Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G1284 Ceratophyllum demersum HOM05D003540 ORTHO05D004012 4.8e-73 277.7 139 100.0
Nn1g05484 Nelumbo nucifera HOM05D003540 ORTHO05D004012 1.9e-21 106.3 73 74.0
MBI02_g18294_MAGBIO Magnolia biondii HOM05D003540 ORTHO05D004012 3.1e-19 99.0 81 65.4
CDE05G3432 Ceratophyllum demersum HOM05D003540 ORTHO05D004012 4.0e-19 98.6 81 63.0
MBI06_g18789_MAGBIO Magnolia biondii HOM05D003540 ORTHO05D004012 4.0e-19 98.6 73 67.1
TAR625G0842 Trochodendron aralioides HOM05D003540 ORTHO05D004012 6.8e-19 97.8 81 61.7
CSS0040517 Camellia sinensis var. sinensis HOM05D003540 ORTHO05D004012 8.9e-19 97.4 71 69.0
CSS0047709 Camellia sinensis var. sinensis HOM05D003540 ORTHO05D004012 8.9e-19 97.4 71 69.0
Cc10_g15500 Coffea canephora HOM05D003540 ORTHO05D004012 2.6e-18 95.9 84 63.1
CSS0040126 Camellia sinensis var. sinensis HOM05D003540 ORTHO05D004012 3.4e-18 95.5 71 69.0
Sc01g0000960 Simmondsia chinensis HOM05D003540 ORTHO05D004012 5.8e-18 94.7 73 63.0
Solyc04g074940.4 Solanum lycopersicum HOM05D003540 ORTHO05D004012 7.6e-18 94.4 71 64.8
Sopen04g029890 Solanum pennellii HOM05D003540 ORTHO05D004012 7.6e-18 94.4 71 64.8
Dinv44828 Davidia involucrata HOM05D003540 ORTHO05D004012 9.9e-18 94.0 78 62.8
CANSAT25G0001 Cannabis sativa HOM05D003540 ORTHO05D004012 1.3e-17 93.6 79 63.3
Os07g0577900 Oryza sativa ssp. japonica HOM05D003540 ORTHO05D004012 1.3e-17 93.6 71 66.2
Peaxi162Scf00139g00825 Petunia axillaris HOM05D003540 ORTHO05D004012 1.3e-17 93.6 71 67.6
vmacro21941 Vaccinium macrocarpon HOM05D003540 ORTHO05D004012 1.3e-17 93.6 54 85.2
MSTRG.11484 Avicennia marina HOM05D003540 ORTHO05D004012 2.2e-17 92.8 63 77.8
CSS0021893 Camellia sinensis var. sinensis HOM05D003540 ORTHO05D004012 3.8e-17 92.0 69 68.1
Rhsim07G0209200 Rhododendron simsii HOM05D003540 ORTHO05D004012 3.8e-17 92.0 73 64.4
Zm00001eb325480 Zea mays HOM05D003540 ORTHO05D004012 3.8e-17 92.0 71 66.2
Os03g0187700 Oryza sativa ssp. japonica HOM05D003540 ORTHO05D004012 4.9e-17 91.7 71 64.8
Oeu024713.1 Olea europaea HOM05D003540 ORTHO05D004012 6.4e-17 91.3 69 66.7
Rhsim06G0075200 Rhododendron simsii HOM05D003540 ORTHO05D004012 6.4e-17 91.3 71 66.2
SalBow6G0357 Salvia bowleyana HOM05D003540 ORTHO05D004012 6.4e-17 91.3 63 76.2
SalBow7G2649 Salvia bowleyana HOM05D003540 ORTHO05D004012 6.4e-17 91.3 63 76.2
Solyc02g063075.1 Solanum lycopersicum HOM05D003540 ORTHO05D004012 6.4e-17 91.3 71 63.4
Sopen02g014150 Solanum pennellii HOM05D003540 ORTHO05D004012 6.4e-17 91.3 71 63.4
PGSC0003DMG400024178 Solanum tuberosum HOM05D003540 ORTHO05D004012 6.4e-17 91.3 71 63.4
TAR381G0359 Trochodendron aralioides HOM05D003540 ORTHO05D004012 6.4e-17 91.3 64 70.3
Zm00001eb107620 Zea mays HOM05D003540 ORTHO05D004012 6.4e-17 91.3 71 66.2
Hma1.2p1_0961F.1_g241695 Hydrangea macrophylla HOM05D003540 ORTHO05D004012 8.4e-17 90.9 79 59.5
Hma1.2p1_0961F.1_g241710 Hydrangea macrophylla HOM05D003540 ORTHO05D004012 8.4e-17 90.9 79 59.5
Nitab4.5_0001984g0080 Nicotiana tabacum HOM05D003540 ORTHO05D004012 8.4e-17 90.9 58 77.6
PGSC0003DMG401002119 Solanum tuberosum HOM05D003540 ORTHO05D004012 8.4e-17 90.9 71 63.4
Sc23g0000530 Simmondsia chinensis HOM05D003540 ORTHO05D004012 1.1e-16 90.5 78 57.7
Aqoxy6G00672 Aquilegia oxysepala HOM05D003540 ORTHO05D004012 1.4e-16 90.1 60 70.0
CAN.G460.5 Capsicum annuum HOM05D003540 ORTHO05D004012 1.4e-16 90.1 71 62.0
SGA_v2.0_scaffold37G14731 Striga asiatica HOM05D003540 ORTHO05D004012 1.4e-16 90.1 71 66.2
vmacro04682 Vaccinium macrocarpon HOM05D003540 ORTHO05D004012 3.2e-16 89.0 72 62.5
Lj1g0000615 Lotus japonicus HOM05D003540 ORTHO05D004012 4.2e-16 88.6 56 75.0
PSO675G6040 Papaver somniferum HOM05D003540 ORTHO05D004012 4.2e-16 88.6 73 58.9
EL10Ac3g06094 Beta vulgaris HOM05D003540 ORTHO05D004012 5.4e-16 88.2 79 57.0
Lsat_1_v5_gn_1_2480 Lactuca sativa HOM05D003540 ORTHO05D004012 5.4e-16 88.2 64 67.2
HPP92_023309 Vanilla planifolia HOM05D003540 ORTHO05D004012 5.4e-16 88.2 71 60.6
Migut.D01990 Erythranthe guttata HOM05D003540 ORTHO05D004012 7.1e-16 87.8 63 71.4
CAN.G1538.2 Capsicum annuum HOM05D003540 ORTHO05D004012 9.3e-16 87.4 71 60.6
Peaxi162Scf00725g00536 Petunia axillaris HOM05D003540 ORTHO05D004012 9.3e-16 87.4 71 62.0
arahy.Tifrunner.gnm1.ann1.41SNZJ Arachis hypogaea HOM05D003540 ORTHO05D004012 1.2e-15 87.0 72 54.2
arahy.Tifrunner.gnm1.ann1.NU78SD Arachis hypogaea HOM05D003540 ORTHO05D004012 1.2e-15 87.0 72 54.2
MSTRG.9688 Avicennia marina HOM05D003540 ORTHO05D004012 1.2e-15 87.0 54 81.5
ECA234G0792 Erigeron canadensis HOM05D003540 ORTHO05D004012 1.2e-15 87.0 73 60.3
ECA247G1419 Erigeron canadensis HOM05D003540 ORTHO05D004012 1.2e-15 87.0 73 60.3
Migut.O00140 Erythranthe guttata HOM05D003540 ORTHO05D004012 1.2e-15 87.0 65 72.3
Glyma.02G211500 Glycine max HOM05D003540 ORTHO05D004012 1.2e-15 87.0 64 65.6
HanXRQChr02g0046851 Helianthus annuus HOM05D003540 ORTHO05D004012 1.2e-15 87.0 73 60.3
HanXRQChr08g0226211 Helianthus annuus HOM05D003540 ORTHO05D004012 1.2e-15 87.0 54 77.8
VMungo0647G0300 Vigna mungo HOM05D003540 ORTHO05D004012 1.2e-15 87.0 64 65.6
A07p10970 Brassica napus HOM05D003540 ORTHO05D004012 1.6e-15 86.7 74 56.8
BraA07t28888Z Brassica rapa HOM05D003540 ORTHO05D004012 1.6e-15 86.7 74 56.8
COL.COLO4_11964 Corchorus olitorius HOM05D003540 ORTHO05D004012 1.6e-15 86.7 71 59.2
Lalb_Chr10g0102641 Lupinus albus HOM05D003540 ORTHO05D004012 1.6e-15 86.7 54 75.9
Oeu013165.1 Olea europaea HOM05D003540 ORTHO05D004012 1.6e-15 86.7 54 77.8
SGA_v2.0_scaffold5G02749 Striga asiatica HOM05D003540 ORTHO05D004012 1.6e-15 86.7 63 73.0
BcaC06g35396 Brassica carinata HOM05D003540 ORTHO05D004012 2.1e-15 86.3 74 56.8
ClCG11G014400 Citrullus lanatus HOM05D003540 ORTHO05D004012 2.1e-15 86.3 72 62.5
Ciclev10002815m.g Citrus clementina HOM05D003540 ORTHO05D004012 2.1e-15 86.3 70 62.9
Gohir.A06G032664 Gossypium hirsutum HOM05D003540 ORTHO05D004012 2.1e-15 86.3 58 70.7
Gohir.D06G033200 Gossypium hirsutum HOM05D003540 ORTHO05D004012 2.1e-15 86.3 58 70.7
Gorai.010G036600 Gossypium raimondii HOM05D003540 ORTHO05D004012 2.1e-15 86.3 58 70.7
Medtr5g065550 Medicago truncatula HOM05D003540 ORTHO05D004012 2.1e-15 86.3 73 57.5
Psat2g066800 Pisum sativum HOM05D003540 ORTHO05D004012 2.1e-15 86.3 71 57.7
TWI12G0801 Tripterygium wilfordii HOM05D003540 ORTHO05D004012 2.1e-15 86.3 71 63.4
Aqoxy1G03155 Aquilegia oxysepala HOM05D003540 ORTHO05D004012 2.7e-15 85.9 60 68.3
Manes.18G062100 Manihot esculenta HOM05D003540 ORTHO05D004012 2.7e-15 85.9 58 72.4
Thecc.08G066000 Theobroma cacao HOM05D003540 ORTHO05D004012 2.7e-15 85.9 58 70.7
BcaB03g13908 Brassica carinata HOM05D003540 ORTHO05D004012 3.5e-15 85.5 74 55.4
Duzib093G0958 Durio zibethinus HOM05D003540 ORTHO05D004012 3.5e-15 85.5 54 74.1
Phvul.008G178700 Phaseolus vulgaris HOM05D003540 ORTHO05D004012 3.5e-15 85.5 54 74.1
Hund16878 Selenicereus undatus HOM05D003540 ORTHO05D004012 3.5e-15 85.5 71 57.7
Ah.05g170560 Amaranthus hybridus HOM05D003540 ORTHO05D004012 4.6e-15 85.1 71 57.7
Duzib116G0544 Durio zibethinus HOM05D003540 ORTHO05D004012 4.6e-15 85.1 58 69.0
Glyma.14G179100 Glycine max HOM05D003540 ORTHO05D004012 4.6e-15 85.1 64 62.5
Lsat_1_v5_gn_6_105381 Lactuca sativa HOM05D003540 ORTHO05D004012 4.6e-15 85.1 71 62.0
TWI56G0839 Tripterygium wilfordii HOM05D003540 ORTHO05D004012 4.6e-15 85.1 63 68.3
AT4G14600 Arabidopsis thaliana HOM05D003540 ORTHO05D004012 1.0e-14 84.0 74 55.4
Cpa.g.sc36.201 Carica papaya HOM05D003540 ORTHO05D004012 1.0e-14 84.0 54 72.2
Duzib041G0585 Durio zibethinus HOM05D003540 ORTHO05D004012 1.0e-14 84.0 58 69.0
Eucgr.F00400 Eucalyptus grandis HOM05D003540 ORTHO05D004012 1.0e-14 84.0 65 67.7
Manes.02G147700 Manihot esculenta HOM05D003540 ORTHO05D004012 1.0e-14 84.0 71 59.2
Sed0022834 Sechium edule HOM05D003540 ORTHO05D004012 1.0e-14 84.0 54 75.9
THA.LOC104812634 Tarenaya hassleriana HOM05D003540 ORTHO05D004012 1.0e-14 84.0 77 57.1
Carub.0001s2726 Capsella rubella HOM05D003540 ORTHO05D004012 1.3e-14 83.6 65 63.1
CiPaw.07G169400 Carya illinoinensis HOM05D003540 ORTHO05D004012 1.3e-14 83.6 54 70.4
MELO3C003542.2 Cucumis melo HOM05D003540 ORTHO05D004012 1.3e-14 83.6 54 75.9
THA.LOC104820588 Tarenaya hassleriana HOM05D003540 ORTHO05D004012 1.3e-14 83.6 74 55.4
QL09p016915 Quercus lobata HOM05D003540 ORTHO05D004012 1.7e-14 83.2 71 56.3
Actinidia29606 Actinidia chinensis HOM05D003540 ORTHO05D004012 2.3e-14 82.8 94 48.9
AL7G41530 Arabidopsis lyrata HOM05D003540 ORTHO05D004012 2.3e-14 82.8 65 61.5
Lalb_Chr23g0270201 Lupinus albus HOM05D003540 ORTHO05D004012 2.3e-14 82.8 71 57.7
Lalb_Chr23g0270301 Lupinus albus HOM05D003540 ORTHO05D004012 2.3e-14 82.8 71 57.7
BraA08t34486Z Brassica rapa HOM05D003540 ORTHO05D004012 3.0e-14 82.4 74 52.7
PGR031G1594 Punica granatum HOM05D003540 ORTHO05D004012 3.0e-14 82.4 63 68.3
Sed0006262 Sechium edule HOM05D003540 ORTHO05D004012 3.0e-14 82.4 66 63.6
Sp1g25000 Schrenkiella parvula HOM05D003540 ORTHO05D004012 3.9e-14 82.0 74 52.7
BcaNung06754 Brassica carinata HOM05D003540 ORTHO05D004012 5.1e-14 81.6 74 52.7
DCAR_001735 Daucus carota HOM05D003540 ORTHO05D004012 5.1e-14 81.6 63 68.3
BolC3t19806H Brassica oleracea HOM05D003540 ORTHO05D004012 6.6e-14 81.3 74 52.7
Phvul.009G034800 Phaseolus vulgaris HOM05D003540 ORTHO05D004012 6.6e-14 81.3 73 52.1
AL1G42780 Arabidopsis lyrata HOM05D003540 ORTHO05D004012 8.7e-14 80.9 65 61.5
MD15G1380400 Malus domestica HOM05D003540 ORTHO05D004012 8.7e-14 80.9 55 69.1
Aa31LG5G21170 Aethionema arabicum HOM05D003540 ORTHO05D004012 1.1e-13 80.5 74 51.4
AT1G29060 Arabidopsis thaliana HOM05D003540 ORTHO05D004012 1.1e-13 80.5 65 61.5
Thhalv10009065m.g Eutrema salsugineum HOM05D003540 ORTHO05D004012 1.1e-13 80.5 74 51.4
Sabra05G0121300 Salix brachista HOM05D003540 ORTHO05D004012 1.1e-13 80.5 71 53.5
C03p75500 Brassica napus HOM05D003540 ORTHO05D004012 1.5e-13 80.1 74 51.4
Lj1g0025059 Lotus japonicus HOM05D003540 ORTHO05D004012 1.5e-13 80.1 71 53.5
BcaNung06434 Brassica carinata HOM05D003540 ORTHO05D004012 1.9e-13 79.7 74 51.4
Potri.005G159600 Populus trichocarpa HOM05D003540 ORTHO05D004012 1.9e-13 79.7 71 53.5
Prupe.1G526600 Prunus persica HOM05D003540 ORTHO05D004012 1.9e-13 79.7 54 68.5
CARHR028280 Cardamine hirsuta HOM05D003540 ORTHO05D004012 2.5e-13 79.3 74 52.7
Medtr3g099773 Medicago truncatula HOM05D003540 ORTHO05D004012 2.5e-13 79.3 54 66.7
CDE05G3211 Ceratophyllum demersum HOM05D000364 ORTHO05D004012 4.3e-13 78.6 57 70.2
GSVIVG01003618001 Vitis vinifera HOM05D003540 ORTHO05D004012 4.3e-13 78.6 54 66.7
Psat5g050000 Pisum sativum HOM05D003540 ORTHO05D004012 5.6e-13 78.2 74 54.1
GSVIVG01009122001 Vitis vinifera HOM05D003540 ORTHO05D004012 5.6e-13 78.2 54 66.7
TPR.G6376 Trifolium pratense HOM05D003540 ORTHO05D004012 7.3e-13 77.8 64 57.8
arahy.Tifrunner.gnm1.ann1.QI1MS0 Arachis hypogaea HOM05D003540 ORTHO05D004012 1.3e-12 77.0 85 48.2
Glyma.06G098800 Glycine max HOM05D003540 ORTHO05D004012 1.3e-12 77.0 73 49.3
Potri.002G102400 Populus trichocarpa HOM05D003540 ORTHO05D004012 1.3e-12 77.0 71 50.7
BcaB07g32485 Brassica carinata HOM05D003540 ORTHO05D004012 1.6e-12 76.6 74 48.6
SEGI_39968 Sequoiadendron giganteum HOM05D003540 ORTHO05D004012 2.1e-12 76.3 51 70.6
arahy.Tifrunner.gnm1.ann1.Q67T8J Arachis hypogaea HOM05D003540 ORTHO05D004012 3.6e-12 75.5 83 49.4
Actinidia33112 Actinidia chinensis HOM05D003540 ORTHO05D004012 8.1e-12 74.3 45 80.0
SalBow6G2258 Salvia bowleyana HOM05D003540 ORTHO05D004012 8.1e-12 74.3 59 67.8
SalBow6G4055 Salvia bowleyana HOM05D003540 ORTHO05D004012 8.1e-12 74.3 59 67.8
BcaC05g26921 Brassica carinata HOM05D003540 ORTHO05D004012 2.4e-11 72.8 74 47.3
C05p27740 Brassica napus HOM05D003540 ORTHO05D004012 2.4e-11 72.8 74 47.3
FAN13G2229 Fragaria x ananassa HOM05D003540 ORTHO05D004012 6.9e-11 71.2 69 56.5
AUR62002400 Chenopodium quinoa HOM05D003540 ORTHO05D004012 9.0e-11 70.9 48 68.8
Thecc.01G093400 Theobroma cacao HOM05D003540 ORTHO05D004012 1.5e-10 70.1 82 42.7
RcHm_v2.0_Chr7g0237701 Rosa chinensis HOM05D003540 ORTHO05D004012 2.0e-10 69.7 71 52.1
FAN18G2789 Fragaria x ananassa HOM05D003540 ORTHO05D004012 3.4e-10 68.9 69 55.1
Mapoly0006s0109 Marchantia polymorpha HOM05D003540 ORTHO05D004012 4.4e-10 68.6 68 50.0
FvH4_5g35960 Fragaria vesca HOM05D003540 ORTHO05D004012 5.8e-10 68.2 69 55.1
FAN08G1899 Fragaria x ananassa HOM05D003540 ORTHO05D004012 5.8e-10 68.2 69 55.1
Gohir.D11G218000 Gossypium hirsutum HOM05D003540 ORTHO05D004012 7.6e-10 67.8 82 41.5
Gorai.007G236000 Gossypium raimondii HOM05D003540 ORTHO05D004012 7.6e-10 67.8 82 41.5
TWI74G0452 Tripterygium wilfordii HOM05D003540 ORTHO05D004012 1.7e-09 66.6 64 48.4
Gohir.A11G205600 Gossypium hirsutum HOM05D003540 ORTHO05D004012 2.2e-09 66.2 82 40.2
COL.COLO4_27316 Corchorus olitorius HOM05D003540 ORTHO05D004012 1.1e-08 63.9 64 48.4
Haze_15046 Corylus avellana HOM05D003540 ORTHO05D004012 1.9e-08 63.2 67 47.8
SalBow8G4833 Salvia bowleyana HOM05D003540 ORTHO05D004012 5.4e-08 61.6 45 68.9
Nitab4.5_0001078g0070 Nicotiana tabacum HOM05D003540 ORTHO05D004012 9.3e-08 60.8 71 49.3
Cc04_g11820 Coffea canephora HOM05D003540 ORTHO05D004012 1.6e-07 60.1 69 43.5
SMO141G0171 Selaginella moellendorffii HOM05D003540 ORTHO05D004012 2.1e-07 59.7 67 43.3
CiPaw.01G047900 Carya illinoinensis HOM05D003540 ORTHO05D004012 2.7e-07 59.3 56 48.2
Cfa013710 Carpinus fangiana HOM05D003540 ORTHO05D004012 4.6e-07 58.5 35 80.0
Gohir.A05G356050 Gossypium hirsutum HOM05D003540 ORTHO05D004012 4.6e-07 58.5 38 71.1
Haze_22354 Corylus avellana HOM05D003540 ORTHO05D004012 6.0e-07 58.2 35 77.1
AagrBONN_evm.TU.Sc2ySwM_228.2385 Anthoceros agrestis HOM05D003540 ORTHO05D004012 2.3e-06 56.2 68 42.6
MD08G1191600 Malus domestica HOM05D003540 ORTHO05D004012 3.0e-06 55.8 68 47.1


User provided reference genes

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