Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G1363 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 2.4e-251 871.7 433 100.0
MBI04_g08946_MAGBIO Magnolia biondii HOM05D003952 ORTHO05D005083 4.7e-207 724.5 431 83.8
QL02p037499 Quercus lobata HOM05D003952 ORTHO05D005083 1.5e-202 709.5 432 82.4
QL02p038017 Quercus lobata HOM05D003952 ORTHO05D005083 1.5e-202 709.5 432 82.4
TAR628G1191 Trochodendron aralioides HOM05D003952 ORTHO05D005083 1.7e-201 706.1 432 81.5
FvH4_2g13030 Fragaria vesca HOM05D003952 ORTHO05D005083 2.5e-200 702.2 432 81.7
Haze_17805 Corylus avellana HOM05D003952 ORTHO05D005083 4.2e-200 701.4 432 81.0
Cfa018280 Carpinus fangiana HOM05D003952 ORTHO05D005083 1.6e-199 699.5 432 80.8
Prupe.8G040600 Prunus persica HOM05D003952 ORTHO05D005083 1.6e-199 699.5 432 81.2
Atru.chr13.2009 Acer truncatum HOM05D003952 ORTHO05D005083 8.0e-199 697.2 432 81.0
RcHm_v2.0_Chr6g0274251 Rosa chinensis HOM05D003952 ORTHO05D005083 8.0e-199 697.2 432 81.2
Zm00001eb122110 Zea mays HOM05D003952 ORTHO05D005083 1.4e-198 696.4 434 79.5
Nn008s41421 Nelumbo nucifera HOM05D003952 ORTHO05D005083 3.0e-198 695.3 435 80.0
GSVIVG01001406001 Vitis vinifera HOM05D003952 ORTHO05D005083 5.2e-198 694.5 432 80.6
PSO170G5657 Papaver somniferum HOM05D003952 ORTHO05D005083 6.7e-198 694.1 432 78.9
Aqoxy6G00415 Aquilegia oxysepala HOM05D003952 ORTHO05D005083 8.8e-198 693.7 430 80.2
MD10G1034200 Malus domestica HOM05D003952 ORTHO05D005083 1.1e-197 693.3 432 80.3
Thecc.08G159400 Theobroma cacao HOM05D003952 ORTHO05D005083 4.4e-197 691.4 433 79.7
CiPaw.15G012400 Carya illinoinensis HOM05D003952 ORTHO05D005083 9.7e-197 690.3 431 80.3
CSS0032669 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 2.8e-196 688.7 432 79.6
Os01g0182600 Oryza sativa ssp. japonica HOM05D003952 ORTHO05D005083 2.8e-196 688.7 434 79.3
Potri.005G196700 Populus trichocarpa HOM05D003952 ORTHO05D005083 6.3e-196 687.6 431 80.0
Zm00001eb337600 Zea mays HOM05D003952 ORTHO05D005083 8.2e-196 687.2 434 78.8
Nn5g28824 Nelumbo nucifera HOM05D003952 ORTHO05D005083 1.1e-195 686.8 432 78.9
Phvul.007G083500 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 1.1e-195 686.8 432 78.5
MD05G1033400 Malus domestica HOM05D003952 ORTHO05D005083 1.8e-195 686.0 432 79.4
arahy.Tifrunner.gnm1.ann1.AF3FG0 Arachis hypogaea HOM05D003952 ORTHO05D005083 3.1e-195 685.3 431 78.2
FAN27G2428 Fragaria x ananassa HOM05D003952 ORTHO05D005083 1.2e-194 683.3 470 75.1
FAN24G3461 Fragaria x ananassa HOM05D003952 ORTHO05D005083 2.6e-194 682.2 470 74.9
Gohir.D02G068200 Gossypium hirsutum HOM05D003952 ORTHO05D005083 2.6e-194 682.2 433 79.7
Gorai.005G077100 Gossypium raimondii HOM05D003952 ORTHO05D005083 2.6e-194 682.2 433 79.7
vmacro01493 Vaccinium macrocarpon HOM05D003952 ORTHO05D005083 2.6e-194 682.2 438 78.8
arahy.Tifrunner.gnm1.ann1.SZWP5S Arachis hypogaea HOM05D003952 ORTHO05D005083 3.5e-194 681.8 431 78.0
FAN15G1441 Fragaria x ananassa HOM05D003952 ORTHO05D005083 4.5e-194 681.4 466 75.3
Gohir.A02G062600 Gossypium hirsutum HOM05D003952 ORTHO05D005083 4.5e-194 681.4 433 79.9
HPP92_008674 Vanilla planifolia HOM05D003952 ORTHO05D005083 4.5e-194 681.4 432 77.8
CSS0017406 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 7.7e-194 680.6 432 79.4
Dinv25899 Davidia involucrata HOM05D003952 ORTHO05D005083 1.0e-193 680.2 432 78.7
Rhsim11G0087700 Rhododendron simsii HOM05D003952 ORTHO05D005083 1.0e-193 680.2 448 77.5
Gohir.D05G248000 Gossypium hirsutum HOM05D003952 ORTHO05D005083 2.9e-193 678.7 433 79.0
Lalb_Chr06g0161721 Lupinus albus HOM05D003952 ORTHO05D005083 2.9e-193 678.7 429 79.3
Gorai.009G258800 Gossypium raimondii HOM05D003952 ORTHO05D005083 3.8e-193 678.3 433 79.0
arahy.Tifrunner.gnm1.ann1.2T81X8 Arachis hypogaea HOM05D003952 ORTHO05D005083 5.0e-193 677.9 455 74.9
arahy.Tifrunner.gnm1.ann1.5NL3D9 Arachis hypogaea HOM05D003952 ORTHO05D005083 5.0e-193 677.9 455 74.9
FAN20G1325 Fragaria x ananassa HOM05D003952 ORTHO05D005083 5.0e-193 677.9 470 74.7
Lj7A383T43 Lonicera japonica HOM05D003952 ORTHO05D005083 5.0e-193 677.9 432 78.5
Lalb_Chr02g0141571 Lupinus albus HOM05D003952 ORTHO05D005083 1.1e-192 676.8 431 78.7
CiPaw.16G008300 Carya illinoinensis HOM05D003952 ORTHO05D005083 1.9e-192 676.0 432 78.7
Gohir.A05G246500 Gossypium hirsutum HOM05D003952 ORTHO05D005083 1.9e-192 676.0 433 78.8
Cc10_g15270 Coffea canephora HOM05D003952 ORTHO05D005083 2.5e-192 675.6 431 77.7
HPP92_008686 Vanilla planifolia HOM05D003952 ORTHO05D005083 3.2e-192 675.2 432 77.3
ATR1120G094 Amborella trichopoda HOM05D003952 ORTHO05D005083 4.2e-192 674.9 404 82.4
Solyc04g071990.3 Solanum lycopersicum HOM05D003952 ORTHO05D005083 4.2e-192 674.9 431 78.4
VMungo0720G2354 Vigna mungo HOM05D003952 ORTHO05D005083 5.5e-192 674.5 432 77.8
Duzib093G1052 Durio zibethinus HOM05D003952 ORTHO05D005083 7.2e-192 674.1 433 78.8
Glyma.10G221500 Glycine max HOM05D003952 ORTHO05D005083 7.2e-192 674.1 432 77.3
TWI34G1640 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 7.2e-192 674.1 432 78.2
Duzib116G0427 Durio zibethinus HOM05D003952 ORTHO05D005083 9.4e-192 673.7 428 79.4
Lsat_1_v5_gn_9_42181 Lactuca sativa HOM05D003952 ORTHO05D005083 9.4e-192 673.7 436 77.1
Psat6g190640 Pisum sativum HOM05D003952 ORTHO05D005083 9.4e-192 673.7 432 77.8
Migut.C00380 Erythranthe guttata HOM05D003952 ORTHO05D005083 1.2e-191 673.3 432 77.5
Migut.N02951 Erythranthe guttata HOM05D003952 ORTHO05D005083 1.6e-191 672.9 431 77.7
Sopen04g027970 Solanum pennellii HOM05D003952 ORTHO05D005083 1.6e-191 672.9 431 78.4
CANSAT25G0323 Cannabis sativa HOM05D003952 ORTHO05D005083 2.1e-191 672.5 431 79.1
PGR042G0685 Punica granatum HOM05D003952 ORTHO05D005083 3.6e-191 671.8 431 78.0
TWI60G0338 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 3.6e-191 671.8 432 77.5
SalBow7G2315 Salvia bowleyana HOM05D003952 ORTHO05D005083 4.7e-191 671.4 431 77.5
TPR.G17028 Trifolium pratense HOM05D003952 ORTHO05D005083 4.7e-191 671.4 432 77.1
Peaxi162Scf00360g00418 Petunia axillaris HOM05D003952 ORTHO05D005083 6.1e-191 671.0 432 78.0
Potri.002G064400 Populus trichocarpa HOM05D003952 ORTHO05D005083 6.1e-191 671.0 431 78.7
Eucgr.F02686 Eucalyptus grandis HOM05D003952 ORTHO05D005083 8.0e-191 670.6 426 78.4
Lsat_1_v5_gn_6_101520 Lactuca sativa HOM05D003952 ORTHO05D005083 1.0e-190 670.2 433 77.6
CAN.G495.15 Capsicum annuum HOM05D003952 ORTHO05D005083 1.8e-190 669.5 431 78.9
Medtr1g098160 Medicago truncatula HOM05D003952 ORTHO05D005083 1.8e-190 669.5 432 76.9
MSTRG.22108 Avicennia marina HOM05D003952 ORTHO05D005083 8.8e-190 667.2 431 76.6
ClCG08G007370 Citrullus lanatus HOM05D003952 ORTHO05D005083 2.6e-189 665.6 432 77.8
Nitab4.5_0000872g0040 Nicotiana tabacum HOM05D003952 ORTHO05D005083 2.6e-189 665.6 419 79.2
Oeu051283.1 Olea europaea HOM05D003952 ORTHO05D005083 2.6e-189 665.6 431 76.6
HanXRQChr11g0320211 Helianthus annuus HOM05D003952 ORTHO05D005083 3.3e-189 665.2 432 76.6
TWI32G0799 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 3.3e-189 665.2 432 76.9
Glyma.16G163200 Glycine max HOM05D003952 ORTHO05D005083 9.7e-189 663.7 431 76.6
ECA246G0004 Erigeron canadensis HOM05D003952 ORTHO05D005083 1.3e-188 663.3 441 76.2
Phvul.004G088300 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 2.2e-188 662.5 432 76.4
CAN.G26.47 Capsicum annuum HOM05D003952 ORTHO05D005083 2.8e-188 662.1 434 76.3
MSTRG.24931 Avicennia marina HOM05D003952 ORTHO05D005083 3.7e-188 661.8 431 76.6
Carub.0001s2228 Capsella rubella HOM05D003952 ORTHO05D005083 4.8e-188 661.4 430 77.0
CARHR023130 Cardamine hirsuta HOM05D003952 ORTHO05D005083 4.8e-188 661.4 431 77.0
CsaV3_7G024490 Cucumis sativus L. HOM05D003952 ORTHO05D005083 4.8e-188 661.4 432 76.6
THA.LOC104810466 Tarenaya hassleriana HOM05D003952 ORTHO05D005083 4.8e-188 661.4 432 76.6
AL1G36320 Arabidopsis lyrata HOM05D003952 ORTHO05D005083 6.3e-188 661.0 430 77.2
AT1G22770 Arabidopsis thaliana HOM05D003952 ORTHO05D005083 6.3e-188 661.0 430 77.2
Aa31LG7G6730 Aethionema arabicum HOM05D003952 ORTHO05D005083 8.3e-188 660.6 431 77.3
Lj5g0005273 Lotus japonicus HOM05D003952 ORTHO05D005083 8.3e-188 660.6 431 77.0
MELO3C024067.2 Cucumis melo HOM05D003952 ORTHO05D005083 1.1e-187 660.2 432 76.9
Oeu002069.1 Olea europaea HOM05D003952 ORTHO05D005083 1.4e-187 659.8 467 72.2
Sabra05G0149800 Salix brachista HOM05D003952 ORTHO05D005083 3.1e-187 658.7 485 70.7
CsaV3_6G005020 Cucumis sativus L. HOM05D003952 ORTHO05D005083 5.3e-187 657.9 432 76.9
DCAR_001164 Daucus carota HOM05D003952 ORTHO05D005083 5.3e-187 657.9 431 77.0
Sed0019934 Sechium edule HOM05D003952 ORTHO05D005083 5.3e-187 657.9 433 76.9
Thhalv10006603m.g Eutrema salsugineum HOM05D003952 ORTHO05D005083 1.2e-186 656.8 431 76.6
A09p41970 Brassica napus HOM05D003952 ORTHO05D005083 3.5e-186 655.2 429 77.4
BcaNung06971 Brassica carinata HOM05D003952 ORTHO05D005083 5.9e-186 654.4 431 77.3
C05p21880 Brassica napus HOM05D003952 ORTHO05D005083 5.9e-186 654.4 429 77.4
Sc20g0003770 Simmondsia chinensis HOM05D003952 ORTHO05D005083 2.2e-185 652.5 432 76.2
Sopen12g029310 Solanum pennellii HOM05D003952 ORTHO05D005083 3.8e-185 651.7 416 78.1
Sp1g20280 Schrenkiella parvula HOM05D003952 ORTHO05D005083 5.0e-185 651.4 431 76.1
Nitab4.5_0004270g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 6.5e-185 651.0 433 76.0
MELO3C030034.2 Cucumis melo HOM05D003952 ORTHO05D005083 1.9e-184 649.4 432 76.2
Sed0012183 Sechium edule HOM05D003952 ORTHO05D005083 4.2e-184 648.3 432 75.7
Solyc12g056650.2 Solanum lycopersicum HOM05D003952 ORTHO05D005083 5.5e-184 647.9 416 77.9
Nitab4.5_0000099g0200 Nicotiana tabacum HOM05D003952 ORTHO05D005083 8.0e-183 644.0 450 74.0
unitig_747.g21544 Utricularia gibba HOM05D003952 ORTHO05D005083 1.0e-182 643.7 431 74.9
Sed0012813 Sechium edule HOM05D003952 ORTHO05D005083 1.8e-182 642.9 426 76.8
Lalb_Chr01g0009771 Lupinus albus HOM05D003952 ORTHO05D005083 4.0e-182 641.7 431 74.0
Glyma.20G170000 Glycine max HOM05D003952 ORTHO05D005083 1.2e-181 640.2 432 74.1
SGA_v2.0_scaffold133G34641 Striga asiatica HOM05D003952 ORTHO05D005083 5.7e-181 637.9 431 75.4
unitig_32.g11167 Utricularia gibba HOM05D003952 ORTHO05D005083 9.8e-181 637.1 431 74.0
Peaxi162Scf00160g01744 Petunia axillaris HOM05D003952 ORTHO05D005083 2.2e-180 636.0 404 78.0
EL10Ac1g01605 Beta vulgaris HOM05D003952 ORTHO05D005083 1.1e-179 633.6 484 68.8
Ca_10663_v3 Cicer arietinum L. HOM05D003952 ORTHO05D005083 4.1e-179 631.7 471 68.8
Sabra02G0051500 Salix brachista HOM05D003952 ORTHO05D005083 5.4e-179 631.3 488 67.6
AUR62034894 Chenopodium quinoa HOM05D003952 ORTHO05D005083 3.5e-178 628.6 483 68.1
ClCG09G010210 Citrullus lanatus HOM05D003952 ORTHO05D005083 2.8e-175 619.0 412 76.5
Nitab4.5_0005673g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 2.4e-171 605.9 420 74.8
SMO367G0140 Selaginella moellendorffii HOM05D003952 ORTHO05D005083 2.3e-161 572.8 422 66.8
Ciclev10004044m.g Citrus clementina HOM05D003952 ORTHO05D005083 3.3e-160 568.9 360 79.4
VMungo0464G1293 Vigna mungo HOM05D003952 ORTHO05D005083 4.7e-159 565.1 361 77.6
AUR62026637 Chenopodium quinoa HOM05D003952 ORTHO05D005083 2.9e-156 555.8 361 78.1
Mapoly0019s0145 Marchantia polymorpha HOM05D003952 ORTHO05D005083 2.0e-149 533.1 419 63.2
Manes.18G095000 Manihot esculenta HOM05D003952 ORTHO05D005083 1.5e-144 516.9 432 65.0
CSS0023419 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 3.8e-140 502.3 434 64.1
SalBow6G3936 Salvia bowleyana HOM05D003952 ORTHO05D005083 7.8e-138 494.6 406 65.0
Ah.05g168180 Amaranthus hybridus HOM05D003952 ORTHO05D005083 3.9e-137 492.3 431 62.4
TAR381G1674 Trochodendron aralioides HOM05D003952 ORTHO05D005083 1.9e-136 490.0 308 78.9
BraA09t39685Z Brassica rapa HOM05D003952 ORTHO05D005083 9.6e-128 461.1 308 75.0
BolC5t30883H Brassica oleracea HOM05D003952 ORTHO05D005083 1.6e-127 460.3 308 75.0
Actinidia29549 Actinidia chinensis HOM05D003952 ORTHO05D005083 2.5e-115 419.9 420 56.9
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 7.4e-112 408.3 283 71.4
Actinidia04747 Actinidia chinensis HOM05D003952 ORTHO05D005083 6.9e-110 401.7 431 53.6
Lj4C703T11 Lonicera japonica HOM05D003952 ORTHO05D005083 6.7e-89 332.0 189 88.4
Cpa.g.sc26.81 Carica papaya HOM05D003952 ORTHO05D005083 2.4e-86 323.6 229 69.9
Lj4A703G54 Lonicera japonica HOM05D003952 ORTHO05D005083 5.5e-75 285.8 199 71.4
COL.COLO4_13782 Corchorus olitorius HOM05D003952 ORTHO05D005083 6.3e-71 272.3 182 73.6
COL.COLO4_13783 Corchorus olitorius HOM05D003952 ORTHO05D005083 1.4e-70 271.2 298 55.7
Lsat_1_v5_gn_5_129380 Lactuca sativa HOM05D003952 ORTHO05D015589 3.1e-62 243.4 181 70.2
PGSC0003DMG400018791 Solanum tuberosum HOM05D003952 ORTHO05D005083 1.5e-56 224.6 141 78.7
Lsat_1_v5_gn_3_78320 Lactuca sativa HOM05D003952 ORTHO05D005083 4.6e-53 213.0 139 77.7
CBR_g22347 Chara braunii HOM05D003952 ORTHO05D005083 1.7e-52 211.1 262 46.2
CANSAT25G0696 Cannabis sativa HOM05D003952 ORTHO05D005083 2.0e-48 197.6 125 80.8
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 6.4e-47 192.6 132 72.0
Duzib041G0651 Durio zibethinus HOM05D003952 ORTHO05D005083 7.1e-38 162.5 92 89.1
TAR381G0458 Trochodendron aralioides HOM05D003952 ORTHO05D005083 2.1e-21 107.8 73 72.6
Sopen10g022170 Solanum pennellii HOM05D003952 ORTHO05D011221 6.0e-21 106.3 72 70.8
Oeu022058.1 Olea europaea HOM05D003952 ORTHO05D005083 1.3e-20 105.1 70 72.9
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 8.7e-20 102.4 79 68.4
Cpa.g.sc26.82 Carica papaya HOM05D003952 ORTHO05D005083 2.5e-19 100.9 66 78.8
VMungo0464G1608 Vigna mungo HOM05D003952 ORTHO05D005083 8.1e-18 95.9 66 71.2
TPR.G25241 Trifolium pratense HOM05D003952 ORTHO05D048898 8.4e-15 85.9 59 67.8
Lsat_1_v5_gn_7_62680 Lactuca sativa HOM05D003952 ORTHO05D015589 2.4e-14 84.3 78 59.0
Lsat_1_v5_gn_3_73081 Lactuca sativa HOM05D003952 ORTHO05D015589 4.2e-14 83.6 47 78.7
Psat1g148000 Pisum sativum HOM05D005005 ORTHO05D004359 9.3e-06 55.8 168 29.2


User provided reference genes

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