH4_4g31120 Fragaria vesca HOM05D001860 ORTHO05D004922 2.1e-69 266.9 262 51.1
unitig_26.g10298 Utricularia gibba HOM05D001860 ORTHO05D004922 6.1e-69 265.4 284 50.0
vmacro01267 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 1.1e-67 261.2 337 43.9
COL.COLO4_22943 Corchorus olitorius HOM05D001860 ORTHO05D004922 3.3e-67 259.6 276 48.2
AagrBONN_evm.TU.Sc2ySwM_368.914 Anthoceros agrestis HOM05D001860 ORTHO05D004922 6.3e-66 255.4 259 51.0
THA.LOC104822044 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 1.4e-65 254.2 294 47.3
Sp5g24630 Schrenkiella parvula HOM05D001860 ORTHO05D004922 3.1e-65 253.1 257 48.6
SMO239G0167 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 1.2e-64 251.1 275 50.5
AT1G69523 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 2.0e-64 250.4 260 49.2
CARHR062460 Cardamine hirsuta HOM05D001860 ORTHO05D004922 2.0e-64 250.4 232 53.0
BraA07t30786Z Brassica rapa HOM05D001860 ORTHO05D004922 3.5e-64 249.6 271 48.7
Lalb_Chr04g0255941 Lupinus albus HOM05D001860 ORTHO05D004922 5.9e-64 248.8 328 43.3
Aa31LG4G11250 Aethionema arabicum HOM05D001860 ORTHO05D004922 7.7e-64 248.4 258 48.1
THA.LOC104822184 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 5.0e-63 245.7 221 53.8
Pp3c24_6910 Physcomitrium patens HOM05D001860 ORTHO05D004922 1.1e-62 244.6 220 54.5
Thhalv10018913m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 1.5e-62 244.2 219 54.3
A07p35850 Brassica napus HOM05D001860 ORTHO05D004922 1.9e-62 243.8 259 48.3
C06p40330 Brassica napus HOM05D001860 ORTHO05D004922 1.9e-62 243.8 259 48.6
BcaB03g14715 Brassica carinata HOM05D001860 ORTHO05D004922 2.5e-62 243.4 226 50.0
Carub.0002s1616 Capsella rubella HOM05D001860 ORTHO05D004922 4.2e-62 242.7 228 52.6
BcaB03g15478 Brassica carinata HOM05D001860 ORTHO05D004922 7.2e-62 241.9 216 54.6
MELO3C012110.2 Cucumis melo HOM05D001860 ORTHO05D004922 7.2e-62 241.9 288 45.5
A07p35830 Brassica napus HOM05D001860 ORTHO05D004922 1.6e-61 240.7 250 47.2
BraA07t31169Z Brassica rapa HOM05D001860 ORTHO05D004922 1.6e-61 240.7 250 47.2
Mapoly0002s0191 Marchantia polymorpha HOM05D001860 ORTHO05D004922 1.6e-61 240.7 263 46.4
A07p35840 Brassica napus HOM05D001860 ORTHO05D004922 3.6e-61 239.6 250 47.2
Carub.0002s1617 Capsella rubella HOM05D001860 ORTHO05D004922 3.6e-61 239.6 260 46.2
BraA07t31170Z Brassica rapa HOM05D001860 ORTHO05D004922 6.1e-61 238.8 260 45.0
BcaC08g46392 Brassica carinata HOM05D001860 ORTHO05D004922 8.0e-61 238.4 254 48.4
BolC6t39396H Brassica oleracea HOM05D001860 ORTHO05D004922 8.0e-61 238.4 227 49.3
BolC6t39398H Brassica oleracea HOM05D001860 ORTHO05D004922 8.0e-61 238.4 227 49.3
Sabra08G0066100 Salix brachista HOM05D001860 ORTHO05D004922 8.0e-61 238.4 338 39.6
THA.LOC104822045 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 8.0e-61 238.4 229 52.4
BcaB03g14720 Brassica carinata HOM05D001860 ORTHO05D004922 1.0e-60 238.0 259 49.0
C06p40340 Brassica napus HOM05D001860 ORTHO05D004922 3.0e-60 236.5 227 48.9
Sp5g24640 Schrenkiella parvula HOM05D001860 ORTHO05D004922 3.0e-60 236.5 216 53.7
BolC6t39399H Brassica oleracea HOM05D001860 ORTHO05D004922 4.0e-60 236.1 257 47.5
AL2G28650 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 8.8e-60 235.0 232 50.0
FAN17G3114 Fragaria x ananassa HOM05D001860 ORTHO05D004922 2.6e-59 233.4 258 46.1
AT1G69526 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 5.7e-59 232.3 259 45.6
BraA07t31171Z Brassica rapa HOM05D001860 ORTHO05D004922 6.3e-58 228.8 251 47.4
Carub.0002s1615 Capsella rubella HOM05D001860 ORTHO05D004922 1.4e-57 227.6 223 49.3
BcaC08g46390 Brassica carinata HOM05D001860 ORTHO05D004922 1.7e-55 220.7 198 50.0
PGR102G3336 Punica granatum HOM05D001860 ORTHO05D004922 2.2e-55 220.3 176 59.7
CARHR062480 Cardamine hirsuta HOM05D001860 ORTHO05D004922 6.5e-55 218.8 200 54.0
Carub.0002s1614 Capsella rubella HOM05D001860 ORTHO05D004922 1.9e-54 217.2 217 51.6
Prupe.1G276900 Prunus persica HOM05D001860 ORTHO05D004922 1.9e-54 217.2 198 53.5
AL2G28640 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 1.2e-53 214.5 217 50.2
Gohir.A13G076700 Gossypium hirsutum HOM05D001860 ORTHO05D004922 4.7e-53 212.6 196 53.1
C06p40360 Brassica napus HOM05D001860 ORTHO05D004922 1.8e-52 210.7 194 49.0
Gohir.D13G076400 Gossypium hirsutum HOM05D001860 ORTHO05D004922 1.8e-52 210.7 196 51.5
A07p35820 Brassica napus HOM05D001482 ORTHO05D001499 2.0e-51 207.2 290 41.4
CARHR062450 Cardamine hirsuta HOM05D001860 ORTHO05D004922 5.7e-51 205.7 219 49.3
BcaC08g46388 Brassica carinata HOM05D001860 ORTHO05D004922 7.5e-51 205.3 208 49.5
BraA07t31168Z Brassica rapa HOM05D001482 ORTHO05D001499 9.8e-51 204.9 290 40.7
BolC6t39394H Brassica oleracea HOM05D001482 ORTHO05D001499 2.2e-50 203.8 208 50.0
Thhalv10019583m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 3.7e-50 203.0 208 51.0
BcaB03g14714 Brassica carinata HOM05D001860 ORTHO05D004922 6.3e-50 202.2 208 50.0
AT1G69520 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 8.3e-50 201.8 219 48.9
Sp5g24610 Schrenkiella parvula HOM05D001860 ORTHO05D004922 5.0e-47 192.6 219 46.6
C06p40380 Brassica napus HOM05D001482 ORTHO05D001499 1.0e-44 184.9 226 44.7
Ah.02g129590 Amaranthus hybridus HOM05D001860 ORTHO05D004922 2.3e-44 183.7 263 39.2
SMO137G0248 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 1.3e-42 177.9 195 46.2
CSS0019961 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 4.9e-42 176.0 136 56.6
Sc11g0002060 Simmondsia chinensis HOM05D001860 ORTHO05D004922 1.8e-41 174.1 174 51.7
Aa31LG4G11270 Aethionema arabicum HOM05D001860 ORTHO05D004922 5.9e-40 169.1 236 43.2
AUR62005816 Chenopodium quinoa HOM05D001860 ORTHO05D004922 1.0e-39 168.3 136 58.1
Oeu028272.1 Olea europaea HOM05D001860 ORTHO05D004922 9.5e-38 161.8 125 64.0
Sp5g24620 Schrenkiella parvula HOM05D001860 ORTHO05D004922 3.7e-34 149.8 143 53.1
BcaC08g45887 Brassica carinata HOM05D001860 ORTHO05D004922 5.9e-32 142.5 131 56.5
CBR_g41443 Chara braunii HOM05D001860 ORTHO05D004922 1.0e-31 141.7 269 34.6
A07p31570 Brassica napus HOM05D001860 ORTHO05D004922 1.3e-31 141.4 122 59.0
C06p40370 Brassica napus HOM05D001860 ORTHO05D004922 2.3e-31 140.6 120 55.8
Dinv16666 Davidia involucrata HOM05D001860 ORTHO05D004922 3.9e-31 139.8 140 49.3
C06p36870 Brassica napus HOM05D000005 ORTHO05D042562 2.5e-30 137.1 120 59.2
BcaB03g14717 Brassica carinata HOM05D001860 ORTHO05D004922 3.3e-30 136.7 139 43.9
BolC6t38800H Brassica oleracea HOM05D000005 ORTHO05D042562 5.6e-30 136.0 142 50.7
MCO03G556 Micromonas commoda HOM05D001860 ORTHO05D004922 9.5e-30 135.2 227 37.4
PRCOL_00000783 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 8.0e-29 132.1 173 41.6
MCO09G753 Micromonas commoda HOM05D001860 ORTHO05D004922 4.0e-28 129.8 148 43.9
Cpa.g.sc350.4 Carica papaya HOM05D001860 ORTHO05D004922 1.0e-23 115.2 136 41.9
Cre07.g342550 Chlamydomonas reinhardtii HOM05D001860 ORTHO05D004922 2.5e-22 110.5 184 37.5
Thhalv10019188m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 4.3e-22 109.8 167 36.5
PRCOL_00003589 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 7.3e-22 109.0 175 35.4
CSS0034144 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 3.6e-21 106.7 84 58.3
CSS0016207 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 7.5e-19 99.0 77 57.1
VMungo1383G2064 Vigna mungo HOM05D001860 ORTHO05D004922 8.6e-15 85.5 86 46.5
Thecc.01G276100 Theobroma cacao HOM05D001860 ORTHO05D004922 3.6e-13 80.1 83 39.8
CBR_g34579 Chara braunii HOM05D001860 ORTHO05D019626 6.2e-13 79.3 184 32.6
arahy.Tifrunner.gnm1.ann1.661SM0 Arachis hypogaea HOM05D001860 ORTHO05D004922 3.1e-12 77.0 85 48.2
Actinidia19883 Actinidia chinensis HOM05D001860 ORTHO05D004922 4.4e-11 73.2 88 42.0
AagrBONN_evm.TU.Sc2ySwM_368.1265 Anthoceros agrestis HOM05D019459 ORTHO05D019626 3.8e-10 70.1 190 30.0
Zm00001eb254460 Zea mays HOM05D001860 ORTHO05D004922 3.8e-10 70.1 72 52.8
CDE08G0834 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 1.1e-09 68.6 54 59.3
MCO03G203 Micromonas commoda HOM05D023757 ORTHO05D024904 7.1e-09 65.9 165 30.9
Cfa024139 Carpinus fangiana HOM05D001860 ORTHO05D004922 1.5e-06 58.2 188 26.1
AagrBONN_evm.TU.Sc2ySwM_228.1651 Anthoceros agrestis HOM05D001535 ORTHO05D003710 5.6e-06 56.2 151 29.8
Hma1.2p1_1598F.1_g293000 Hydrangea macrophylla HOM05D001535 ORTHO05D003710 9.6e-06 55.5 131 31.3


User provided reference genes

Program Settings