Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G1466 Ceratophyllum demersum HOM05D007585 ORTHO05D009515 7.8e-86 320.5 166 100.0
Lj2A150G28 Lonicera japonica HOM05D007585 ORTHO05D009515 4.8e-11 72.0 93 33.3
MD06G1124900 Malus domestica HOM05D007585 ORTHO05D009515 3.1e-10 69.3 92 38.0
Zm00001eb045560 Zea mays HOM05D007585 ORTHO05D009515 3.1e-10 69.3 55 40.0
RcHm_v2.0_Chr7g0187881 Rosa chinensis HOM05D007585 ORTHO05D009515 5.3e-10 68.6 60 36.7
Cc08_g17080 Coffea canephora HOM05D007585 ORTHO05D009515 6.9e-10 68.2 81 35.8
CDE02G4680 Ceratophyllum demersum HOM05D007585 ORTHO05D009515 9.1e-10 67.8 56 39.3
Mapoly0064s0081 Marchantia polymorpha HOM05D007585 ORTHO05D009515 9.1e-10 67.8 65 36.9
Potri.001G452800 Populus trichocarpa HOM05D007585 ORTHO05D009515 9.1e-10 67.8 85 31.8
TWI60G0621 Tripterygium wilfordii HOM05D007585 ORTHO05D009515 9.1e-10 67.8 60 38.3
TWI81G0283 Tripterygium wilfordii HOM05D007585 ORTHO05D009515 9.1e-10 67.8 60 38.3
CDE02G1447 Ceratophyllum demersum HOM05D007585 ORTHO05D009515 1.2e-09 67.4 56 39.3
Eucgr.E01096 Eucalyptus grandis HOM05D007585 ORTHO05D009515 1.2e-09 67.4 90 33.3
Aqoxy5G04360 Aquilegia oxysepala HOM05D007585 ORTHO05D009515 1.5e-09 67.0 105 32.4
FvH4_5g10340 Fragaria vesca HOM05D007585 ORTHO05D009515 1.5e-09 67.0 74 32.4
Os10g0481450 Oryza sativa ssp. japonica HOM05D007585 ORTHO05D009515 1.5e-09 67.0 55 36.4
Duzib084G0286 Durio zibethinus HOM05D007585 ORTHO05D009515 2.0e-09 66.6 60 36.7
FAN04G1607 Fragaria x ananassa HOM05D007585 ORTHO05D009515 2.0e-09 66.6 66 34.8
Manes.01G000124 Manihot esculenta HOM05D007585 ORTHO05D009515 2.0e-09 66.6 60 38.3
AagrBONN_evm.TU.Sc2ySwM_344.680 Anthoceros agrestis HOM05D007585 ORTHO05D009515 3.4e-09 65.9 60 40.0
CDE04G3607 Ceratophyllum demersum HOM05D007585 ORTHO05D009515 3.4e-09 65.9 58 36.2
Migut.E00714 Erythranthe guttata HOM05D007585 ORTHO05D009515 3.4e-09 65.9 66 39.4
Migut.O00718 Erythranthe guttata HOM05D007585 ORTHO05D009515 3.4e-09 65.9 66 39.4
Gohir.D12G244000 Gossypium hirsutum HOM05D007585 ORTHO05D009515 3.4e-09 65.9 60 35.0
Gorai.008G261500 Gossypium raimondii HOM05D007585 ORTHO05D009515 3.4e-09 65.9 60 35.0
AL4G44710 Arabidopsis lyrata HOM05D007585 ORTHO05D009515 5.9e-09 65.1 107 31.8
Potri.011G149200 Populus trichocarpa HOM05D007585 ORTHO05D009515 7.7e-09 64.7 94 28.7
Gohir.A12G243000 Gossypium hirsutum HOM05D007585 ORTHO05D009515 1.0e-08 64.3 60 35.0
GSVIVG01019704001 Vitis vinifera HOM05D007585 ORTHO05D009515 1.3e-08 63.9 58 36.2
Zm00001eb221560 Zea mays HOM05D007585 ORTHO05D009515 1.3e-08 63.9 74 32.4
FAN08G0038 Fragaria x ananassa HOM05D007585 ORTHO05D009515 1.7e-08 63.5 53 39.6
FAN13G3159 Fragaria x ananassa HOM05D007585 ORTHO05D009515 1.7e-08 63.5 53 39.6
FAN18G3755 Fragaria x ananassa HOM05D007585 ORTHO05D009515 1.7e-08 63.5 53 39.6
CANSAT21G1102 Cannabis sativa HOM05D007585 ORTHO05D009515 2.2e-08 63.2 74 32.4
Pp3c9_21140 Physcomitrium patens HOM05D007585 ORTHO05D009515 2.2e-08 63.2 104 31.7
AT2G45530 Arabidopsis thaliana HOM05D007585 ORTHO05D009515 2.9e-08 62.8 107 30.8
CSS0006673 Camellia sinensis var. sinensis HOM05D007585 ORTHO05D009515 2.9e-08 62.8 51 41.2
BcaC07g40047 Brassica carinata HOM05D007585 ORTHO05D009515 3.8e-08 62.4 74 32.4
Dinv08688 Davidia involucrata HOM05D007585 ORTHO05D009515 3.8e-08 62.4 122 29.5
Cfa011883 Carpinus fangiana HOM05D007585 ORTHO05D009515 5.0e-08 62.0 108 30.6
SMO364G0716 Selaginella moellendorffii HOM05D007585 ORTHO05D009515 5.0e-08 62.0 53 35.8
Sed0011209 Sechium edule HOM05D007585 ORTHO05D009515 6.5e-08 61.6 139 25.9
Sp5g05480 Schrenkiella parvula HOM05D007585 ORTHO05D009515 8.5e-08 61.2 123 27.6
HPP92_020739 Vanilla planifolia HOM05D007585 ORTHO05D009515 8.5e-08 61.2 117 31.6
MSTRG.13690 Avicennia marina HOM05D007585 ORTHO05D009515 1.1e-07 60.8 101 27.7
Haze_09220 Corylus avellana HOM05D007585 ORTHO05D009515 1.1e-07 60.8 89 32.6
Nitab4.5_0000799g0090 Nicotiana tabacum HOM05D007585 ORTHO05D009515 1.1e-07 60.8 127 29.9
Pp3c18_16700 Physcomitrium patens HOM05D007585 ORTHO05D009515 1.1e-07 60.8 105 30.5
Nitab4.5_0005519g0020 Nicotiana tabacum HOM05D007585 ORTHO05D009515 1.4e-07 60.5 127 28.3
PGR042G2790 Punica granatum HOM05D007585 ORTHO05D009515 1.4e-07 60.5 97 29.9
Nn3g18759 Nelumbo nucifera HOM05D007585 ORTHO05D009515 1.9e-07 60.1 146 28.1
Prupe.5G135500 Prunus persica HOM05D007585 ORTHO05D009515 1.9e-07 60.1 142 27.5
CAN.G792.13 Capsicum annuum HOM05D007585 ORTHO05D009515 2.5e-07 59.7 126 25.4
PSO782G2000 Papaver somniferum HOM05D007585 ORTHO05D009515 2.5e-07 59.7 156 29.5
ATR0579G137 Amborella trichopoda HOM05D007585 ORTHO05D009515 3.2e-07 59.3 113 31.0
Ciclev10023325m.g Citrus clementina HOM05D007585 ORTHO05D009515 3.2e-07 59.3 128 27.3
Sabra16G0305900 Salix brachista HOM05D007585 ORTHO05D009515 3.2e-07 59.3 130 27.7
THA.LOC104823619 Tarenaya hassleriana HOM05D007585 ORTHO05D009515 3.2e-07 59.3 123 26.0
BcaC07g40025 Brassica carinata HOM05D007585 ORTHO05D009515 4.2e-07 58.9 132 27.3
TAR376G0968 Trochodendron aralioides HOM05D007585 ORTHO05D009515 4.2e-07 58.9 144 26.4
GSVIVG01019706001 Vitis vinifera HOM05D007585 ORTHO05D009515 4.2e-07 58.9 58 34.5
CiPaw.11G108300 Carya illinoinensis HOM05D007585 ORTHO05D009515 5.5e-07 58.5 51 41.2
Medtr2g020520 Medicago truncatula HOM05D000958 ORTHO05D000786 5.5e-07 58.5 85 34.1
PSO063G4912 Papaver somniferum HOM05D007585 ORTHO05D009515 7.2e-07 58.2 156 29.5
Sed0016019 Sechium edule HOM05D007585 ORTHO05D009515 7.2e-07 58.2 137 30.7
BcaC07g40077 Brassica carinata HOM05D007585 ORTHO05D009515 9.4e-07 57.8 75 32.0
Cpa.g.sc37.113 Carica papaya HOM05D007585 ORTHO05D009515 9.4e-07 57.8 157 28.0
Glyma.13G213600 Glycine max HOM05D000958 ORTHO05D000786 1.2e-06 57.4 86 36.0
Carub.0004s2815 Capsella rubella HOM05D007585 ORTHO05D009515 2.1e-06 56.6 132 24.2
CDE02G0183 Ceratophyllum demersum HOM05D002523 ORTHO05D002951 2.1e-06 56.6 121 24.0
Sabra11G0134300 Salix brachista HOM05D007585 ORTHO05D009515 2.1e-06 56.6 143 25.9
vmacro11475 Vaccinium macrocarpon HOM05D007585 ORTHO05D009515 2.1e-06 56.6 155 26.5
VMungo0540G1005 Vigna mungo HOM05D000958 ORTHO05D000786 2.1e-06 56.6 86 36.0
CDE04G1614 Ceratophyllum demersum HOM05D007585 ORTHO05D129930 2.7e-06 56.2 78 41.0
MELO3C005804.2 Cucumis melo HOM05D007585 ORTHO05D009515 2.7e-06 56.2 126 26.2
QL12p003204 Quercus lobata HOM05D007585 ORTHO05D009515 2.7e-06 56.2 147 27.2
TAR375G0052 Trochodendron aralioides HOM05D007585 ORTHO05D009515 2.7e-06 56.2 158 27.2
Thhalv10006206m.g Eutrema salsugineum HOM05D007585 ORTHO05D009515 3.6e-06 55.8 121 25.6
Duzib205G0220 Durio zibethinus HOM05D007585 ORTHO05D009515 4.7e-06 55.5 143 25.9
Gohir.D03G088600 Gossypium hirsutum HOM05D007585 ORTHO05D009515 4.7e-06 55.5 142 26.1
Gorai.003G073200 Gossypium raimondii HOM05D007585 ORTHO05D009515 4.7e-06 55.5 142 26.1
Peaxi162Scf01067g00023 Petunia axillaris HOM05D000958 ORTHO05D000786 4.7e-06 55.5 58 44.8
ClCG01G001320 Citrullus lanatus HOM05D007585 ORTHO05D009515 6.1e-06 55.1 147 29.3
Solyc08g013710.4 Solanum lycopersicum HOM05D007585 ORTHO05D009515 6.1e-06 55.1 151 27.2
Thecc.03G215100 Theobroma cacao HOM05D007585 ORTHO05D009515 6.1e-06 55.1 143 26.6
Atru.chr9.1828 Acer truncatum HOM05D007585 ORTHO05D009515 7.9e-06 54.7 146 30.1
CsaV3_5G001450 Cucumis sativus L. HOM05D007585 ORTHO05D009515 7.9e-06 54.7 153 25.5
Gohir.A02G094900 Gossypium hirsutum HOM05D007585 ORTHO05D009515 7.9e-06 54.7 156 25.6
HPP92_019863 Vanilla planifolia HOM05D001002 ORTHO05D000802 7.9e-06 54.7 61 39.3


User provided reference genes

Program Settings