Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G1374 Ceratophyllum demersum HOM05D000540 ORTHO05D009557 2.0e-43 178.7 90 100.0
CDE07G1014 Ceratophyllum demersum HOM05D000540 ORTHO05D009557 5.8e-43 177.2 90 98.9
PSO541G1563 Papaver somniferum HOM05D000540 ORTHO05D009557 2.4e-20 102.1 83 53.0
Aqoxy3G00098 Aquilegia oxysepala HOM05D000540 ORTHO05D009557 4.0e-20 101.3 85 60.0
PGR111G0101 Punica granatum HOM05D000540 ORTHO05D009557 1.2e-19 99.8 73 58.9
C03p38140 Brassica napus HOM05D000540 ORTHO05D009557 3.4e-19 98.2 73 61.6
BolSC35t60674H Brassica oleracea HOM05D000540 ORTHO05D009557 3.4e-19 98.2 73 61.6
BraSC59t46567Z Brassica rapa HOM05D000540 ORTHO05D009557 3.4e-19 98.2 73 61.6
BolSC35t60725H Brassica oleracea HOM05D000540 ORTHO05D000681 4.4e-19 97.8 70 62.9
Potri.005G154674 Populus trichocarpa HOM05D000540 ORTHO05D009557 4.4e-19 97.8 70 60.0
Potri.013G137688 Populus trichocarpa HOM05D000540 ORTHO05D009557 5.8e-19 97.4 70 60.0
CARHR282280 Cardamine hirsuta HOM05D000540 ORTHO05D009557 7.6e-19 97.1 73 60.3
PSO548G0068 Papaver somniferum HOM05D000540 ORTHO05D009557 7.6e-19 97.1 70 60.0
Potri.011G074301 Populus trichocarpa HOM05D000540 ORTHO05D009557 7.6e-19 97.1 70 60.0
DCAR_032526 Daucus carota HOM05D000540 ORTHO05D009557 9.9e-19 96.7 73 57.5
HanXRQChr10g0318011 Helianthus annuus HOM05D000540 ORTHO05D009557 9.9e-19 96.7 70 57.1
Hma1.2p1_0192F.1_g083730 Hydrangea macrophylla HOM05D000540 ORTHO05D009557 9.9e-19 96.7 70 58.6
Hma1.2p1_0247F.1_g101832 Hydrangea macrophylla HOM05D000540 ORTHO05D009557 9.9e-19 96.7 70 58.6
Hma1.2p1_0298F.1_g117734 Hydrangea macrophylla HOM05D000540 ORTHO05D009557 9.9e-19 96.7 70 58.6
Hma1.2p1_0818F.1_g223303 Hydrangea macrophylla HOM05D000540 ORTHO05D009557 9.9e-19 96.7 70 58.6
Lalb_Chr25g0283401 Lupinus albus HOM05D000540 ORTHO05D009557 1.3e-18 96.3 70 58.6
arahy.Tifrunner.gnm1.ann1.YHR3P6 Arachis hypogaea HOM05D000540 ORTHO05D009557 1.7e-18 95.9 70 58.6
Lsat_1_v5_gn_0_41560 Lactuca sativa HOM05D000540 ORTHO05D000681 1.7e-18 95.9 70 57.1
Peaxi162Scf00299g00117 Petunia axillaris HOM05D000540 ORTHO05D009557 2.2e-18 95.5 70 58.6
C09p40100 Brassica napus HOM05D000540 ORTHO05D000681 3.8e-18 94.7 70 61.4
BolC9t56905H Brassica oleracea HOM05D000540 ORTHO05D009557 6.4e-18 94.0 73 60.3
Medtr3g035720 Medicago truncatula HOM05D000540 ORTHO05D009557 6.4e-18 94.0 70 57.1
Medtr4g051420 Medicago truncatula HOM05D000540 ORTHO05D009557 6.4e-18 94.0 70 57.1
PSO675G4368 Papaver somniferum HOM05D000540 ORTHO05D009557 8.4e-18 93.6 67 58.2
SMO086G0012 Selaginella moellendorffii HOM05D000540 ORTHO05D009557 1.4e-17 92.8 68 60.3
Gohir.A12G089750 Gossypium hirsutum HOM05D000540 ORTHO05D009557 3.2e-17 91.7 79 50.6
Lsat_1_v5_gn_5_50501 Lactuca sativa HOM05D000540 ORTHO05D009557 5.4e-17 90.9 70 54.3
CARHR114570 Cardamine hirsuta HOM05D000540 ORTHO05D009557 2.1e-16 89.0 70 55.7
Lsat_1_v5_gn_3_22600 Lactuca sativa HOM05D000540 ORTHO05D000681 1.0e-15 86.7 60 60.0
MBI12_g23294_MAGBIO Magnolia biondii HOM05D000540 ORTHO05D009557 1.7e-15 85.9 67 55.2
Gorai.004G123300 Gossypium raimondii HOM05D000540 ORTHO05D009557 3.0e-15 85.1 71 49.3
Gohir.A02G076002 Gossypium hirsutum HOM05D000540 ORTHO05D009557 6.6e-15 84.0 69 53.6
ECA236G4531 Erigeron canadensis HOM05D000540 ORTHO05D009557 8.7e-15 83.6 87 49.4
Hund31045 Selenicereus undatus HOM05D000540 ORTHO05D000681 8.7e-15 83.6 67 55.2
SGA_v2.0_scaffold126G33916 Striga asiatica HOM05D000218 ORTHO05D000125 8.7e-15 83.6 90 50.0
Gohir.D06G105033 Gossypium hirsutum HOM05D000540 ORTHO05D009557 1.5e-14 82.8 66 51.5
Medtr0002s0360 Medicago truncatula HOM05D000540 ORTHO05D000681 1.5e-14 82.8 80 42.5
Medtr0002s0800 Medicago truncatula HOM05D000540 ORTHO05D000681 1.5e-14 82.8 80 42.5
Hund29685 Selenicereus undatus HOM05D002578 ORTHO05D009557 2.5e-14 82.0 66 53.0
Hund30542 Selenicereus undatus HOM05D002578 ORTHO05D009557 2.5e-14 82.0 66 53.0
Hund31295 Selenicereus undatus HOM05D002578 ORTHO05D009557 2.5e-14 82.0 66 53.0
Gohir.D04G028750 Gossypium hirsutum HOM05D000540 ORTHO05D009557 3.3e-14 81.6 69 53.6
HanXRQChr11g0337241 Helianthus annuus HOM05D000540 ORTHO05D009557 3.3e-14 81.6 82 50.0
Prupe.4G266600 Prunus persica HOM05D000540 ORTHO05D009557 9.6e-14 80.1 50 66.0
Lsat_1_v5_gn_7_110000 Lactuca sativa HOM05D000540 ORTHO05D009557 1.6e-13 79.3 85 44.7
MSTRG.19148 Avicennia marina HOM05D000218 ORTHO05D000125 2.1e-13 79.0 82 46.3
Oeu011524.2 Olea europaea HOM05D000218 ORTHO05D000125 2.1e-13 79.0 84 48.8
Oeu025653.1 Olea europaea HOM05D000218 ORTHO05D000125 2.1e-13 79.0 67 52.2
HanXRQChr15g0494391 Helianthus annuus HOM05D000540 ORTHO05D009557 4.7e-13 77.8 80 47.5
MBI12_g26681_MAGBIO Magnolia biondii HOM05D002578 ORTHO05D009557 4.7e-13 77.8 61 54.1
Lsat_1_v5_gn_5_185760 Lactuca sativa HOM05D000540 ORTHO05D009557 8.1e-13 77.0 85 44.7
Potri.019G013302 Populus trichocarpa HOM05D000540 ORTHO05D009557 2.4e-12 75.5 62 51.6
Oeu001341.1 Olea europaea HOM05D000218 ORTHO05D000125 4.0e-12 74.7 84 46.4
FvH4_6g09000 Fragaria vesca HOM05D000445 ORTHO05D000314 5.3e-12 74.3 48 64.6
arahy.Tifrunner.gnm1.ann1.CR1XRQ Arachis hypogaea HOM05D003165 ORTHO05D009557 2.0e-11 72.4 55 58.2
Migut.J00430 Erythranthe guttata HOM05D000540 ORTHO05D009557 2.0e-11 72.4 69 50.7
PSO675G7318 Papaver somniferum HOM05D000540 ORTHO05D009557 2.0e-11 72.4 65 52.3
unitig_699.g19584 Utricularia gibba HOM05D000218 ORTHO05D000125 2.0e-11 72.4 84 44.0
Nitab4.5_0001783g0160 Nicotiana tabacum HOM05D000540 ORTHO05D009557 3.4e-11 71.6 53 56.6
PSO349G0315 Papaver somniferum HOM05D000540 ORTHO05D009557 5.8e-11 70.9 65 50.8
RcHm_v2.0_CPg0501831 Rosa chinensis HOM05D000540 ORTHO05D009557 2.2e-10 68.9 41 73.2
Gorai.005G167500 Gossypium raimondii HOM05D000540 ORTHO05D009557 3.8e-10 68.2 54 48.1
Haze_26884 Corylus avellana HOM05D000540 ORTHO05D000681 4.9e-10 67.8 82 41.5
Glyma.18G078500 Glycine max HOM05D000540 ORTHO05D009557 4.9e-10 67.8 41 70.7
RcHm_v2.0_Chr1g0329571 Rosa chinensis HOM05D000540 ORTHO05D009557 8.4e-10 67.0 41 70.7
Lj2P692T49 Lonicera japonica HOM05D000540 ORTHO05D009557 1.4e-09 66.2 53 47.2
Nn021s41517 Nelumbo nucifera HOM05D000540 ORTHO05D009557 1.4e-09 66.2 41 68.3
Nn070s42375 Nelumbo nucifera HOM05D000540 ORTHO05D009557 1.4e-09 66.2 41 68.3
Hund04059 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.9e-09 65.9 49 55.1
Hund19321 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.9e-09 65.9 49 55.1
Hund26846 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.9e-09 65.9 49 55.1
Hund27592 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.9e-09 65.9 49 55.1
Hund27964 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.9e-09 65.9 49 55.1
Hund28044 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.9e-09 65.9 49 55.1
Hund28461 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.9e-09 65.9 49 55.1
Hund28465 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.9e-09 65.9 49 55.1
Hund28634 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.9e-09 65.9 49 55.1
Hund29039 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.9e-09 65.9 49 55.1
Hund29219 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.9e-09 65.9 49 55.1
Hund29502 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.9e-09 65.9 49 55.1
Hund29527 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.9e-09 65.9 49 55.1
Hund29546 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.9e-09 65.9 49 55.1
Hund29570 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.9e-09 65.9 49 55.1
Hund29607 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.9e-09 65.9 49 55.1
Hund29614 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.9e-09 65.9 49 55.1
Hund29663 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.9e-09 65.9 49 55.1
Hund29959 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.9e-09 65.9 49 55.1
Hund30110 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.9e-09 65.9 49 55.1
Hund30114 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.9e-09 65.9 49 55.1
Hund30274 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.9e-09 65.9 49 55.1
Hund30581 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.9e-09 65.9 49 55.1
AL1G45050 Arabidopsis lyrata HOM05D000540 ORTHO05D009557 2.4e-09 65.5 41 73.2
AL2G20510 Arabidopsis lyrata HOM05D000540 ORTHO05D009557 2.4e-09 65.5 41 73.2
BNapus_Darmor_BZH_scaffold_253p00380 Brassica napus HOM05D000540 ORTHO05D009557 2.4e-09 65.5 41 73.2
BolSC56t61244H Brassica oleracea HOM05D000540 ORTHO05D009557 2.4e-09 65.5 41 73.2
BraSC103t45442Z Brassica rapa HOM05D000540 ORTHO05D009557 2.4e-09 65.5 41 73.2
BolC7t41706H Brassica oleracea HOM05D000540 ORTHO05D009557 7.1e-09 63.9 41 70.7
Cre08.g375250 Chlamydomonas reinhardtii HOM05D000540 ORTHO05D009557 7.1e-09 63.9 70 41.4
Gohir.D05G303851 Gossypium hirsutum HOM05D000540 ORTHO05D009557 1.2e-08 63.2 41 65.9
Oeu028768.1 Olea europaea HOM05D000540 ORTHO05D009557 2.1e-08 62.4 41 65.9
Nn4g25228 Nelumbo nucifera HOM05D000540 ORTHO05D009557 3.5e-08 61.6 41 63.4
AagrBONN_evm.TU.Sc2ySwM_117.3450 Anthoceros agrestis HOM05D000540 ORTHO05D008105 7.8e-08 60.5 50 54.0
MBI12_g18826_MAGBIO Magnolia biondii HOM05D000540 ORTHO05D009557 1.0e-07 60.1 41 61.0
BolSC29t60614H Brassica oleracea HOM05D000540 ORTHO05D009557 1.7e-07 59.3 44 56.8
Manes.07G029100 Manihot esculenta HOM05D000540 ORTHO05D008105 3.0e-07 58.5 63 41.3
Prupe.2G123500 Prunus persica HOM05D000540 ORTHO05D008105 3.0e-07 58.5 66 37.9
RcHm_v2.0_Chr2g0118531 Rosa chinensis HOM05D000540 ORTHO05D009557 3.0e-07 58.5 41 63.4
AagrBONN_evm.TU.Sc2ySwM_228.180 Anthoceros agrestis HOM05D000540 ORTHO05D008105 5.1e-07 57.8 50 52.0
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 1.1e-06 56.6 79 38.0
Cfa009693 Carpinus fangiana HOM05D002804 ORTHO05D003755 1.9e-06 55.8 78 38.5
MD07G1100000 Malus domestica HOM05D000540 ORTHO05D008105 2.5e-06 55.5 66 36.4
MD02G1217700 Malus domestica HOM05D000540 ORTHO05D008105 3.3e-06 55.1 63 36.5
Nitab4.5_0004376g0170 Nicotiana tabacum HOM05D002578 ORTHO05D009557 3.3e-06 55.1 36 58.3
Zm00001eb219510 Zea mays HOM05D000540 ORTHO05D008105 4.3e-06 54.7 50 44.0
SalBow3G1131 Salvia bowleyana HOM05D042125 ORTHO05D037497 5.6e-06 54.3 53 52.8
SalBow3G3871 Salvia bowleyana HOM05D042125 ORTHO05D037497 5.6e-06 54.3 53 52.8
Zm00001eb003570 Zea mays HOM05D000540 ORTHO05D008105 5.6e-06 54.3 65 40.0
Zm00001eb049250 Zea mays HOM05D000540 ORTHO05D008105 5.6e-06 54.3 65 40.0
AL8G10730 Arabidopsis lyrata HOM05D000540 ORTHO05D008105 7.3e-06 53.9 67 38.8
AT5G47320 Arabidopsis thaliana HOM05D000540 ORTHO05D008105 7.3e-06 53.9 67 38.8
Carub.0008s0045 Capsella rubella HOM05D000540 ORTHO05D008105 7.3e-06 53.9 67 38.8
FvH4_5g23230 Fragaria vesca HOM05D000540 ORTHO05D008105 9.6e-06 53.5 48 43.8
FAN04G1833 Fragaria x ananassa HOM05D000540 ORTHO05D008105 9.6e-06 53.5 48 43.8
FAN18G0695 Fragaria x ananassa HOM05D000540 ORTHO05D008105 9.6e-06 53.5 48 43.8
FAN18G3733 Fragaria x ananassa HOM05D000540 ORTHO05D008105 9.6e-06 53.5 48 43.8
RcHm_v2.0_Chr7g0212161 Rosa chinensis HOM05D000540 ORTHO05D008105 9.6e-06 53.5 48 43.8


User provided reference genes

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