Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G1215 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 4.0e-254 880.9 444 100.0
TAR636G2805 Trochodendron aralioides HOM05D005239 ORTHO05D006698 4.5e-157 558.5 459 63.8
TAR629G3002 Trochodendron aralioides HOM05D005239 ORTHO05D006698 3.2e-155 552.4 467 62.5
CSS0007844 Camellia sinensis var. sinensis HOM05D005239 ORTHO05D006698 3.0e-153 545.8 460 62.8
Nn6g33642 Nelumbo nucifera HOM05D005239 ORTHO05D006698 4.0e-153 545.4 460 63.5
CsaV3_3G010220 Cucumis sativus L. HOM05D005239 ORTHO05D006698 6.3e-151 538.1 453 63.1
Thecc.04G216000 Theobroma cacao HOM05D005239 ORTHO05D006698 3.5e-149 532.3 442 63.8
MELO3C006242.2 Cucumis melo HOM05D005239 ORTHO05D006698 4.5e-149 531.9 459 62.1
COL.COLO4_20862 Corchorus olitorius HOM05D005239 ORTHO05D006698 7.7e-149 531.2 443 61.9
Duzib151G1142 Durio zibethinus HOM05D005239 ORTHO05D006698 7.7e-149 531.2 447 63.5
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 1.0e-148 530.8 449 64.6
Peaxi162Scf01144g00013 Petunia axillaris HOM05D005239 ORTHO05D006698 1.3e-148 530.4 450 61.8
Dinv43567 Davidia involucrata HOM05D005239 ORTHO05D006698 1.7e-148 530.0 401 66.8
QL04p024849 Quercus lobata HOM05D005239 ORTHO05D006698 1.7e-148 530.0 368 71.5
RcHm_v2.0_Chr6g0273481 Rosa chinensis HOM05D005239 ORTHO05D006698 1.7e-148 530.0 443 61.9
CiPaw.13G020400 Carya illinoinensis HOM05D005239 ORTHO05D006698 2.3e-148 529.6 459 61.4
TWI59G0212 Tripterygium wilfordii HOM05D005239 ORTHO05D006698 2.3e-148 529.6 463 60.5
vmacro21097 Vaccinium macrocarpon HOM05D005239 ORTHO05D006698 2.3e-148 529.6 447 62.9
Gohir.A09G201600 Gossypium hirsutum HOM05D005239 ORTHO05D006698 5.0e-148 528.5 450 62.7
Hma1.2p1_0601F.1_g187220 Hydrangea macrophylla HOM05D005239 ORTHO05D006698 5.0e-148 528.5 457 61.3
Gorai.006G218900 Gossypium raimondii HOM05D005239 ORTHO05D006698 1.1e-147 527.3 450 62.7
ClCG05G002730 Citrullus lanatus HOM05D005239 ORTHO05D006698 1.2e-146 523.9 459 63.0
Gohir.D09G195500 Gossypium hirsutum HOM05D005239 ORTHO05D006698 1.6e-146 523.5 450 62.4
Solyc01g080860.3 Solanum lycopersicum HOM05D005239 ORTHO05D006698 1.6e-146 523.5 449 62.1
Sopen01g032450 Solanum pennellii HOM05D005239 ORTHO05D006698 1.6e-146 523.5 449 62.4
Nitab4.5_0004264g0020 Nicotiana tabacum HOM05D005239 ORTHO05D006698 2.1e-146 523.1 451 61.9
Aqoxy3G02472 Aquilegia oxysepala HOM05D005239 ORTHO05D006698 2.8e-146 522.7 468 61.8
Prupe.1G571600 Prunus persica HOM05D005239 ORTHO05D006698 3.6e-146 522.3 451 60.3
CANSAT54G1536 Cannabis sativa HOM05D005239 ORTHO05D006698 8.0e-146 521.2 447 61.5
GSVIVG01018386001 Vitis vinifera HOM05D005239 ORTHO05D006698 1.4e-145 520.4 445 61.1
Ah.06g191320 Amaranthus hybridus HOM05D005239 ORTHO05D006698 8.9e-145 517.7 447 61.3
ECA234G1231 Erigeron canadensis HOM05D005239 ORTHO05D006698 8.9e-145 517.7 443 59.1
Sed0027364 Sechium edule HOM05D005239 ORTHO05D006698 8.9e-145 517.7 450 60.4
PGR119G0794 Punica granatum HOM05D005239 ORTHO05D006698 1.5e-144 516.9 464 60.1
Actinidia21601 Actinidia chinensis HOM05D005239 ORTHO05D006698 3.4e-144 515.8 450 60.9
Dinv44000 Davidia involucrata HOM05D005239 ORTHO05D001060 5.7e-144 515.0 359 71.3
Sed0010493 Sechium edule HOM05D005239 ORTHO05D006698 7.5e-144 514.6 397 66.8
AUR62035533 Chenopodium quinoa HOM05D005239 ORTHO05D006698 9.8e-144 514.2 450 60.2
FvH4_2g12720 Fragaria vesca HOM05D005239 ORTHO05D006698 9.8e-144 514.2 443 61.6
Cc02_g25930 Coffea canephora HOM05D005239 ORTHO05D006698 1.3e-143 513.8 449 59.7
Atru.chr9.1540 Acer truncatum HOM05D005239 ORTHO05D006698 2.2e-143 513.1 430 62.1
Ciclev10020370m.g Citrus clementina HOM05D005239 ORTHO05D006698 2.2e-143 513.1 354 71.2
Rhsim01G0145300 Rhododendron simsii HOM05D005239 ORTHO05D006698 2.8e-143 512.7 482 58.3
Manes.05G061000 Manihot esculenta HOM05D005239 ORTHO05D006698 3.7e-143 512.3 445 60.7
PGSC0003DMG400001672 Solanum tuberosum HOM05D005239 ORTHO05D006698 4.9e-143 511.9 474 58.2
MD08G1235300 Malus domestica HOM05D005239 ORTHO05D006698 1.1e-142 510.8 450 59.3
AUR62041654 Chenopodium quinoa HOM05D005239 ORTHO05D006698 1.4e-142 510.4 446 60.8
THA.LOC104802511 Tarenaya hassleriana HOM05D005239 ORTHO05D006698 1.4e-142 510.4 445 61.8
FAN15G3107 Fragaria x ananassa HOM05D005239 ORTHO05D006698 3.1e-142 509.2 456 59.9
Eucgr.H02846 Eucalyptus grandis HOM05D005239 ORTHO05D006698 4.1e-142 508.8 361 68.7
FAN27G2303 Fragaria x ananassa HOM05D005239 ORTHO05D006698 5.4e-142 508.4 456 59.9
Sc20g0003020 Simmondsia chinensis HOM05D005239 ORTHO05D006698 9.2e-142 507.7 390 66.4
HPP92_001886 Vanilla planifolia HOM05D005239 ORTHO05D006698 1.2e-141 507.3 371 68.7
PSO302G0170 Papaver somniferum HOM05D005239 ORTHO05D006698 1.6e-141 506.9 470 57.2
DCAR_029633 Daucus carota HOM05D005239 ORTHO05D006698 2.7e-141 506.1 357 69.7
PSO170G2576 Papaver somniferum HOM05D005239 ORTHO05D006698 3.5e-141 505.8 472 58.3
THA.LOC104817164 Tarenaya hassleriana HOM05D005239 ORTHO05D006698 5.9e-141 505.0 443 59.6
TWI14G1099 Tripterygium wilfordii HOM05D005239 ORTHO05D006698 5.9e-141 505.0 458 59.6
Potri.002G216100 Populus trichocarpa HOM05D005239 ORTHO05D006698 7.8e-141 504.6 457 60.8
CAN.G1480.7 Capsicum annuum HOM05D005239 ORTHO05D006698 1.7e-140 503.4 352 70.5
Aa31LG1G26110 Aethionema arabicum HOM05D005239 ORTHO05D006698 2.9e-140 502.7 375 66.9
Sabra02G0168400 Salix brachista HOM05D005239 ORTHO05D006698 3.9e-140 502.3 457 60.0
ATR1153G024 Amborella trichopoda HOM05D005239 ORTHO05D006698 1.5e-139 500.4 368 69.6
HanXRQChr17g0562471 Helianthus annuus HOM05D005239 ORTHO05D006698 3.3e-139 499.2 448 58.5
Phvul.007G006700 Phaseolus vulgaris HOM05D005239 ORTHO05D006698 4.3e-139 498.8 374 67.4
VMungo0720G0476 Vigna mungo HOM05D005239 ORTHO05D006698 5.6e-139 498.4 374 67.4
Glyma.20G243400 Glycine max HOM05D005239 ORTHO05D006698 1.2e-138 497.3 388 64.7
arahy.Tifrunner.gnm1.ann1.X9CQTL Arachis hypogaea HOM05D005239 ORTHO05D006698 1.6e-138 496.9 370 67.0
Haze_02934 Corylus avellana HOM05D005239 ORTHO05D006698 1.6e-138 496.9 469 58.4
Thhalv10001456m.g Eutrema salsugineum HOM05D005239 ORTHO05D006698 2.1e-138 496.5 445 58.4
SGA_v2.0_scaffold69G23296 Striga asiatica HOM05D005239 ORTHO05D006698 4.7e-138 495.4 450 59.8
Lj5g0010357 Lotus japonicus HOM05D005239 ORTHO05D006698 6.1e-138 495.0 372 68.0
EL10Ac4g08842 Beta vulgaris HOM05D005239 ORTHO05D006698 1.4e-137 493.8 445 59.3
Ca_11344_v3 Cicer arietinum L. HOM05D005239 ORTHO05D006698 4.0e-137 492.3 353 69.1
arahy.Tifrunner.gnm1.ann1.XN1C7B Arachis hypogaea HOM05D005239 ORTHO05D006698 6.8e-137 491.5 352 69.9
Lalb_Chr02g0143811 Lupinus albus HOM05D005239 ORTHO05D006698 6.8e-137 491.5 345 70.4
Medtr1g116110 Medicago truncatula HOM05D005239 ORTHO05D006698 8.9e-137 491.1 363 67.2
TPR.G10426 Trifolium pratense HOM05D005239 ORTHO05D006698 8.9e-137 491.1 363 68.0
Os01g0527700 Oryza sativa ssp. japonica HOM05D005239 ORTHO05D006698 7.5e-136 488.0 364 64.8
Psat6g232360 Pisum sativum HOM05D005239 ORTHO05D006698 1.4e-134 483.8 367 67.0
Carub.0004s2708 Capsella rubella HOM05D005239 ORTHO05D006698 3.2e-134 482.6 443 57.8
SGA_v2.0_scaffold52G19274 Striga asiatica HOM05D005239 ORTHO05D006698 3.2e-134 482.6 362 67.4
AT2G44520 Arabidopsis thaliana HOM05D005239 ORTHO05D006698 7.0e-134 481.5 362 65.2
AL4G43540 Arabidopsis lyrata HOM05D005239 ORTHO05D006698 9.2e-134 481.1 362 65.5
BcaB06g29384 Brassica carinata HOM05D005239 ORTHO05D006698 1.2e-133 480.7 350 66.6
Sp4g26610 Schrenkiella parvula HOM05D005239 ORTHO05D006698 4.6e-133 478.8 374 63.6
Zm00001eb402310 Zea mays HOM05D005239 ORTHO05D006698 6.0e-133 478.4 362 64.4
BcaC02g07098 Brassica carinata HOM05D005239 ORTHO05D006698 1.7e-132 476.9 385 61.8
BolC4t28610H Brassica oleracea HOM05D005239 ORTHO05D006698 1.7e-132 476.9 385 61.8
Oeu002884.1 Olea europaea HOM05D005239 ORTHO05D006698 6.6e-132 474.9 524 51.9
BraA04t18797Z Brassica rapa HOM05D005239 ORTHO05D006698 8.6e-132 474.6 443 56.2
Lj9A547G68 Lonicera japonica HOM05D005239 ORTHO05D006698 2.8e-130 469.5 342 66.7
unitig_26.g9718 Utricularia gibba HOM05D005239 ORTHO05D006698 8.0e-130 468.0 384 62.2
CDE12G0888 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 5.2e-129 465.3 250 92.8
C04p05410 Brassica napus HOM05D005239 ORTHO05D006698 7.0e-126 454.9 349 65.0
BolC4t22181H Brassica oleracea HOM05D005239 ORTHO05D006698 7.0e-126 454.9 349 65.0
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 4.3e-123 445.7 337 65.6
BcaNung07053 Brassica carinata HOM05D005239 ORTHO05D006698 2.8e-122 443.0 355 63.9
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 6.2e-122 441.8 334 65.6
Zm00001eb005400 Zea mays HOM05D005239 ORTHO05D006698 1.4e-121 440.7 336 64.9
Lsat_1_v5_gn_4_39040 Lactuca sativa HOM05D005239 ORTHO05D006698 1.2e-120 437.6 354 63.0
Nitab4.5_0001476g0120 Nicotiana tabacum HOM05D005239 ORTHO05D006698 8.3e-119 431.4 452 54.2
BcaC02g12301 Brassica carinata HOM05D005239 ORTHO05D006698 1.4e-118 430.6 341 63.3
Duzib212G0896 Durio zibethinus HOM05D005239 ORTHO05D006698 1.0e-116 424.5 449 54.3
SEGI_24425 Sequoiadendron giganteum HOM05D005239 ORTHO05D006698 1.1e-113 414.5 308 67.2
AagrBONN_evm.TU.Sc2ySwM_369.187 Anthoceros agrestis HOM05D005239 ORTHO05D006698 1.8e-113 413.7 348 58.3
MD15G1426600 Malus domestica HOM05D005239 ORTHO05D006698 4.2e-110 402.5 303 66.7
Actinidia33289 Actinidia chinensis HOM05D005239 ORTHO05D006698 2.1e-106 390.2 326 62.3
Cpa.g.sc20.28 Carica papaya HOM05D005239 ORTHO05D006698 8.1e-106 388.3 342 59.1
Migut.B01467 Erythranthe guttata HOM05D005239 ORTHO05D006698 4.2e-102 375.9 330 62.7
Mapoly0029s0153 Marchantia polymorpha HOM05D005239 ORTHO05D006698 5.1e-100 369.0 386 51.3
SMO364G0841 Selaginella moellendorffii HOM05D005239 ORTHO05D006698 4.3e-99 365.9 349 52.7
Hma1.2p1_0601F.1_g187230 Hydrangea macrophylla HOM05D005239 ORTHO05D006698 2.7e-93 346.7 295 61.7
CARHR139710 Cardamine hirsuta HOM05D005239 ORTHO05D006698 1.6e-90 337.4 246 65.9
CBR_g3821 Chara braunii HOM05D005239 ORTHO05D006698 4.5e-88 329.3 421 43.9
PSO357G0304 Papaver somniferum HOM05D005239 ORTHO05D006698 3.2e-86 323.2 201 76.6
Pp3c14_19200 Physcomitrium patens HOM05D005239 ORTHO05D006698 3.0e-84 316.6 290 55.2
CAN.G74.42 Capsicum annuum HOM05D005239 ORTHO05D006698 5.1e-84 315.8 304 55.9
Cre12.g516350 Chlamydomonas reinhardtii HOM05D005239 ORTHO05D006698 1.5e-72 277.7 300 47.7
PRCOL_00000009 Prasinoderma coloniale HOM05D005239 ORTHO05D006698 1.6e-69 267.7 344 42.7
Oeu037395.1 Olea europaea HOM05D005239 ORTHO05D006698 1.4e-68 264.6 344 47.1
MCO03G363 Micromonas commoda HOM05D005239 ORTHO05D006698 3.3e-67 260.0 283 47.7
Aqoxy5G02001 Aquilegia oxysepala HOM05D005239 ORTHO05D006698 1.7e-66 257.7 193 66.3
BraA05t19443Z Brassica rapa HOM05D005239 ORTHO05D006698 3.7e-66 256.5 288 49.3
A05p04670 Brassica napus HOM05D005239 ORTHO05D006698 9.1e-65 251.9 287 50.2
MD15G1426900 Malus domestica HOM05D005239 ORTHO05D006698 3.9e-60 236.5 187 63.1
BcaB02g08828 Brassica carinata HOM05D005239 ORTHO05D006698 4.5e-56 223.0 241 51.9
SHI13675 Sapria himalayana HOM05D005239 ORTHO05D006698 3.3e-51 206.8 204 55.4
FAN24G3432 Fragaria x ananassa HOM05D005239 ORTHO05D006698 1.3e-42 178.3 198 53.5
CDE12G0056 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 6.1e-37 159.5 88 90.9
Cfa027222 Carpinus fangiana HOM05D005239 ORTHO05D006698 1.3e-34 151.8 296 35.1
PGR004G1759 Punica granatum HOM05D005239 ORTHO05D006698 8.6e-31 139.0 121 63.6
PSO081G0040 Papaver somniferum HOM05D005239 ORTHO05D006698 1.9e-30 137.9 83 78.3
TPR.G37315 Trifolium pratense HOM05D005239 ORTHO05D006698 1.8e-28 131.3 83 71.1
Glyma.10G293300 Glycine max HOM05D005239 ORTHO05D006698 1.1e-25 122.1 76 71.1
RcHm_v2.0_Chr6g0271171 Rosa chinensis HOM05D005239 ORTHO05D006698 4.3e-22 110.2 71 73.2
RcHm_v2.0_Chr7g0200821 Rosa chinensis HOM05D005239 ORTHO05D006698 6.8e-20 102.8 71 69.0
Cc02_g25970 Coffea canephora HOM05D005239 ORTHO05D006698 9.5e-14 82.4 99 45.5
SEGI_27712 Sequoiadendron giganteum HOM05D005239 ORTHO05D006698 3.1e-12 77.4 57 64.9
SHI13676 Sapria himalayana HOM05D005239 ORTHO05D006698 2.4e-09 67.8 54 64.8


User provided reference genes

Program Settings