Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G1470 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 8.3e-67 256.9 130 100.0
MBI17_g17502_MAGBIO Magnolia biondii HOM05D004553 ORTHO05D005426 1.4e-50 203.0 127 79.5
Migut.D00406 Erythranthe guttata HOM05D004553 ORTHO05D005426 1.2e-49 199.9 127 78.7
Nn3g19599 Nelumbo nucifera HOM05D004553 ORTHO05D005426 2.0e-49 199.1 128 79.7
PGR044G0761 Punica granatum HOM05D004553 ORTHO05D005426 2.7e-49 198.7 127 78.7
HanXRQChr10g0281111 Helianthus annuus HOM05D004553 ORTHO05D005426 1.0e-48 196.8 127 77.2
Ciclev10021217m.g Citrus clementina HOM05D004553 ORTHO05D005426 1.7e-48 196.1 126 78.6
Hma1.2p1_0273F.1_g109950 Hydrangea macrophylla HOM05D004553 ORTHO05D005426 1.7e-48 196.1 127 79.5
Dinv34597 Davidia involucrata HOM05D004553 ORTHO05D005426 2.3e-48 195.7 127 78.7
MD05G1201100 Malus domestica HOM05D004553 ORTHO05D005426 3.9e-48 194.9 126 77.8
Os12g0626100 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 3.9e-48 194.9 127 78.0
Potri.005G221700 Populus trichocarpa HOM05D004553 ORTHO05D005426 5.0e-48 194.5 126 75.4
vmacro03822 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 5.0e-48 194.5 127 77.2
Sabra02G0033000 Salix brachista HOM05D004553 ORTHO05D005426 6.6e-48 194.1 126 74.6
Actinidia21228 Actinidia chinensis HOM05D004553 ORTHO05D005426 8.6e-48 193.7 127 77.2
Lsat_1_v5_gn_9_9101 Lactuca sativa HOM05D004553 ORTHO05D005426 1.5e-47 193.0 127 75.6
Ah.02g111810 Amaranthus hybridus HOM05D004553 ORTHO05D005426 1.9e-47 192.6 126 77.0
PSO675G7515 Papaver somniferum HOM05D004553 ORTHO05D005426 2.5e-47 192.2 127 76.4
Actinidia23392 Actinidia chinensis HOM05D004553 ORTHO05D005426 3.3e-47 191.8 127 76.4
Cfa002394 Carpinus fangiana HOM05D004553 ORTHO05D005426 4.3e-47 191.4 126 73.8
AUR62011903 Chenopodium quinoa HOM05D004553 ORTHO05D005426 4.3e-47 191.4 126 77.0
Haze_24589 Corylus avellana HOM05D004553 ORTHO05D005426 4.3e-47 191.4 126 73.8
Haze_24593 Corylus avellana HOM05D004553 ORTHO05D005426 4.3e-47 191.4 126 73.8
ECA247G2484 Erigeron canadensis HOM05D004553 ORTHO05D005426 4.3e-47 191.4 127 74.8
Zm00001eb259150 Zea mays HOM05D004553 ORTHO05D005426 4.3e-47 191.4 126 76.2
TPR.G18834 Trifolium pratense HOM05D004553 ORTHO05D005426 5.6e-47 191.0 126 74.6
TPR.G5760 Trifolium pratense HOM05D004553 ORTHO05D005426 5.6e-47 191.0 126 75.4
Nitab4.5_0009451g0050 Nicotiana tabacum HOM05D004553 ORTHO05D005426 7.3e-47 190.7 126 76.2
Os12g0163300 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 7.3e-47 190.7 126 76.2
Potri.002G041400 Populus trichocarpa HOM05D004553 ORTHO05D005426 7.3e-47 190.7 126 73.8
AUR62024744 Chenopodium quinoa HOM05D004553 ORTHO05D005426 9.5e-47 190.3 126 76.2
Gohir.A07G211100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 9.5e-47 190.3 126 75.4
Gohir.D07G217100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 9.5e-47 190.3 126 75.4
Gorai.001G251500 Gossypium raimondii HOM05D004553 ORTHO05D005426 9.5e-47 190.3 126 75.4
MD10G1187900 Malus domestica HOM05D004553 ORTHO05D005426 1.2e-46 189.9 126 75.4
Sed0015397 Sechium edule HOM05D004553 ORTHO05D005426 1.2e-46 189.9 127 74.8
Sed0016387 Sechium edule HOM05D004553 ORTHO05D005426 1.2e-46 189.9 127 74.0
Thecc.01G262600 Theobroma cacao HOM05D004553 ORTHO05D005426 1.2e-46 189.9 126 74.6
Nitab4.5_0000500g0290 Nicotiana tabacum HOM05D004553 ORTHO05D005426 2.1e-46 189.1 126 76.2
ClCG09G008080 Citrullus lanatus HOM05D004553 ORTHO05D005426 2.8e-46 188.7 127 74.0
MELO3C012740.2 Cucumis melo HOM05D004553 ORTHO05D005426 2.8e-46 188.7 127 74.0
CsaV3_7G026990 Cucumis sativus L. HOM05D004553 ORTHO05D005426 3.6e-46 188.3 127 74.0
Prupe.8G227700 Prunus persica HOM05D004553 ORTHO05D005426 3.6e-46 188.3 126 75.4
Medtr7g096510 Medicago truncatula HOM05D004553 ORTHO05D005426 6.1e-46 187.6 126 72.2
CAN.G572.12 Capsicum annuum HOM05D004553 ORTHO05D005426 1.0e-45 186.8 126 76.2
Cc03_g10870 Coffea canephora HOM05D004553 ORTHO05D005426 1.0e-45 186.8 127 73.2
Solyc08g077830.1 Solanum lycopersicum HOM05D004553 ORTHO05D005426 1.0e-45 186.8 126 76.2
Sopen08g026340 Solanum pennellii HOM05D004553 ORTHO05D005426 1.0e-45 186.8 126 76.2
HPP92_007745 Vanilla planifolia HOM05D004553 ORTHO05D005426 1.0e-45 186.8 127 73.2
DCAR_012530 Daucus carota HOM05D004553 ORTHO05D005426 1.4e-45 186.4 127 72.4
SGA_v2.0_scaffold31G12652 Striga asiatica HOM05D004553 ORTHO05D005426 1.4e-45 186.4 127 74.0
Peaxi162Scf00324g00032 Petunia axillaris HOM05D004553 ORTHO05D005426 1.8e-45 186.0 127 74.0
Nitab4.5_0001839g0070 Nicotiana tabacum HOM05D004553 ORTHO05D005426 2.3e-45 185.7 126 75.4
COL.COLO4_05596 Corchorus olitorius HOM05D004553 ORTHO05D005426 4.0e-45 184.9 119 78.2
PGSC0003DMG400026216 Solanum tuberosum HOM05D004553 ORTHO05D005426 4.0e-45 184.9 126 74.6
TAR365G0062 Trochodendron aralioides HOM05D004553 ORTHO05D005426 4.0e-45 184.9 119 79.0
DCAR_009311 Daucus carota HOM05D004553 ORTHO05D005426 1.7e-43 179.5 119 75.6
Lj1A269G34 Lonicera japonica HOM05D004553 ORTHO05D005426 1.7e-43 179.5 119 76.5
Psat0s2087g0120 Pisum sativum HOM05D004553 ORTHO05D005426 1.7e-43 179.5 126 72.2
Atru.chr5.1915 Acer truncatum HOM05D004553 ORTHO05D005426 1.9e-42 176.0 127 70.1
ATR0794G102 Amborella trichopoda HOM05D004553 ORTHO05D005426 2.4e-42 175.6 127 70.1
MSTRG.3646 Avicennia marina HOM05D004553 ORTHO05D005426 2.4e-42 175.6 129 69.0
GSVIVG01028297001 Vitis vinifera HOM05D004553 ORTHO05D005426 3.2e-42 175.3 127 70.9
Rhsim01G0266400 Rhododendron simsii HOM05D004553 ORTHO05D005426 9.2e-42 173.7 119 76.5
arahy.Tifrunner.gnm1.ann1.9FA7V6 Arachis hypogaea HOM05D004553 ORTHO05D005426 3.5e-41 171.8 126 69.0
Eucgr.K03287 Eucalyptus grandis HOM05D004553 ORTHO05D005426 4.6e-41 171.4 127 68.5
Aqoxy5G00280 Aquilegia oxysepala HOM05D004553 ORTHO05D005426 7.8e-41 170.6 127 70.1
PSO541G5588 Papaver somniferum HOM05D004553 ORTHO05D005426 2.3e-40 169.1 127 68.5
arahy.Tifrunner.gnm1.ann1.1I5KFR Arachis hypogaea HOM05D004553 ORTHO05D005426 1.9e-39 166.0 126 66.7
Glyma.03G161100 Glycine max HOM05D004553 ORTHO05D005426 3.3e-39 165.2 126 66.7
Hund09587 Selenicereus undatus HOM05D004553 ORTHO05D005426 4.3e-39 164.9 126 67.5
CANSAT21G2336 Cannabis sativa HOM05D004553 ORTHO05D005426 5.6e-39 164.5 126 67.5
TWI18G0975 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 1.2e-38 163.3 113 73.5
arahy.Tifrunner.gnm1.ann1.59X69N Arachis hypogaea HOM05D004553 ORTHO05D005426 1.6e-38 162.9 126 66.7
arahy.Tifrunner.gnm1.ann1.6P10V3 Arachis hypogaea HOM05D004553 ORTHO05D005426 2.8e-38 162.2 126 65.9
Manes.05G087500 Manihot esculenta HOM05D004553 ORTHO05D005426 1.8e-37 159.5 126 66.7
Psat3g059120 Pisum sativum HOM05D004553 ORTHO05D005426 1.8e-37 159.5 126 65.1
EL10Ac5g10427 Beta vulgaris HOM05D004553 ORTHO05D005426 2.3e-37 159.1 126 66.7
Oeu025823.1 Olea europaea HOM05D004553 ORTHO05D005426 5.2e-37 157.9 127 63.8
Duzib138G1605 Durio zibethinus HOM05D004553 ORTHO05D005426 6.8e-37 157.5 126 63.5
Phvul.001G159000 Phaseolus vulgaris HOM05D004553 ORTHO05D005426 8.9e-37 157.1 126 64.3
Aa31LG10G12900 Aethionema arabicum HOM05D004553 ORTHO05D005426 1.2e-36 156.8 126 63.5
Ca_02526_v3 Cicer arietinum L. HOM05D004553 ORTHO05D005426 2.0e-36 156.0 126 62.7
SalBow6G2244 Salvia bowleyana HOM05D004553 ORTHO05D005426 2.6e-36 155.6 117 67.5
Lalb_Chr20g0107851 Lupinus albus HOM05D004553 ORTHO05D005426 4.4e-36 154.8 126 63.5
VMungo1383G1775 Vigna mungo HOM05D004553 ORTHO05D005426 5.8e-36 154.5 121 66.9
FAN15G2654 Fragaria x ananassa HOM05D004553 ORTHO05D005426 2.2e-35 152.5 127 63.8
PSO832G2284 Papaver somniferum HOM05D004553 ORTHO05D005426 3.7e-35 151.8 126 63.5
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 6.4e-35 151.0 119 68.1
CiPaw.03G261300 Carya illinoinensis HOM05D004553 ORTHO05D005426 8.3e-35 150.6 126 63.5
Psat0s2295g0120 Pisum sativum HOM05D004553 ORTHO05D005426 8.3e-35 150.6 125 63.2
BcaC07g40188 Brassica carinata HOM05D004553 ORTHO05D005426 1.4e-34 149.8 126 59.5
FAN20G1146 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.4e-34 149.8 127 63.0
QL09p037745 Quercus lobata HOM05D004553 ORTHO05D005426 1.4e-34 149.8 126 61.1
AT3G58180 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 3.2e-34 148.7 126 60.3
RcHm_v2.0_Chr6g0288871 Rosa chinensis HOM05D004553 ORTHO05D005426 3.2e-34 148.7 127 63.0
TAR636G3311 Trochodendron aralioides HOM05D004553 ORTHO05D005426 3.2e-34 148.7 119 66.4
Thhalv10006107m.g Eutrema salsugineum HOM05D004553 ORTHO05D005426 4.1e-34 148.3 126 61.1
BcaB02g07544 Brassica carinata HOM05D004553 ORTHO05D005426 5.4e-34 147.9 126 61.1
CARHR168560 Cardamine hirsuta HOM05D004553 ORTHO05D005426 5.4e-34 147.9 126 60.3
Carub.0005s2503 Capsella rubella HOM05D004553 ORTHO05D005426 1.2e-33 146.7 126 59.5
BcaC07g40268 Brassica carinata HOM05D004553 ORTHO05D005426 1.6e-33 146.4 126 60.3
C08p33760 Brassica napus HOM05D004553 ORTHO05D005426 1.6e-33 146.4 126 60.3
BolC8t50975H Brassica oleracea HOM05D004553 ORTHO05D005426 1.6e-33 146.4 126 60.3
Sp5g04540 Schrenkiella parvula HOM05D004553 ORTHO05D005426 1.6e-33 146.4 126 60.3
FvH4_2g22010 Fragaria vesca HOM05D004553 ORTHO05D005426 2.1e-33 146.0 127 62.2
FAN24G1077 Fragaria x ananassa HOM05D004553 ORTHO05D005426 2.1e-33 146.0 127 62.2
A09p50940 Brassica napus HOM05D004553 ORTHO05D005426 3.5e-33 145.2 126 59.5
BraA09t40540Z Brassica rapa HOM05D004553 ORTHO05D005426 3.5e-33 145.2 126 59.5
Cpa.g.sc50.47 Carica papaya HOM05D004553 ORTHO05D005426 3.5e-33 145.2 126 61.1
AL5G39880 Arabidopsis lyrata HOM05D004553 ORTHO05D005426 4.6e-33 144.8 126 59.5
TWI12G0019 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 7.8e-33 144.1 119 63.9
BcaC08g44904 Brassica carinata HOM05D004553 ORTHO05D005426 1.7e-32 142.9 126 57.9
FAN27G3448 Fragaria x ananassa HOM05D004553 ORTHO05D005426 6.6e-32 141.0 119 63.9
Psat0s2088g0080 Pisum sativum HOM05D004553 ORTHO05D005426 3.3e-31 138.7 94 75.5
THA.LOC104802841 Tarenaya hassleriana HOM05D004553 ORTHO05D005426 4.3e-31 138.3 126 57.1
AagrBONN_evm.TU.Sc2ySwM_228.3863 Anthoceros agrestis HOM05D004553 ORTHO05D005426 9.5e-31 137.1 126 58.7
AagrBONN_evm.TU.Sc2ySwM_117.1472 Anthoceros agrestis HOM05D004553 ORTHO05D005426 1.2e-30 136.7 126 57.9
BraA07t30048Z Brassica rapa HOM05D004553 ORTHO05D005426 3.6e-30 135.2 119 58.8
A07p23970 Brassica napus HOM05D004553 ORTHO05D005426 4.7e-30 134.8 119 59.7
C06p25240 Brassica napus HOM05D004553 ORTHO05D005426 4.7e-30 134.8 119 58.8
BolC6t37683H Brassica oleracea HOM05D004553 ORTHO05D005426 4.7e-30 134.8 119 58.8
Mapoly0065s0014 Marchantia polymorpha HOM05D004553 ORTHO05D005426 1.1e-29 133.7 125 52.8
unitig_8.g3887 Utricularia gibba HOM05D004553 ORTHO05D005426 1.1e-29 133.7 126 56.3
vmacro02641 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 4.6e-25 118.2 108 54.6
vmacro06125 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 4.6e-25 118.2 96 63.5
AT3G62530 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 1.7e-24 116.3 115 52.2
Pp3c11_17490 Physcomitrium patens HOM05D004553 ORTHO05D005426 1.7e-24 116.3 119 51.3
Haze_27369 Corylus avellana HOM05D004553 ORTHO05D005426 4.3e-23 111.7 123 47.2
Cre10.g435550 Chlamydomonas reinhardtii HOM05D004553 ORTHO05D005426 9.5e-23 110.5 120 50.8
MCO15G119 Micromonas commoda HOM05D004553 ORTHO05D005426 1.4e-21 106.7 120 50.0
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 1.4e-21 106.7 115 49.6
SMO304G0012 Selaginella moellendorffii HOM05D004553 ORTHO05D005426 3.1e-21 105.5 123 50.4
Nn1g02691 Nelumbo nucifera HOM05D004553 ORTHO05D005426 2.6e-20 102.4 158 40.5
CBR_g46193 Chara braunii HOM05D004553 ORTHO05D005426 1.2e-17 93.6 121 42.1
Sc05g0000780 Simmondsia chinensis HOM05D004553 ORTHO05D005426 1.6e-17 93.2 109 46.8
Glyma.19G162800 Glycine max HOM05D001448 ORTHO05D005781 6.6e-16 87.8 109 45.0
AagrBONN_evm.TU.Sc2ySwM_228.2479 Anthoceros agrestis HOM05D004553 ORTHO05D005426 1.5e-12 76.6 60 68.3
Oeu044898.1 Olea europaea HOM05D004553 ORTHO05D005426 4.4e-12 75.1 132 40.2
SEGI_01794 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 3.9e-08 62.0 68 48.5
SEGI_33857 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 1.5e-07 60.1 38 76.3
HPP92_007825 Vanilla planifolia HOM05D004553 ORTHO05D005426 3.3e-07 58.9 99 38.4
CAN.G159.14 Capsicum annuum HOM05D004553 ORTHO05D005426 7.3e-07 57.8 40 77.5
CAN.G907.20 Capsicum annuum HOM05D004553 ORTHO05D005426 9.6e-07 57.4 40 75.0


User provided reference genes

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