Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G1376 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 1.9e-130 469.2 229 100.0
MBI18_g38876_MAGBIO Magnolia biondii HOM05D004173 ORTHO05D004885 1.3e-27 127.5 223 37.7
TAR365G1150 Trochodendron aralioides HOM05D004173 ORTHO05D004885 1.7e-27 127.1 173 42.2
TAR365G0355 Trochodendron aralioides HOM05D004173 ORTHO05D004885 2.3e-27 126.7 173 42.2
Zm00001eb056440 Zea mays HOM05D004173 ORTHO05D004885 2.3e-27 126.7 177 40.1
CDE02G3998 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 3.9e-27 125.9 150 46.0
Zm00001eb215400 Zea mays HOM05D004173 ORTHO05D004885 9.5e-26 121.3 163 39.9
Os03g0736900 Oryza sativa ssp. japonica HOM05D004173 ORTHO05D004885 1.6e-25 120.6 154 40.3
Nn2g10306 Nelumbo nucifera HOM05D004173 ORTHO05D004885 4.7e-25 119.0 157 40.8
ATR0776G079 Amborella trichopoda HOM05D004173 ORTHO05D004885 6.2e-25 118.6 176 40.3
ATR0124G034 Amborella trichopoda HOM05D004173 ORTHO05D004885 4.0e-24 115.9 171 38.6
Nn5g26849 Nelumbo nucifera HOM05D004173 ORTHO05D004885 1.2e-23 114.4 149 41.6
PSO675G3687 Papaver somniferum HOM05D004173 ORTHO05D004885 2.6e-23 113.2 200 34.5
PSO421G0661 Papaver somniferum HOM05D004173 ORTHO05D004885 1.3e-22 110.9 212 33.0
Cc10_g16360 Coffea canephora HOM05D004173 ORTHO05D004885 1.7e-22 110.5 173 34.7
Aqoxy5G02899 Aquilegia oxysepala HOM05D004173 ORTHO05D004885 6.4e-22 108.6 162 40.1
PSO063G2850 Papaver somniferum HOM05D004173 ORTHO05D004885 6.4e-22 108.6 208 34.6
PSO104G0082 Papaver somniferum HOM05D004173 ORTHO05D004885 8.3e-22 108.2 191 35.1
PSO266G0063 Papaver somniferum HOM05D004173 ORTHO05D004885 1.4e-21 107.5 220 33.6
Peaxi162Scf00739g00035 Petunia axillaris HOM05D004173 ORTHO05D004885 1.9e-21 107.1 184 34.2
Medtr3g093970 Medicago truncatula HOM05D004173 ORTHO05D004885 2.1e-20 103.6 153 37.9
CSS0041127 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 4.6e-20 102.4 193 32.6
CSS0049649 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 4.6e-20 102.4 193 32.6
CAN.G24.14 Capsicum annuum HOM05D004173 ORTHO05D004885 4.6e-20 102.4 162 34.6
PGSC0003DMG400016638 Solanum tuberosum HOM05D004173 ORTHO05D004885 7.8e-20 101.7 162 37.7
MSTRG.18054 Avicennia marina HOM05D004173 ORTHO05D004885 1.0e-19 101.3 175 35.4
MD01G1167600 Malus domestica HOM05D004173 ORTHO05D004885 1.0e-19 101.3 157 36.3
PSO478G3294 Papaver somniferum HOM05D004173 ORTHO05D004885 1.3e-19 100.9 234 30.3
HPP92_012755 Vanilla planifolia HOM05D004173 ORTHO05D004885 1.3e-19 100.9 235 31.1
Nitab4.5_0000171g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.7e-19 100.5 189 32.8
MD07G1233600 Malus domestica HOM05D004173 ORTHO05D004885 2.3e-19 100.1 158 34.8
CAN.G100.76 Capsicum annuum HOM05D004173 ORTHO05D004885 3.9e-19 99.4 164 32.9
Dinv34482 Davidia involucrata HOM05D004173 ORTHO05D004885 1.5e-18 97.4 234 30.8
Oeu025786.2 Olea europaea HOM05D004173 ORTHO05D004885 1.5e-18 97.4 226 29.2
Ca_16866_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 1.9e-18 97.1 157 36.9
Ca_29953_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 1.9e-18 97.1 157 36.9
Oeu063983.1 Olea europaea HOM05D004173 ORTHO05D004885 4.3e-18 95.9 178 32.6
Solyc06g049020.1 Solanum lycopersicum HOM05D004173 ORTHO05D004885 4.3e-18 95.9 196 33.7
Sopen06g015380 Solanum pennellii HOM05D004173 ORTHO05D004885 4.3e-18 95.9 196 33.7
Manes.07G141000 Manihot esculenta HOM05D004173 ORTHO05D004885 5.6e-18 95.5 150 34.0
Peaxi162Scf00739g00036 Petunia axillaris HOM05D004173 ORTHO05D004885 5.6e-18 95.5 186 31.2
Prupe.2G264000 Prunus persica HOM05D004173 ORTHO05D004885 5.6e-18 95.5 155 34.2
FAN03G3439 Fragaria x ananassa HOM05D004173 ORTHO05D004885 7.3e-18 95.1 175 32.6
RcHm_v2.0_Chr1g0372231 Rosa chinensis HOM05D004173 ORTHO05D004885 7.3e-18 95.1 156 35.3
Gohir.D05G280200 Gossypium hirsutum HOM05D004173 ORTHO05D004885 9.6e-18 94.7 147 36.7
Cpa.g.sc19.59 Carica papaya HOM05D004173 ORTHO05D004885 1.2e-17 94.4 244 28.7
C09p71450 Brassica napus HOM05D004173 ORTHO05D004885 2.1e-17 93.6 169 31.4
BolC9t59908H Brassica oleracea HOM05D004173 ORTHO05D004885 2.1e-17 93.6 169 31.4
CARHR207980 Cardamine hirsuta HOM05D004173 ORTHO05D004885 2.8e-17 93.2 171 32.7
Lj1g0005357 Lotus japonicus HOM05D004173 ORTHO05D004885 2.8e-17 93.2 148 35.1
Actinidia00999 Actinidia chinensis HOM05D004173 ORTHO05D004885 3.6e-17 92.8 179 33.5
unitig_37.g11910 Utricularia gibba HOM05D004173 ORTHO05D004885 3.6e-17 92.8 144 34.0
AL6G15090 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 4.7e-17 92.4 175 31.4
A10p30940 Brassica napus HOM05D004173 ORTHO05D004885 4.7e-17 92.4 169 31.4
BraA10t45139Z Brassica rapa HOM05D004173 ORTHO05D004885 4.7e-17 92.4 169 31.4
Hma1.2p1_0264F.1_g106180 Hydrangea macrophylla HOM05D004173 ORTHO05D004885 4.7e-17 92.4 162 33.3
Psat5g068840 Pisum sativum HOM05D004173 ORTHO05D004885 4.7e-17 92.4 154 33.8
PGSC0003DMG400011642 Solanum tuberosum HOM05D004173 ORTHO05D004885 4.7e-17 92.4 166 31.9
Aa31LG10G11250 Aethionema arabicum HOM05D004173 ORTHO05D004885 6.2e-17 92.0 160 36.2
CSS0045557 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 6.2e-17 92.0 149 34.2
Carub.0006s0418 Capsella rubella HOM05D004173 ORTHO05D004885 6.2e-17 92.0 169 32.5
Ciclev10032642m.g Citrus clementina HOM05D004173 ORTHO05D004885 6.2e-17 92.0 200 28.0
Manes.07G143600 Manihot esculenta HOM05D004173 ORTHO05D004885 6.2e-17 92.0 150 33.3
AT5G05250 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 8.1e-17 91.7 173 32.4
Cfa001210 Carpinus fangiana HOM05D004173 ORTHO05D004885 8.1e-17 91.7 151 35.8
CiPaw.01G306500 Carya illinoinensis HOM05D004173 ORTHO05D004885 8.1e-17 91.7 143 36.4
CsaV3_6G002310 Cucumis sativus L. HOM05D004173 ORTHO05D004885 8.1e-17 91.7 193 32.1
FAN10G3668 Fragaria x ananassa HOM05D004173 ORTHO05D004885 8.1e-17 91.7 160 34.4
Manes.10G001300 Manihot esculenta HOM05D004173 ORTHO05D004885 8.1e-17 91.7 143 37.1
Potri.019G058000 Populus trichocarpa HOM05D004173 ORTHO05D004885 8.1e-17 91.7 146 34.2
TPR.G1732 Trifolium pratense HOM05D004173 ORTHO05D004885 8.1e-17 91.7 154 34.4
Gohir.A05G278500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.1e-16 91.3 147 35.4
Lalb_Chr23g0272221 Lupinus albus HOM05D004173 ORTHO05D004885 1.4e-16 90.9 155 35.5
arahy.Tifrunner.gnm1.ann1.7F477P Arachis hypogaea HOM05D004173 ORTHO05D004885 1.8e-16 90.5 152 33.6
Duzib128G1795 Durio zibethinus HOM05D004173 ORTHO05D004885 2.4e-16 90.1 152 33.6
FvH4_7g25910 Fragaria vesca HOM05D004173 ORTHO05D004885 2.4e-16 90.1 177 31.6
FAN06G1323 Fragaria x ananassa HOM05D004173 ORTHO05D004885 2.4e-16 90.1 177 31.6
Gorai.009G293700 Gossypium raimondii HOM05D004173 ORTHO05D004885 2.4e-16 90.1 147 35.4
Thhalv10006215m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 5.2e-16 89.0 153 32.7
Nitab4.5_0002279g0040 Nicotiana tabacum HOM05D004173 ORTHO05D004885 5.2e-16 89.0 162 32.7
Pp3c2_14400 Physcomitrium patens HOM05D004173 ORTHO05D004885 5.2e-16 89.0 162 34.6
Sp6g37580 Schrenkiella parvula HOM05D004173 ORTHO05D004885 5.2e-16 89.0 171 30.4
CAN.G203.54 Capsicum annuum HOM05D004173 ORTHO05D004885 8.9e-16 88.2 167 31.1
MELO3C020007.2 Cucumis melo HOM05D004173 ORTHO05D004885 8.9e-16 88.2 201 28.9
Eucgr.J00114 Eucalyptus grandis HOM05D004173 ORTHO05D004885 8.9e-16 88.2 154 33.8
Thhalv10014558m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 8.9e-16 88.2 155 31.0
Sed0028126 Sechium edule HOM05D004173 ORTHO05D004885 8.9e-16 88.2 199 30.2
vmacro09960 Vaccinium macrocarpon HOM05D004173 ORTHO05D004885 8.9e-16 88.2 149 34.2
BolC4t25192H Brassica oleracea HOM05D004173 ORTHO05D004885 2.6e-15 86.7 152 32.9
Pp3c14_17300 Physcomitrium patens HOM05D004173 ORTHO05D004885 2.6e-15 86.7 173 34.1
Rhsim09G0185800 Rhododendron simsii HOM05D004173 ORTHO05D004885 2.6e-15 86.7 144 33.3
SGA_v2.0_scaffold60G20889 Striga asiatica HOM05D004173 ORTHO05D004885 3.4e-15 86.3 150 30.7
THA.LOC104824365 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 3.4e-15 86.3 161 31.7
AUR62024933 Chenopodium quinoa HOM05D004173 ORTHO05D004885 4.4e-15 85.9 151 35.1
BcaC02g09832 Brassica carinata HOM05D004173 ORTHO05D004885 5.8e-15 85.5 152 32.2
C04p36060 Brassica napus HOM05D004173 ORTHO05D004885 5.8e-15 85.5 152 32.2
Duzib114G0418 Durio zibethinus HOM05D004173 ORTHO05D004885 5.8e-15 85.5 180 31.1
Thecc.10G181100 Theobroma cacao HOM05D004173 ORTHO05D004885 5.8e-15 85.5 186 29.6
Sc05g0006880 Simmondsia chinensis HOM05D004173 ORTHO05D004885 7.6e-15 85.1 133 36.1
Atru.chr12.182 Acer truncatum HOM05D004173 ORTHO05D004885 1.3e-14 84.3 231 28.6
AL5G37690 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 1.3e-14 84.3 151 31.1
AT3G56360 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 1.3e-14 84.3 151 31.1
THA.LOC104813511 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 1.3e-14 84.3 161 31.1
BcaB02g08372 Brassica carinata HOM05D004173 ORTHO05D004885 1.7e-14 84.0 153 32.7
Ah.12g064380 Amaranthus hybridus HOM05D004173 ORTHO05D004885 2.2e-14 83.6 152 32.9
Sp5g06150 Schrenkiella parvula HOM05D004173 ORTHO05D004885 2.2e-14 83.6 162 30.9
SEGI_03811 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 2.9e-14 83.2 159 33.3
Migut.F00606 Erythranthe guttata HOM05D004173 ORTHO05D004885 3.8e-14 82.8 155 31.0
Sopen05g030770 Solanum pennellii HOM05D004173 ORTHO05D004885 3.8e-14 82.8 174 29.3
BcaC07g39948 Brassica carinata HOM05D004173 ORTHO05D004885 4.9e-14 82.4 148 33.1
A04p03290 Brassica napus HOM05D004173 ORTHO05D004885 4.9e-14 82.4 152 32.2
C08p31680 Brassica napus HOM05D004173 ORTHO05D004885 4.9e-14 82.4 148 33.1
BraA04t16106Z Brassica rapa HOM05D004173 ORTHO05D004885 4.9e-14 82.4 152 32.2
CARHR166510 Cardamine hirsuta HOM05D004173 ORTHO05D004885 4.9e-14 82.4 160 30.0
QL08p064831 Quercus lobata HOM05D004173 ORTHO05D004885 4.9e-14 82.4 179 30.7
SalBow3G3840 Salvia bowleyana HOM05D004173 ORTHO05D004885 4.9e-14 82.4 158 32.3
THA.LOC104803208 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 4.9e-14 82.4 208 27.9
Aa31LG11G6110 Aethionema arabicum HOM05D004173 ORTHO05D004885 8.4e-14 81.6 178 28.7
BcaC06g32235 Brassica carinata HOM05D004173 ORTHO05D004885 8.4e-14 81.6 166 29.5
BcaC07g39950 Brassica carinata HOM05D004173 ORTHO05D004885 8.4e-14 81.6 149 32.2
TWI73G0681 Tripterygium wilfordii HOM05D004173 ORTHO05D004885 8.4e-14 81.6 180 31.7
A09p49310 Brassica napus HOM05D004173 ORTHO05D004885 1.1e-13 81.3 150 30.7
BraA09t40385Z Brassica rapa HOM05D004173 ORTHO05D004885 1.1e-13 81.3 150 30.7
CANSAT25G2618 Cannabis sativa HOM05D004173 ORTHO05D004885 1.4e-13 80.9 192 28.6
BolC8t50789H Brassica oleracea HOM05D004173 ORTHO05D004885 1.9e-13 80.5 149 31.5
PGR044G2104 Punica granatum HOM05D004173 ORTHO05D004885 1.9e-13 80.5 160 31.2
SEGI_33270 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 1.9e-13 80.5 185 30.8
Carub.0005s2314 Capsella rubella HOM05D004173 ORTHO05D004885 3.2e-13 79.7 160 30.6
Glyma.06G142900 Glycine max HOM05D004173 ORTHO05D004885 4.2e-13 79.3 182 31.3
Lalb_Chr23g0272201 Lupinus albus HOM05D004173 ORTHO05D004885 4.2e-13 79.3 156 32.1
Peaxi162Scf00167g01213 Petunia axillaris HOM05D004173 ORTHO05D004885 5.4e-13 79.0 154 32.5
Glyma.04G222500 Glycine max HOM05D004173 ORTHO05D004885 9.3e-13 78.2 184 29.9
THA.LOC104826832 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 9.3e-13 78.2 150 32.7
DCAR_014665 Daucus carota HOM05D004173 ORTHO05D004885 2.1e-12 77.0 180 28.9
AUR62030611 Chenopodium quinoa HOM05D004173 ORTHO05D004885 7.8e-12 75.1 146 34.2
VMungo1309G0457 Vigna mungo HOM05D004173 ORTHO05D004885 7.8e-12 75.1 148 30.4
Lsat_1_v5_gn_8_11461 Lactuca sativa HOM05D004173 ORTHO05D004885 1.3e-11 74.3 192 27.1
Phvul.009G044100 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 1.3e-11 74.3 149 30.9
Lsat_1_v5_gn_9_60020 Lactuca sativa HOM05D004173 ORTHO05D004885 1.7e-11 73.9 162 29.0
HanXRQChr08g0221561 Helianthus annuus HOM05D004173 ORTHO05D004885 2.3e-11 73.6 158 28.5
HanXRQChr09g0252211 Helianthus annuus HOM05D004173 ORTHO05D004885 2.3e-11 73.6 169 31.4
Gohir.D13G006700 Gossypium hirsutum HOM05D004173 ORTHO05D004885 5.1e-11 72.4 158 31.0
Sc10g0002990 Simmondsia chinensis HOM05D004173 ORTHO05D004885 5.1e-11 72.4 149 30.9
ClCG11G005670 Citrullus lanatus HOM05D004173 ORTHO05D004885 1.9e-10 70.5 171 29.2
Gorai.013G006900 Gossypium raimondii HOM05D004173 ORTHO05D004885 1.9e-10 70.5 158 29.7
Gohir.A13G006500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 2.5e-10 70.1 158 30.4
Gohir.A05G403100 Gossypium hirsutum HOM05D004173 ORTHO05D004885 7.3e-10 68.6 143 30.8
Dinv21845 Davidia involucrata HOM05D004173 ORTHO05D004885 9.6e-10 68.2 126 31.7
Lsat_1_v5_gn_2_126200 Lactuca sativa HOM05D004173 ORTHO05D004885 1.3e-09 67.8 216 27.3
Haze_17356 Corylus avellana HOM05D004173 ORTHO05D004885 2.1e-09 67.0 207 28.5
Gohir.D04G012400 Gossypium hirsutum HOM05D004173 ORTHO05D004885 2.1e-09 67.0 113 33.6
ECA238G3313 Erigeron canadensis HOM05D004173 ORTHO05D004885 4.8e-09 65.9 170 28.2
Gorai.012G014700 Gossypium raimondii HOM05D004173 ORTHO05D004885 3.1e-08 63.2 129 30.2
CBR_g24287 Chara braunii HOM05D004173 ORTHO05D004885 5.3e-08 62.4 59 50.8
Pp3c10_16350 Physcomitrium patens HOM05D004173 ORTHO05D004885 1.5e-07 60.8 236 26.3
Ah.14g087000 Amaranthus hybridus HOM05D004173 ORTHO05D004885 2.0e-07 60.5 203 25.6
Dinv05055 Davidia involucrata HOM05D004173 ORTHO05D004885 2.6e-07 60.1 118 33.1
Nitab4.5_0002846g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 3.4e-07 59.7 120 28.3
Mapoly0082s0027 Marchantia polymorpha HOM05D004173 ORTHO05D004885 1.3e-06 57.8 178 28.7


User provided reference genes

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