Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G1366 Ceratophyllum demersum HOM05D004217 ORTHO05D005561 3.9e-157 558.1 296 100.0
Nn7g37855 Nelumbo nucifera HOM05D004217 ORTHO05D005561 4.1e-114 415.2 300 72.3
Nn7g36831 Nelumbo nucifera HOM05D004217 ORTHO05D005561 5.4e-114 414.8 300 72.3
CSS0007689 Camellia sinensis var. sinensis HOM05D004217 ORTHO05D005561 1.2e-113 413.7 299 72.6
GSVIVG01027868001 Vitis vinifera HOM05D004217 ORTHO05D005561 1.2e-113 413.7 299 71.9
Actinidia39171 Actinidia chinensis HOM05D004217 ORTHO05D005561 2.0e-113 412.9 299 72.2
Aqoxy2G04056 Aquilegia oxysepala HOM05D004217 ORTHO05D005561 4.6e-113 411.8 301 72.8
TWI77G0241 Tripterygium wilfordii HOM05D004217 ORTHO05D005561 1.0e-112 410.6 280 75.0
TAR623G0725 Trochodendron aralioides HOM05D004217 ORTHO05D005561 1.0e-112 410.6 299 71.9
Thecc.01G136700 Theobroma cacao HOM05D004217 ORTHO05D005561 3.0e-112 409.1 301 71.1
RhsimUnG0219800 Rhododendron simsii HOM05D004217 ORTHO05D005561 3.9e-112 408.7 306 71.9
Dinv34387 Davidia involucrata HOM05D004217 ORTHO05D005561 8.6e-112 407.5 299 72.2
RhsimUnG0216700 Rhododendron simsii HOM05D000657 ORTHO05D002092 1.5e-111 406.8 306 71.9
Duzib264G1114 Durio zibethinus HOM05D004217 ORTHO05D005561 2.5e-111 406.0 301 70.8
TWI53G1501 Tripterygium wilfordii HOM05D004217 ORTHO05D005561 5.6e-111 404.8 280 74.3
Cpa.g.sc5.203 Carica papaya HOM05D004217 ORTHO05D005561 1.6e-110 403.3 299 69.9
vmacro07818 Vaccinium macrocarpon HOM05D004217 ORTHO05D005561 1.6e-110 403.3 280 75.0
Ciclev10021431m.g Citrus clementina HOM05D004217 ORTHO05D005561 2.8e-110 402.5 296 70.6
Manes.09G007800 Manihot esculenta HOM05D004217 ORTHO05D005561 3.6e-110 402.1 299 70.2
MBI15_g40529_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D005561 4.7e-110 401.7 282 72.0
Gorai.007G066400 Gossypium raimondii HOM05D004217 ORTHO05D005561 1.1e-109 400.6 301 69.8
Gohir.A11G057400 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.4e-109 400.2 301 69.8
Gohir.D11G061600 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.4e-109 400.2 301 69.8
PSO339G2795 Papaver somniferum HOM05D004217 ORTHO05D005561 1.8e-109 399.8 292 71.6
SGA_v2.0_scaffold273G46404 Striga asiatica HOM05D004217 ORTHO05D005561 1.8e-109 399.8 292 69.9
Lj2A395G21 Lonicera japonica HOM05D004217 ORTHO05D005561 4.0e-109 398.7 280 72.9
Potri.006G046200 Populus trichocarpa HOM05D004217 ORTHO05D005561 5.2e-109 398.3 280 72.5
MBI14_g19459_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D005561 1.5e-108 396.7 282 72.0
Hund24631 Selenicereus undatus HOM05D004217 ORTHO05D005561 2.0e-108 396.4 284 72.2
Solyc10g079740.2 Solanum lycopersicum HOM05D004217 ORTHO05D005561 3.4e-108 395.6 280 72.1
Sopen10g030370 Solanum pennellii HOM05D004217 ORTHO05D005561 3.4e-108 395.6 280 72.1
Migut.K00125 Erythranthe guttata HOM05D004217 ORTHO05D005561 4.4e-108 395.2 280 72.5
Eucgr.A00412 Eucalyptus grandis HOM05D004217 ORTHO05D005561 4.4e-108 395.2 289 70.6
EL10Ac3g07207 Beta vulgaris HOM05D004217 ORTHO05D005561 5.8e-108 394.8 296 68.6
AUR62030333 Chenopodium quinoa HOM05D004217 ORTHO05D005561 5.8e-108 394.8 301 68.1
HanXRQChr06g0176941 Helianthus annuus HOM05D004217 ORTHO05D005561 7.5e-108 394.4 282 72.3
AUR62031989 Chenopodium quinoa HOM05D004217 ORTHO05D005561 2.2e-107 392.9 301 67.8
HanXRQChr10g0316411 Helianthus annuus HOM05D004217 ORTHO05D005561 2.2e-107 392.9 282 72.0
PSO384G3185 Papaver somniferum HOM05D004217 ORTHO05D005561 2.2e-107 392.9 280 72.5
PGSC0003DMG400029850 Solanum tuberosum HOM05D004217 ORTHO05D005561 2.2e-107 392.9 280 71.4
Lsat_1_v5_gn_8_82561 Lactuca sativa HOM05D004217 ORTHO05D005561 3.7e-107 392.1 283 71.7
GSVIVG01034596001 Vitis vinifera HOM05D004217 ORTHO05D005561 8.3e-107 391.0 299 68.2
Peaxi162Scf01378g00115 Petunia axillaris HOM05D004217 ORTHO05D005561 1.1e-106 390.6 303 67.0
ATR0580G123 Amborella trichopoda HOM05D004217 ORTHO05D005561 1.4e-106 390.2 299 69.6
CDE07G0389 Ceratophyllum demersum HOM05D004217 ORTHO05D005561 1.4e-106 390.2 219 95.0
Oeu029495.1 Olea europaea HOM05D004217 ORTHO05D005561 1.4e-106 390.2 280 72.5
CsaV3_4G027820 Cucumis sativus L. HOM05D004217 ORTHO05D005561 1.9e-106 389.8 299 68.6
Peaxi162Scf00620g00012 Petunia axillaris HOM05D004217 ORTHO05D005561 5.4e-106 388.3 299 67.2
Atru.chr1.1483 Acer truncatum HOM05D004217 ORTHO05D005561 7.1e-106 387.9 280 71.4
Ah.04g151110 Amaranthus hybridus HOM05D004217 ORTHO05D005561 9.2e-106 387.5 301 67.1
CAN.G322.6 Capsicum annuum HOM05D004217 ORTHO05D005561 1.2e-105 387.1 288 69.4
Sed0000264 Sechium edule HOM05D004217 ORTHO05D005561 1.6e-105 386.7 298 68.1
Sc13g0001310 Simmondsia chinensis HOM05D004217 ORTHO05D005561 2.1e-105 386.3 294 68.0
MELO3C019047.2 Cucumis melo HOM05D004217 ORTHO05D005561 2.7e-105 386.0 299 67.9
CsaV3_3G041090 Cucumis sativus L. HOM05D004217 ORTHO05D005561 3.5e-105 385.6 299 67.9
DCAR_020547 Daucus carota HOM05D004217 ORTHO05D005561 4.6e-105 385.2 285 71.2
Sc25g0005400 Simmondsia chinensis HOM05D004217 ORTHO05D005561 1.3e-104 383.6 295 67.8
unitig_748.g7226 Utricularia gibba HOM05D004217 ORTHO05D005561 1.3e-104 383.6 286 68.2
CANSAT78G1576 Cannabis sativa HOM05D004217 ORTHO05D005561 3.9e-104 382.1 284 70.4
TAR369G0413 Trochodendron aralioides HOM05D004217 ORTHO05D005561 3.9e-104 382.1 300 69.0
CiPaw.10G038800 Carya illinoinensis HOM05D004217 ORTHO05D005561 1.5e-103 380.2 280 69.3
THA.LOC104824417 Tarenaya hassleriana HOM05D004217 ORTHO05D005561 1.5e-103 380.2 280 69.3
Cc06_g18810 Coffea canephora HOM05D004217 ORTHO05D005561 3.3e-103 379.0 304 66.1
Cfa016692 Carpinus fangiana HOM05D004217 ORTHO05D005561 7.3e-103 377.9 290 67.9
SalBow1G4717 Salvia bowleyana HOM05D004217 ORTHO05D005561 7.3e-103 377.9 302 67.5
Gohir.A03G048200 Gossypium hirsutum HOM05D004217 ORTHO05D005561 2.8e-102 375.9 266 72.9
Gohir.D03G072900 Gossypium hirsutum HOM05D004217 ORTHO05D005561 2.8e-102 375.9 265 72.8
Lalb_Chr04g0255801 Lupinus albus HOM05D004217 ORTHO05D005561 2.8e-102 375.9 293 67.6
PGR142G4280 Punica granatum HOM05D004217 ORTHO05D005561 3.6e-102 375.6 280 69.6
HPP92_018983 Vanilla planifolia HOM05D004217 ORTHO05D005561 3.6e-102 375.6 295 66.1
arahy.Tifrunner.gnm1.ann1.GAG45E Arachis hypogaea HOM05D004217 ORTHO05D005561 6.2e-102 374.8 277 70.0
RcHm_v2.0_Chr2g0125061 Rosa chinensis HOM05D004217 ORTHO05D005561 8.1e-102 374.4 296 66.2
Gohir.A03G146300 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.4e-101 373.6 265 72.5
arahy.Tifrunner.gnm1.ann1.35MU93 Arachis hypogaea HOM05D004217 ORTHO05D005561 1.8e-101 373.2 277 69.7
Gohir.D11G169000 Gossypium hirsutum HOM05D004217 ORTHO05D005561 3.1e-101 372.5 267 71.9
MD14G1084500 Malus domestica HOM05D004217 ORTHO05D005561 3.1e-101 372.5 280 68.6
Phvul.004G165200 Phaseolus vulgaris HOM05D004217 ORTHO05D005561 4.0e-101 372.1 276 69.6
VMungo0464G0563 Vigna mungo HOM05D004217 ORTHO05D005561 6.8e-101 371.3 276 69.6
FvH4_6g25170 Fragaria vesca HOM05D004217 ORTHO05D005561 8.9e-101 370.9 277 69.3
FAN14G1007 Fragaria x ananassa HOM05D004217 ORTHO05D005561 8.9e-101 370.9 277 69.3
MSTRG.15652 Avicennia marina HOM05D004217 ORTHO05D005561 1.2e-100 370.5 330 60.6
Ca_16232_v3 Cicer arietinum L. HOM05D004217 ORTHO05D005561 1.2e-100 370.5 286 67.8
ClCG04G004230 Citrullus lanatus HOM05D004217 ORTHO05D005561 1.2e-100 370.5 308 64.0
THA.LOC104803276 Tarenaya hassleriana HOM05D004217 ORTHO05D005561 1.5e-100 370.2 292 65.8
MD12G1092800 Malus domestica HOM05D004217 ORTHO05D005561 2.6e-100 369.4 280 67.9
Aa31LG5G11710 Aethionema arabicum HOM05D004217 ORTHO05D005561 4.4e-100 368.6 275 69.1
CARHR136470 Cardamine hirsuta HOM05D004217 ORTHO05D005561 4.4e-100 368.6 279 67.7
FAN09G3751 Fragaria x ananassa HOM05D004217 ORTHO05D005561 7.6e-100 367.9 277 69.0
Sp4g23650 Schrenkiella parvula HOM05D004217 ORTHO05D005561 7.6e-100 367.9 279 67.4
C03p27740 Brassica napus HOM05D004217 ORTHO05D005561 2.2e-99 366.3 279 66.7
Thhalv10017004m.g Eutrema salsugineum HOM05D004217 ORTHO05D005561 2.2e-99 366.3 279 67.4
TPR.G5939 Trifolium pratense HOM05D004217 ORTHO05D005561 2.2e-99 366.3 277 68.6
TPR.G15791 Trifolium pratense HOM05D004217 ORTHO05D005561 3.8e-99 365.5 277 68.2
A03p23240 Brassica napus HOM05D004217 ORTHO05D005561 4.9e-99 365.2 296 63.9
AT2G41350 Arabidopsis thaliana HOM05D004217 ORTHO05D005561 8.4e-99 364.4 279 67.0
BcaB01g03471 Brassica carinata HOM05D004217 ORTHO05D005561 1.1e-98 364.0 279 66.7
BcaC01g05340 Brassica carinata HOM05D004217 ORTHO05D005561 1.1e-98 364.0 279 66.3
Carub.0004s2365 Capsella rubella HOM05D004217 ORTHO05D005561 1.1e-98 364.0 279 66.3
Lj6g0025691 Lotus japonicus HOM05D004217 ORTHO05D005561 1.1e-98 364.0 274 68.2
Sabra06G0031800 Salix brachista HOM05D004217 ORTHO05D005561 2.4e-98 362.8 280 67.5
QL07p008431 Quercus lobata HOM05D004217 ORTHO05D005561 3.2e-98 362.5 325 60.0
BraA03t11543Z Brassica rapa HOM05D004217 ORTHO05D005561 1.2e-97 360.5 297 63.6
AL4G39350 Arabidopsis lyrata HOM05D004217 ORTHO05D005561 2.1e-97 359.8 276 67.8
Glyma.07G084800 Glycine max HOM05D004217 ORTHO05D005561 2.1e-97 359.8 276 68.1
Lalb_Chr17g0341031 Lupinus albus HOM05D004217 ORTHO05D005561 2.1e-97 359.8 272 67.6
Medtr3g079220 Medicago truncatula HOM05D004217 ORTHO05D005561 2.1e-97 359.8 279 67.4
BolC3t15143H Brassica oleracea HOM05D004217 ORTHO05D005561 2.7e-97 359.4 280 66.1
Haze_19719 Corylus avellana HOM05D004217 ORTHO05D005561 2.7e-97 359.4 327 60.6
Glyma.09G192100 Glycine max HOM05D004217 ORTHO05D005561 7.8e-97 357.8 276 67.8
Prupe.7G043700 Prunus persica HOM05D004217 ORTHO05D005561 7.8e-97 357.8 284 65.5
Gohir.D11G296900 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.3e-96 357.1 284 68.3
Gohir.A12G042000 Gossypium hirsutum HOM05D004217 ORTHO05D005561 5.1e-96 355.1 266 71.1
Psat5g112680 Pisum sativum HOM05D004217 ORTHO05D005561 1.1e-95 354.0 287 64.1
CSS0039334 Camellia sinensis var. sinensis HOM05D004217 ORTHO05D005561 1.9e-95 353.2 299 62.5
SMO118G0157 Selaginella moellendorffii HOM05D004217 ORTHO05D005561 9.6e-95 350.9 278 63.7
Gohir.A07G124200 Gossypium hirsutum HOM05D004217 ORTHO05D005561 5.8e-92 341.7 265 68.7
Pp3c1_31980 Physcomitrium patens HOM05D004217 ORTHO05D005561 1.7e-91 340.1 292 60.3
Actinidia20826 Actinidia chinensis HOM05D004217 ORTHO05D005561 2.2e-91 339.7 276 63.4
Gohir.A02G062500 Gossypium hirsutum HOM05D004217 ORTHO05D005561 3.5e-89 332.4 233 72.1
Nitab4.5_0000571g0060 Nicotiana tabacum HOM05D004217 ORTHO05D005561 6.0e-89 331.6 280 63.2
vmacro08529 Vaccinium macrocarpon HOM05D004217 ORTHO05D005561 6.0e-89 331.6 290 59.3
COL.COLO4_35807 Corchorus olitorius HOM05D004217 ORTHO05D005561 1.3e-88 330.5 288 60.8
Nitab4.5_0001874g0050 Nicotiana tabacum HOM05D004217 ORTHO05D005561 1.7e-88 330.1 288 61.5
Sc13g0001330 Simmondsia chinensis HOM05D004217 ORTHO05D005561 1.7e-88 330.1 254 67.3
Nitab4.5_0000636g0010 Nicotiana tabacum HOM05D004217 ORTHO05D005561 2.3e-88 329.7 278 62.9
QL07p008692 Quercus lobata HOM05D004217 ORTHO05D005561 1.5e-87 327.0 353 53.0
CAN.G541.30 Capsicum annuum HOM05D004217 ORTHO05D005561 3.3e-87 325.9 288 60.4
Rhsim04G0175000 Rhododendron simsii HOM05D004217 ORTHO05D005561 8.1e-86 321.2 288 58.7
AagrBONN_evm.TU.Sc2ySwM_362.1682 Anthoceros agrestis HOM05D004217 ORTHO05D005561 5.8e-84 315.1 277 55.6
SalBow6G4102 Salvia bowleyana HOM05D004217 ORTHO05D005561 6.4e-83 311.6 272 57.4
Hma1.2p1_0521F.1_g171490 Hydrangea macrophylla HOM05D004217 ORTHO05D005561 3.0e-80 302.8 212 75.5
Zm00001eb178240 Zea mays HOM05D004217 ORTHO05D005561 2.8e-78 296.2 301 55.5
DCAR_027531 Daucus carota HOM05D004217 ORTHO05D005561 1.1e-74 284.3 285 57.5
SEGI_06876 Sequoiadendron giganteum HOM05D004217 ORTHO05D005561 1.4e-74 283.9 272 53.7
Eucgr.A00321 Eucalyptus grandis HOM05D004217 ORTHO05D005561 2.4e-69 266.5 207 66.2
Os08g0240600 Oryza sativa ssp. japonica HOM05D004217 ORTHO05D005561 2.5e-66 256.5 252 57.5
EL10Ac6g14020 Beta vulgaris HOM05D004217 ORTHO05D005561 7.1e-66 255.0 267 54.3
Mapoly0239s0006 Marchantia polymorpha HOM05D004217 ORTHO05D005561 9.6e-63 244.6 284 48.6
SHI05064 Sapria himalayana HOM05D004217 ORTHO05D005561 4.8e-62 242.3 208 59.6
ECA236G0163 Erigeron canadensis HOM05D004217 ORTHO05D005561 1.8e-61 240.4 161 74.5
CBR_g38257 Chara braunii HOM05D004217 ORTHO05D005561 1.0e-56 224.6 245 46.1
Dinv08497 Davidia involucrata HOM05D004217 ORTHO05D005561 2.3e-56 223.4 174 69.0
Actinidia32317 Actinidia chinensis HOM05D004217 ORTHO05D005561 4.2e-50 202.6 161 67.1
Carub.0004s0112 Capsella rubella HOM05D004217 ORTHO05D005561 6.5e-35 152.1 168 54.2
A04p31520 Brassica napus HOM05D004217 ORTHO05D005561 2.3e-32 143.7 178 47.2
BraA04t18609Z Brassica rapa HOM05D004217 ORTHO05D005561 2.3e-32 143.7 178 47.2
C04p68950 Brassica napus HOM05D004217 ORTHO05D005561 4.0e-32 142.9 107 63.6
BolC4t28396H Brassica oleracea HOM05D004217 ORTHO05D005561 4.0e-32 142.9 107 63.6
SHI39628 Sapria himalayana HOM05D004217 ORTHO05D005561 8.2e-30 135.2 81 79.0
Sabra16G0048200 Salix brachista HOM05D000002 ORTHO05D000047 3.1e-29 133.3 137 54.7
BcaC02g12897 Brassica carinata HOM05D004217 ORTHO05D005561 1.3e-27 127.9 93 66.7
Peaxi162Scf01233g00007 Petunia axillaris HOM05D004217 ORTHO05D005561 3.0e-24 116.7 93 66.7
MBI15_g39623_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D016559 2.0e-23 114.0 77 71.4
Aqoxy5G00134 Aquilegia oxysepala HOM05D004217 ORTHO05D016559 1.2e-17 94.7 91 58.2
MD12G1067200 Malus domestica HOM05D004217 ORTHO05D005561 1.2e-17 94.7 83 55.4
AT2G21980 Arabidopsis thaliana HOM05D004217 ORTHO05D005561 5.7e-15 85.9 58 75.9
FAN17G2754 Fragaria x ananassa HOM05D004217 ORTHO05D005561 1.4e-13 81.3 52 80.8
arahy.Tifrunner.gnm1.ann1.XNH8SK Arachis hypogaea HOM05D004217 ORTHO05D016559 1.8e-13 80.9 81 48.1
arahy.Tifrunner.gnm1.ann1.CY1WZS Arachis hypogaea HOM05D004217 ORTHO05D016559 4.5e-12 76.3 71 52.1
arahy.Tifrunner.gnm1.ann1.505PCM Arachis hypogaea HOM05D003289 ORTHO05D016559 1.0e-11 75.1 107 41.1
FAN22G2236 Fragaria x ananassa HOM05D004217 ORTHO05D005561 1.3e-11 74.7 70 62.9
AL7G43680 Arabidopsis lyrata HOM05D004217 ORTHO05D026831 2.3e-11 73.9 68 55.9
arahy.Tifrunner.gnm1.ann1.5F2ED3 Arachis hypogaea HOM05D004217 ORTHO05D016559 2.3e-11 73.9 95 43.2
AL7G51080 Arabidopsis lyrata HOM05D004217 ORTHO05D080694 8.6e-11 72.0 68 55.9
ATR0564G208 Amborella trichopoda HOM05D004217 ORTHO05D064567 6.1e-09 65.9 113 37.2
arahy.Tifrunner.gnm1.ann1.2C13MW Arachis hypogaea HOM05D004217 ORTHO05D016559 8.0e-09 65.5 176 32.4
AL4G11300 Arabidopsis lyrata HOM05D004217 ORTHO05D005561 2.3e-08 63.9 58 55.2
BcaB04g18853 Brassica carinata HOM05D004217 ORTHO05D094331 1.5e-07 61.2 40 70.0
BcaB06g29630 Brassica carinata HOM05D004217 ORTHO05D095231 9.8e-07 58.5 39 69.2
BcaB06g29631 Brassica carinata HOM05D002050 ORTHO05D001949 9.8e-07 58.5 39 69.2


User provided reference genes

Program Settings