Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G1237 Ceratophyllum demersum HOM05D006391 ORTHO05D007767 4.1e-145 518.1 268 100.0
TAR636G3322 Trochodendron aralioides HOM05D001448 ORTHO05D005781 5.1e-95 351.7 312 63.1
Duzib177G0389 Durio zibethinus HOM05D006391 ORTHO05D007767 6.6e-95 351.3 312 63.5
Nn1g02693 Nelumbo nucifera HOM05D006391 ORTHO05D007767 1.5e-94 350.1 315 62.2
Gohir.A11G251400 Gossypium hirsutum HOM05D006391 ORTHO05D007767 1.9e-94 349.7 314 62.1
COL.COLO4_15424 Corchorus olitorius HOM05D006391 ORTHO05D007767 7.3e-94 347.8 313 62.6
Cc02_g09040 Coffea canephora HOM05D006391 ORTHO05D007767 1.2e-93 347.1 314 62.1
MBI17_g17506_MAGBIO Magnolia biondii HOM05D006391 ORTHO05D007767 8.1e-93 344.4 313 61.7
Gohir.D11G261800 Gossypium hirsutum HOM05D006391 ORTHO05D007767 1.4e-92 343.6 314 61.5
Gorai.007G280500 Gossypium raimondii HOM05D006391 ORTHO05D007767 1.8e-92 343.2 314 61.1
ATR0680G180 Amborella trichopoda HOM05D006391 ORTHO05D007767 3.1e-92 342.4 311 61.1
Cfa006327 Carpinus fangiana HOM05D006391 ORTHO05D007767 1.2e-91 340.5 315 61.0
Lj2A39G66 Lonicera japonica HOM05D006391 ORTHO05D007767 2.6e-91 339.3 317 61.5
Thecc.05G276300 Theobroma cacao HOM05D006391 ORTHO05D007767 3.4e-91 339.0 313 60.4
CiPaw.07G078100 Carya illinoinensis HOM05D006391 ORTHO05D007767 5.8e-91 338.2 313 60.4
Potri.013G044600 Populus trichocarpa HOM05D006391 ORTHO05D007767 5.8e-91 338.2 313 60.4
PSO832G3851 Papaver somniferum HOM05D006391 ORTHO05D007767 1.3e-90 337.0 313 61.3
Eucgr.H04256 Eucalyptus grandis HOM05D006391 ORTHO05D007767 1.7e-90 336.7 313 61.3
Atru.chr2.892 Acer truncatum HOM05D006391 ORTHO05D007767 3.8e-90 335.5 315 60.6
VMungo0720G1212 Vigna mungo HOM05D006391 ORTHO05D007767 3.8e-90 335.5 308 61.0
Ca_10006_v3 Cicer arietinum L. HOM05D006391 ORTHO05D007767 4.9e-90 335.1 309 60.8
QL03p031977 Quercus lobata HOM05D006391 ORTHO05D007767 1.9e-89 333.2 312 61.5
GSVIVG01036208001 Vitis vinifera HOM05D006391 ORTHO05D007767 1.9e-89 333.2 315 60.6
Glyma.20G222100 Glycine max HOM05D006391 ORTHO05D007767 5.4e-89 331.6 310 59.4
Sc09g0004120 Simmondsia chinensis HOM05D006391 ORTHO05D007767 9.3e-89 330.9 315 59.4
Glyma.10G167000 Glycine max HOM05D006391 ORTHO05D007767 1.6e-88 330.1 310 60.3
Peaxi162Scf00120g00213 Petunia axillaris HOM05D006391 ORTHO05D007767 1.6e-88 330.1 319 58.9
Phvul.L001863 Phaseolus vulgaris HOM05D006391 ORTHO05D007767 1.6e-88 330.1 308 60.1
Sabra13G0041000 Salix brachista HOM05D006391 ORTHO05D007767 4.6e-88 328.6 313 60.4
PGSC0003DMG400028690 Solanum tuberosum HOM05D006391 ORTHO05D007767 7.8e-88 327.8 305 61.3
PGR004G0019 Punica granatum HOM05D006391 ORTHO05D007767 1.3e-87 327.0 314 57.0
Solyc11g006080.2 Solanum lycopersicum HOM05D006391 ORTHO05D007767 1.3e-87 327.0 305 61.6
CANSAT54G0018 Cannabis sativa HOM05D006391 ORTHO05D007767 1.7e-87 326.6 311 60.1
Sopen11g002020 Solanum pennellii HOM05D006391 ORTHO05D007767 1.7e-87 326.6 305 62.0
PSO210G7203 Papaver somniferum HOM05D006391 ORTHO05D007767 2.3e-87 326.2 313 59.4
Dinv14621 Davidia involucrata HOM05D006391 ORTHO05D007767 3.0e-87 325.9 312 60.3
ClCG06G009350 Citrullus lanatus HOM05D006391 ORTHO05D007767 3.9e-87 325.5 314 59.6
Medtr1g079830 Medicago truncatula HOM05D006391 ORTHO05D007767 3.9e-87 325.5 309 59.2
Prupe.6G348300 Prunus persica HOM05D006391 ORTHO05D007767 3.9e-87 325.5 315 58.7
TWI56G1126 Tripterygium wilfordii HOM05D006391 ORTHO05D007767 5.1e-87 325.1 315 58.4
Nitab4.5_0004928g0020 Nicotiana tabacum HOM05D006391 ORTHO05D007767 1.9e-86 323.2 309 59.9
Ciclev10020524m.g Citrus clementina HOM05D006391 ORTHO05D007767 2.5e-86 322.8 318 58.2
arahy.Tifrunner.gnm1.ann1.DTTE32 Arachis hypogaea HOM05D006391 ORTHO05D007767 3.3e-86 322.4 309 58.6
Lj5g0002062 Lotus japonicus HOM05D006391 ORTHO05D007767 3.3e-86 322.4 311 58.8
Manes.08G137500 Manihot esculenta HOM05D006391 ORTHO05D007767 5.6e-86 321.6 317 58.7
Lalb_Chr21g0311261 Lupinus albus HOM05D006391 ORTHO05D007767 7.3e-86 321.2 309 58.3
Nitab4.5_0000856g0160 Nicotiana tabacum HOM05D006391 ORTHO05D007767 9.6e-86 320.9 304 61.2
MD12G1245500 Malus domestica HOM05D006391 ORTHO05D007767 2.1e-85 319.7 316 58.5
Actinidia06783 Actinidia chinensis HOM05D006391 ORTHO05D007767 3.6e-85 318.9 314 58.3
SalBow3G3308 Salvia bowleyana HOM05D006391 ORTHO05D007767 8.1e-85 317.8 305 57.0
Aqoxy5G00275 Aquilegia oxysepala HOM05D006391 ORTHO05D007767 1.1e-84 317.4 316 58.9
CsaV3_1G045530 Cucumis sativus L. HOM05D006391 ORTHO05D007767 1.1e-84 317.4 314 59.6
TPR.G10279 Trifolium pratense HOM05D006391 ORTHO05D007767 1.4e-84 317.0 310 59.4
arahy.Tifrunner.gnm1.ann1.9EWV20 Arachis hypogaea HOM05D006391 ORTHO05D007767 1.2e-83 313.9 309 57.3
ECA233G2464 Erigeron canadensis HOM05D006391 ORTHO05D007767 1.2e-83 313.9 318 56.6
Aa31LG5G14980 Aethionema arabicum HOM05D006391 ORTHO05D007767 2.0e-83 313.2 318 57.5
Lsat_1_v5_gn_8_2721 Lactuca sativa HOM05D006391 ORTHO05D007767 2.6e-83 312.8 318 56.6
FAN05G3173 Fragaria x ananassa HOM05D006391 ORTHO05D007767 3.4e-83 312.4 310 57.7
Migut.F00812 Erythranthe guttata HOM05D006391 ORTHO05D007767 7.6e-83 311.2 302 58.6
FAN05G1344 Fragaria x ananassa HOM05D006391 ORTHO05D007767 9.9e-83 310.8 309 57.0
FAN09G3726 Fragaria x ananassa HOM05D006391 ORTHO05D007767 1.7e-82 310.1 310 57.4
HanXRQChr08g0225371 Helianthus annuus HOM05D006391 ORTHO05D007767 1.7e-82 310.1 307 57.3
RcHm_v2.0_Chr3g0450061 Rosa chinensis HOM05D006391 ORTHO05D007767 3.8e-82 308.9 318 56.6
Hund22148 Selenicereus undatus HOM05D006391 ORTHO05D007767 3.8e-82 308.9 308 58.4
vmacro20003 Vaccinium macrocarpon HOM05D006391 ORTHO05D007767 1.1e-81 307.4 312 56.7
DCAR_028379 Daucus carota HOM05D006391 ORTHO05D007767 1.4e-81 307.0 313 56.5
CAN.G582.18 Capsicum annuum HOM05D006391 ORTHO05D007767 1.9e-81 306.6 303 59.1
Sed0023982 Sechium edule HOM05D006391 ORTHO05D007767 1.9e-81 306.6 299 58.9
AT3G04560 Arabidopsis thaliana HOM05D006391 ORTHO05D007767 3.2e-81 305.8 314 55.7
FAN02G0817 Fragaria x ananassa HOM05D006391 ORTHO05D007767 3.2e-81 305.8 310 57.1
Carub.0003s0371 Capsella rubella HOM05D006391 ORTHO05D007767 9.3e-81 304.3 312 56.4
Thhalv10020805m.g Eutrema salsugineum HOM05D006391 ORTHO05D007767 1.2e-80 303.9 316 54.7
C05p62710 Brassica napus HOM05D006391 ORTHO05D007767 1.6e-80 303.5 313 56.5
AL3G14580 Arabidopsis lyrata HOM05D006391 ORTHO05D007767 2.1e-80 303.1 315 55.2
BcaC05g29933 Brassica carinata HOM05D006391 ORTHO05D007767 2.7e-80 302.8 313 56.5
BolC5t34924H Brassica oleracea HOM05D006391 ORTHO05D007767 2.7e-80 302.8 313 56.5
THA.LOC104827288 Tarenaya hassleriana HOM05D006391 ORTHO05D007767 3.5e-80 302.4 317 53.6
EL10Ac4g09055 Beta vulgaris HOM05D006391 ORTHO05D007767 7.9e-80 301.2 309 57.3
BcaC05g30188 Brassica carinata HOM05D006391 ORTHO05D007767 3.0e-79 299.3 316 55.7
FAN14G3605 Fragaria x ananassa HOM05D006391 ORTHO05D007767 3.0e-79 299.3 314 54.8
BraA05t23038Z Brassica rapa HOM05D006391 ORTHO05D007767 3.9e-79 298.9 315 55.2
AUR62004876 Chenopodium quinoa HOM05D006391 ORTHO05D007767 1.1e-78 297.4 315 54.6
Sp3g03400 Schrenkiella parvula HOM05D006391 ORTHO05D007767 1.1e-78 297.4 317 53.9
A05p42930 Brassica napus HOM05D006391 ORTHO05D007767 1.9e-78 296.6 316 55.4
MELO3C024661.2 Cucumis melo HOM05D006391 ORTHO05D007767 2.5e-78 296.2 310 58.1
FAN14G5548 Fragaria x ananassa HOM05D006391 ORTHO05D007767 2.5e-78 296.2 314 54.5
Zm00001eb259140 Zea mays HOM05D006391 ORTHO05D007767 3.3e-78 295.8 327 54.7
AUR62037609 Chenopodium quinoa HOM05D006391 ORTHO05D007767 4.3e-78 295.4 315 54.6
Os02g0820600 Oryza sativa ssp. japonica HOM05D006391 ORTHO05D007767 5.6e-78 295.0 322 55.0
FvH4_6g02310 Fragaria vesca HOM05D006391 ORTHO05D007767 7.4e-78 294.7 314 54.5
Sed0020342 Sechium edule HOM05D006391 ORTHO05D007767 7.4e-78 294.7 314 54.5
Rhsim05G0175400 Rhododendron simsii HOM05D006391 ORTHO05D007767 4.8e-77 292.0 375 48.8
Sed0026137 Sechium edule HOM05D006391 ORTHO05D007767 1.8e-76 290.0 314 55.7
Haze_04461 Corylus avellana HOM05D006391 ORTHO05D007767 5.3e-76 288.5 427 44.0
CARHR078730 Cardamine hirsuta HOM05D006391 ORTHO05D007767 6.9e-76 288.1 316 52.8
SEGI_17356 Sequoiadendron giganteum HOM05D006391 ORTHO05D007767 1.5e-75 287.0 324 50.9
AUR62001083 Chenopodium quinoa HOM05D006391 ORTHO05D007767 2.6e-75 286.2 339 50.7
unitig_32.g11831 Utricularia gibba HOM05D006391 ORTHO05D007767 2.6e-75 286.2 312 53.2
CSS0020771 Camellia sinensis var. sinensis HOM05D006391 ORTHO05D007767 4.9e-74 282.0 311 54.3
Pp3c19_8680 Physcomitrium patens HOM05D006391 ORTHO05D007767 1.6e-64 250.4 305 47.9
Ah.04g163310 Amaranthus hybridus HOM05D006391 ORTHO05D007767 7.9e-64 248.1 311 49.2
HPP92_007146 Vanilla planifolia HOM05D006391 ORTHO05D007767 2.5e-62 243.0 253 54.2
SGA_v2.0_scaffold243G44310 Striga asiatica HOM05D006391 ORTHO05D007767 3.3e-62 242.7 329 46.2
MD04G1228400 Malus domestica HOM05D006391 ORTHO05D007767 1.4e-60 237.3 269 52.4
Oeu034581.1 Olea europaea HOM05D006391 ORTHO05D007767 2.2e-58 229.9 198 60.1
Mapoly0044s0074 Marchantia polymorpha HOM05D006391 ORTHO05D007767 9.4e-57 224.6 324 42.9
SMO203G0061 Selaginella moellendorffii HOM05D006391 ORTHO05D007767 8.8e-55 218.0 299 44.1
Cpa.g.sc162.14 Carica papaya HOM05D006391 ORTHO05D007767 2.5e-49 199.9 228 53.5
Psat6g143040 Pisum sativum HOM05D006391 ORTHO05D007767 3.7e-45 186.0 221 51.1
CBR_g8309 Chara braunii HOM05D006391 ORTHO05D007767 5.2e-39 165.6 331 34.1
HPP92_007142 Vanilla planifolia HOM05D006391 ORTHO05D007767 6.7e-39 165.2 208 48.1
HPP92_007141 Vanilla planifolia HOM05D006391 ORTHO05D007767 1.1e-33 147.9 87 80.5
QL03p032009 Quercus lobata HOM05D006391 ORTHO05D007767 3.6e-24 116.3 72 81.9
Oeu058337.1 Olea europaea HOM05D006391 ORTHO05D007767 1.4e-23 114.4 73 76.7
SHI23187 Sapria himalayana HOM05D006391 ORTHO05D007767 4.4e-22 109.4 84 67.9
CDE06G2524 Ceratophyllum demersum HOM05D006391 ORTHO05D007767 2.8e-21 106.7 68 85.3
MCO07G609 Micromonas commoda HOM05D006391 ORTHO05D007767 1.0e-15 88.2 286 27.3
BcaB04g19320 Brassica carinata HOM05D006391 ORTHO05D007767 8.6e-10 68.6 46 73.9
Cre02.g105450 Chlamydomonas reinhardtii HOM05D006391 ORTHO05D007767 1.5e-09 67.8 203 26.6
SHI23188 Sapria himalayana HOM05D006391 ORTHO05D007767 5.2e-07 59.3 107 39.3


User provided reference genes

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