Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G1344 Ceratophyllum demersum HOM05D004534 ORTHO05D005413 1.3e-235 819.3 399 100.0
PSO384G4947 Papaver somniferum HOM05D004534 ORTHO05D005413 5.0e-131 471.9 394 61.2
Nn2g10612 Nelumbo nucifera HOM05D004534 ORTHO05D005413 6.5e-131 471.5 391 60.1
PSO339G4951 Papaver somniferum HOM05D004534 ORTHO05D005413 1.1e-130 470.7 400 62.2
GSVIVG01016358001 Vitis vinifera HOM05D004534 ORTHO05D005413 3.2e-130 469.2 362 63.5
Dinv32819 Davidia involucrata HOM05D004534 ORTHO05D005413 2.3e-128 463.0 399 61.2
QL01p035546 Quercus lobata HOM05D004534 ORTHO05D005413 4.0e-128 462.2 411 60.1
Prupe.2G220600 Prunus persica HOM05D004534 ORTHO05D005413 1.2e-127 460.7 362 62.7
Actinidia03016 Actinidia chinensis HOM05D004534 ORTHO05D005413 1.7e-126 456.8 393 60.1
Hma1.2p1_2042F.1_g312230 Hydrangea macrophylla HOM05D004534 ORTHO05D005413 2.2e-126 456.4 371 62.5
AL5G24380 Arabidopsis lyrata HOM05D004534 ORTHO05D005413 4.9e-126 455.3 370 62.2
Manes.11G138500 Manihot esculenta HOM05D004534 ORTHO05D005413 6.3e-126 454.9 401 58.4
Thhalv10002577m.g Eutrema salsugineum HOM05D004534 ORTHO05D005413 8.3e-126 454.5 374 61.0
Phvul.L001232 Phaseolus vulgaris HOM05D004534 ORTHO05D005413 8.3e-126 454.5 376 60.4
CsaV3_1G012750 Cucumis sativus L. HOM05D004534 ORTHO05D005413 1.1e-125 454.1 398 58.0
Cfa001577 Carpinus fangiana HOM05D004534 ORTHO05D005413 1.4e-125 453.8 397 59.4
Cfa011397 Carpinus fangiana HOM05D004534 ORTHO05D005413 1.4e-125 453.8 360 61.7
Glyma.13G330000 Glycine max HOM05D004534 ORTHO05D005413 1.4e-125 453.8 376 59.6
MELO3C026849.2 Cucumis melo HOM05D004534 ORTHO05D005413 1.8e-125 453.4 382 59.7
Potri.008G045700 Populus trichocarpa HOM05D004534 ORTHO05D005413 4.1e-125 452.2 370 61.4
A06p21280 Brassica napus HOM05D004534 ORTHO05D005413 5.4e-125 451.8 373 60.3
BraA06t25216Z Brassica rapa HOM05D004534 ORTHO05D005413 5.4e-125 451.8 373 60.3
THA.LOC104814850 Tarenaya hassleriana HOM05D004534 ORTHO05D005413 5.4e-125 451.8 382 58.6
GSVIVG01025090001 Vitis vinifera HOM05D004534 ORTHO05D005413 5.4e-125 451.8 378 60.1
TWI31G1398 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 9.1e-125 451.1 401 58.9
AT3G45740 Arabidopsis thaliana HOM05D004534 ORTHO05D005413 1.2e-124 450.7 374 61.0
ECA233G2770 Erigeron canadensis HOM05D004534 ORTHO05D000452 1.6e-124 450.3 399 57.1
Aa31LG4G14970 Aethionema arabicum HOM05D004534 ORTHO05D005413 2.0e-124 449.9 363 62.3
CARHR149920 Cardamine hirsuta HOM05D004534 ORTHO05D005413 2.0e-124 449.9 374 60.7
RcHm_v2.0_Chr1g0364391 Rosa chinensis HOM05D004534 ORTHO05D005413 2.7e-124 449.5 361 60.9
Dinv31374 Davidia involucrata HOM05D004534 ORTHO05D005413 3.5e-124 449.1 364 61.3
Psat5g281360 Pisum sativum HOM05D004534 ORTHO05D005413 4.5e-124 448.7 380 59.7
BolC3t19273H Brassica oleracea HOM05D004534 ORTHO05D005413 5.9e-124 448.4 373 60.3
Sp5g15770 Schrenkiella parvula HOM05D004534 ORTHO05D005413 5.9e-124 448.4 389 59.4
BcaC01g01956 Brassica carinata HOM05D004534 ORTHO05D005413 1.3e-123 447.2 373 60.3
C03p70180 Brassica napus HOM05D004534 ORTHO05D005413 1.3e-123 447.2 373 60.3
Ciclev10030338m.g Citrus clementina HOM05D004534 ORTHO05D005413 1.3e-123 447.2 378 58.7
CSS0028612 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 1.7e-123 446.8 397 57.9
Cpa.g.sc139.34 Carica papaya HOM05D004534 ORTHO05D005413 2.9e-123 446.0 377 58.4
Lsat_1_v5_gn_8_20980 Lactuca sativa HOM05D004534 ORTHO05D005413 3.8e-123 445.7 391 58.1
Potri.010G216000 Populus trichocarpa HOM05D004534 ORTHO05D005413 3.8e-123 445.7 377 60.5
Sed0013966 Sechium edule HOM05D004534 ORTHO05D005413 5.0e-123 445.3 400 58.2
VMungo1080G0465 Vigna mungo HOM05D004534 ORTHO05D005413 6.6e-123 444.9 376 59.3
Zm00001eb397220 Zea mays HOM05D004534 ORTHO05D005413 6.6e-123 444.9 371 59.3
Atru.chr3.3749 Acer truncatum HOM05D004534 ORTHO05D005413 8.6e-123 444.5 402 57.2
CiPaw.01G277800 Carya illinoinensis HOM05D004534 ORTHO05D005413 1.1e-122 444.1 370 60.5
PGR102G1844 Punica granatum HOM05D004534 ORTHO05D005413 1.9e-122 443.4 400 57.0
Ciclev10031838m.g Citrus clementina HOM05D004534 ORTHO05D005413 2.5e-122 443.0 401 57.6
ATR0582G124 Amborella trichopoda HOM05D004534 ORTHO05D005413 3.3e-122 442.6 373 59.2
TWI38G2053 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 3.3e-122 442.6 362 60.5
Os03g0284500 Oryza sativa ssp. japonica HOM05D004534 ORTHO05D005413 4.2e-122 442.2 361 59.0
Thecc.10G065400 Theobroma cacao HOM05D004534 ORTHO05D005413 4.2e-122 442.2 364 61.5
Aqoxy4G03153 Aquilegia oxysepala HOM05D004534 ORTHO05D005413 5.6e-122 441.8 408 57.8
Lalb_Chr24g0394391 Lupinus albus HOM05D004534 ORTHO05D005413 5.6e-122 441.8 375 58.9
arahy.Tifrunner.gnm1.ann1.AW7LWX Arachis hypogaea HOM05D004534 ORTHO05D005413 9.5e-122 441.0 365 60.0
arahy.Tifrunner.gnm1.ann1.NM19P7 Arachis hypogaea HOM05D004534 ORTHO05D005413 1.2e-121 440.7 365 59.7
TPR.G11635 Trifolium pratense HOM05D004534 ORTHO05D005413 1.2e-121 440.7 375 59.7
CANSAT54G1456 Cannabis sativa HOM05D004534 ORTHO05D005413 1.6e-121 440.3 400 57.0
PGR044G2491 Punica granatum HOM05D004534 ORTHO05D005413 1.6e-121 440.3 403 57.1
Rhsim01G0222900 Rhododendron simsii HOM05D004534 ORTHO05D005413 1.6e-121 440.3 380 60.8
Atru.chr12.616 Acer truncatum HOM05D004534 ORTHO05D005413 2.8e-121 439.5 411 56.0
HanXRQChr08g0219701 Helianthus annuus HOM05D004534 ORTHO05D005413 3.6e-121 439.1 370 60.5
MD11G1120100 Malus domestica HOM05D004534 ORTHO05D005413 3.6e-121 439.1 381 59.3
Medtr2g095830 Medicago truncatula HOM05D004534 ORTHO05D005413 1.8e-120 436.8 399 55.4
Haze_16951 Corylus avellana HOM05D004534 ORTHO05D005413 3.0e-120 436.0 373 59.2
CSS0009646 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 5.2e-120 435.3 373 60.3
HPP92_003600 Vanilla planifolia HOM05D004534 ORTHO05D005413 5.2e-120 435.3 376 58.0
Gorai.009G315700 Gossypium raimondii HOM05D004534 ORTHO05D005413 3.4e-119 432.6 392 56.9
Lj3g0025326 Lotus japonicus HOM05D004534 ORTHO05D005413 4.4e-119 432.2 398 56.8
DCAR_018857 Daucus carota HOM05D004534 ORTHO05D005413 7.5e-119 431.4 361 60.4
COL.COLO4_23775 Corchorus olitorius HOM05D004534 ORTHO05D005413 1.3e-118 430.6 363 60.1
Gohir.D05G298500 Gossypium hirsutum HOM05D004534 ORTHO05D005413 1.7e-118 430.3 392 56.9
Nitab4.5_0000270g0130 Nicotiana tabacum HOM05D004534 ORTHO05D005413 2.2e-118 429.9 390 57.4
CAN.G394.3 Capsicum annuum HOM05D004534 ORTHO05D005413 2.9e-118 429.5 392 57.7
MD07G1181700 Malus domestica HOM05D004534 ORTHO05D005413 4.9e-118 428.7 352 59.1
PGSC0003DMG402006611 Solanum tuberosum HOM05D004534 ORTHO05D005413 4.9e-118 428.7 386 57.0
RcHm_v2.0_Chr5g0061761 Rosa chinensis HOM05D004534 ORTHO05D005413 1.1e-117 427.6 399 56.1
Migut.F02016 Erythranthe guttata HOM05D004534 ORTHO05D005413 1.4e-117 427.2 401 55.6
Solyc06g075540.3 Solanum lycopersicum HOM05D004534 ORTHO05D005413 1.4e-117 427.2 386 56.5
Nitab4.5_0004774g0020 Nicotiana tabacum HOM05D004534 ORTHO05D005413 1.8e-117 426.8 385 57.9
MSTRG.18620 Avicennia marina HOM05D004534 ORTHO05D005413 5.4e-117 425.2 370 57.8
FAN06G4936 Fragaria x ananassa HOM05D004534 ORTHO05D005413 5.4e-117 425.2 417 52.8
Ca_01369_v3 Cicer arietinum L. HOM05D004534 ORTHO05D005413 2.0e-116 423.3 364 58.0
Peaxi162Scf00072g00025 Petunia axillaris HOM05D004534 ORTHO05D005413 2.0e-116 423.3 359 60.4
FAN11G3381 Fragaria x ananassa HOM05D004534 ORTHO05D005413 6.6e-115 418.3 388 55.2
Thecc.09G335300 Theobroma cacao HOM05D004534 ORTHO05D005413 8.6e-115 417.9 392 54.8
FvH4_3g34110 Fragaria vesca HOM05D004534 ORTHO05D005413 1.5e-114 417.2 388 55.2
Gohir.A08G000096 Gossypium hirsutum HOM05D004534 ORTHO05D005413 1.5e-114 417.2 364 58.5
Gohir.D08G009000 Gossypium hirsutum HOM05D004534 ORTHO05D005413 1.9e-114 416.8 396 55.3
EL10Ac2g03539 Beta vulgaris HOM05D004534 ORTHO05D005413 2.5e-114 416.4 379 55.4
Nitab4.5_0000561g0030 Nicotiana tabacum HOM05D004534 ORTHO05D005413 3.3e-114 416.0 367 56.7
vmacro14490 Vaccinium macrocarpon HOM05D004534 ORTHO05D005413 7.3e-114 414.8 439 52.6
Cc01_g11880 Coffea canephora HOM05D004534 ORTHO05D005413 2.8e-113 412.9 374 58.0
CsaV3_5G026040 Cucumis sativus L. HOM05D004534 ORTHO05D005413 5.2e-112 408.7 366 57.1
Peaxi162Scf01024g00128 Petunia axillaris HOM05D004534 ORTHO05D005413 1.2e-111 407.5 388 54.1
FAN21G3213 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.7e-110 403.7 396 53.5
EL10Ac7g15886 Beta vulgaris HOM05D004534 ORTHO05D005413 4.9e-110 402.1 419 52.7
Migut.D02166 Erythranthe guttata HOM05D004534 ORTHO05D005413 1.4e-109 400.6 359 57.1
BcaB01g01071 Brassica carinata HOM05D004534 ORTHO05D005413 2.4e-109 399.8 298 64.8
Hund18962 Selenicereus undatus HOM05D004534 ORTHO05D005413 5.4e-109 398.7 390 53.1
MELO3C025495.2 Cucumis melo HOM05D004534 ORTHO05D005413 2.7e-108 396.4 384 54.7
Sabra08G0032000 Salix brachista HOM05D004534 ORTHO05D005413 2.3e-107 393.3 366 55.7
FAN03G3228 Fragaria x ananassa HOM05D004534 ORTHO05D005413 6.6e-107 391.7 427 49.9
Sc06g0008140 Simmondsia chinensis HOM05D004534 ORTHO05D005413 6.6e-107 391.7 374 54.3
AUR62009701 Chenopodium quinoa HOM05D004534 ORTHO05D005413 8.6e-107 391.3 358 55.9
unitig_37.g12680 Utricularia gibba HOM05D004534 ORTHO05D005413 5.6e-106 388.7 358 55.0
Lj1A926G31 Lonicera japonica HOM05D004534 ORTHO05D005413 6.2e-105 385.2 375 56.0
Manes.10G040600 Manihot esculenta HOM05D004534 ORTHO05D005413 1.5e-103 380.6 371 54.2
FAN01G1783 Fragaria x ananassa HOM05D004534 ORTHO05D005413 3.2e-101 372.9 430 48.1
Ah.10g033090 Amaranthus hybridus HOM05D004534 ORTHO05D005413 2.1e-100 370.2 356 53.4
QL08p057247 Quercus lobata HOM05D004534 ORTHO05D005413 3.5e-100 369.4 559 40.6
CSS0050279 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 1.0e-99 367.9 369 55.0
Duzib106G1068 Durio zibethinus HOM05D004534 ORTHO05D005413 1.7e-99 367.1 361 54.0
Gohir.A05G298800 Gossypium hirsutum HOM05D004534 ORTHO05D005413 1.6e-97 360.5 272 62.1
FAN25G2491 Fragaria x ananassa HOM05D004534 ORTHO05D005413 2.1e-97 360.1 419 47.7
Gorai.004G002200 Gossypium raimondii HOM05D004534 ORTHO05D005413 2.1e-97 360.1 317 57.7
Oeu055059.2 Olea europaea HOM05D004534 ORTHO05D005413 2.8e-97 359.8 335 55.5
Lj1A180G32 Lonicera japonica HOM05D004534 ORTHO05D005413 3.6e-97 359.4 298 60.1
Sabra10G0167000 Salix brachista HOM05D004534 ORTHO05D005413 4.7e-97 359.0 389 51.2
Nitab4.5_0000830g0040 Nicotiana tabacum HOM05D004534 ORTHO05D005413 3.1e-96 356.3 362 51.1
FAN06G3998 Fragaria x ananassa HOM05D004534 ORTHO05D005413 3.4e-95 352.8 546 40.3
AUR62036245 Chenopodium quinoa HOM05D004534 ORTHO05D005413 2.2e-94 350.1 370 51.1
TAR633G1279 Trochodendron aralioides HOM05D004534 ORTHO05D005413 2.5e-90 336.7 288 60.8
Oeu051854.2 Olea europaea HOM05D004534 ORTHO05D005413 2.6e-87 326.6 457 43.1
AUR62036013 Chenopodium quinoa HOM05D004534 ORTHO05D005413 4.9e-86 322.4 378 45.0
Sed0004393 Sechium edule HOM05D004534 ORTHO05D005413 1.1e-85 321.2 376 49.5
Carub.0005s1159 Capsella rubella HOM05D004534 ORTHO05D005413 7.1e-85 318.5 240 65.0
Mapoly0029s0123 Marchantia polymorpha HOM05D004534 ORTHO05D005413 2.1e-84 317.0 380 45.5
FAN16G0790 Fragaria x ananassa HOM05D004534 ORTHO05D005413 2.7e-84 316.6 412 45.6
FvH4_7g20500 Fragaria vesca HOM05D004534 ORTHO05D005413 3.3e-82 309.7 286 56.6
CiPaw.13G104100 Carya illinoinensis HOM05D004534 ORTHO05D005413 1.6e-81 307.4 286 55.9
Pp3c16_8740 Physcomitrium patens HOM05D004534 ORTHO05D005413 1.6e-81 307.4 383 44.1
Prupe.6G090300 Prunus persica HOM05D004534 ORTHO05D005413 1.6e-81 307.4 281 58.0
SGA_v2.0_scaffold61G21215 Striga asiatica HOM05D004534 ORTHO05D005413 7.6e-79 298.5 242 59.5
SMO118G0317 Selaginella moellendorffii HOM05D004534 ORTHO05D005413 1.3e-78 297.7 360 44.4
COL.COLO4_18394 Corchorus olitorius HOM05D004534 ORTHO05D005413 3.0e-75 286.6 290 51.4
Ciclev10032311m.g Citrus clementina HOM05D004534 ORTHO05D005413 1.7e-70 270.8 285 51.9
Sopen06g031920 Solanum pennellii HOM05D004534 ORTHO05D005413 1.4e-69 267.7 188 69.7
ClCG09G020370 Citrullus lanatus HOM05D004534 ORTHO05D005413 5.5e-69 265.8 378 41.5
MBI18_g24932_MAGBIO Magnolia biondii HOM05D004534 ORTHO05D005413 1.2e-68 264.6 547 33.8
FAN10G0821 Fragaria x ananassa HOM05D004534 ORTHO05D005413 3.1e-64 250.0 355 42.5
Cc09_g02390 Coffea canephora HOM05D004534 ORTHO05D005413 4.0e-64 249.6 193 63.2
AagrBONN_evm.TU.Sc2ySwM_228.5090 Anthoceros agrestis HOM05D004534 ORTHO05D005413 7.2e-53 212.2 185 54.1
Cpa.g.sc1.278 Carica papaya HOM05D004534 ORTHO05D005413 8.7e-51 205.3 264 44.7
CBR_g24062 Chara braunii HOM05D004534 ORTHO05D005413 8.7e-51 205.3 302 39.4
Nitab4.5_0000830g0060 Nicotiana tabacum HOM05D004534 ORTHO05D005413 2.0e-39 167.5 173 51.4
Cfa024137 Carpinus fangiana HOM05D004534 ORTHO05D005413 2.2e-33 147.5 421 28.7
Cre01.g013250 Chlamydomonas reinhardtii HOM05D004534 ORTHO05D005413 2.4e-32 144.1 303 29.7
PRCOL_00005152 Prasinoderma coloniale HOM05D004534 ORTHO05D005413 4.5e-31 139.8 289 31.8
Cc09_g02400 Coffea canephora HOM05D004534 ORTHO05D005413 8.8e-27 125.6 146 48.6
VMungo0464G2039 Vigna mungo HOM05D004534 ORTHO05D005413 1.1e-26 125.2 94 61.7
AUR62035991 Chenopodium quinoa HOM05D004534 ORTHO05D005413 4.4e-26 123.2 115 47.8
Glyma.15G044000 Glycine max HOM05D004534 ORTHO05D005413 1.1e-21 108.6 81 59.3
RcHm_v2.0_Chr1g0364361 Rosa chinensis HOM05D003391 ORTHO05D005413 6.3e-17 92.8 56 76.8
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 7.0e-16 89.4 63 63.5
RcHm_v2.0_Chr5g0046071 Rosa chinensis HOM05D004534 ORTHO05D005413 8.5e-14 82.4 47 76.6
Actinidia38238 Actinidia chinensis HOM05D004534 ORTHO05D005413 1.7e-09 68.2 135 34.8
AagrBONN_evm.TU.Sc2ySwM_117.2640 Anthoceros agrestis HOM05D012537 ORTHO05D009535 6.3e-09 66.2 35 74.3
Nitab4.5_0000830g0070 Nicotiana tabacum HOM05D004534 ORTHO05D005413 1.4e-08 65.1 38 73.7


User provided reference genes

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