Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G1181 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 0.0e+00 3128.6 1712 100.0
CDE08G0981 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 0.0e+00 2571.2 1591 85.2
MBI02_g02993_MAGBIO Magnolia biondii HOM05D004560 ORTHO05D005540 2.9e-252 876.7 1928 40.7
Nn1g04868 Nelumbo nucifera HOM05D004560 ORTHO05D005540 1.8e-225 787.7 1975 38.8
TAR376G0591 Trochodendron aralioides HOM05D004560 ORTHO05D005540 1.1e-222 778.5 1960 38.1
Aqoxy5G01239 Aquilegia oxysepala HOM05D004560 ORTHO05D005540 2.7e-210 737.3 1939 37.3
Ciclev10024681m.g Citrus clementina HOM05D004560 ORTHO05D005540 5.5e-203 713.0 1951 36.7
TAR381G0340 Trochodendron aralioides HOM05D004560 ORTHO05D005540 1.0e-201 708.8 1857 37.0
QL06p041719 Quercus lobata HOM05D004560 ORTHO05D005540 6.3e-199 699.5 1973 37.5
Cfa004012 Carpinus fangiana HOM05D004560 ORTHO05D005540 5.6e-195 686.4 1943 37.6
CSS0026663 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 7.2e-195 686.0 1946 36.7
Thecc.01G055000 Theobroma cacao HOM05D004560 ORTHO05D005540 3.0e-193 680.6 1940 36.5
Glyma.17G175000 Glycine max HOM05D004560 ORTHO05D005540 2.0e-192 677.9 1930 37.0
Nitab4.5_0002016g0010 Nicotiana tabacum HOM05D004560 ORTHO05D005540 2.2e-191 674.5 1920 36.8
MD02G1171200 Malus domestica HOM05D004560 ORTHO05D005540 1.4e-190 671.8 2002 36.3
arahy.Tifrunner.gnm1.ann1.TDMJ0N Arachis hypogaea HOM05D004560 ORTHO05D005540 3.2e-190 670.6 1932 37.3
Dinv39857 Davidia involucrata HOM05D004560 ORTHO05D005540 3.2e-190 670.6 1972 36.5
TWI73G0239 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 9.2e-190 669.1 1929 37.4
arahy.Tifrunner.gnm1.ann1.IC24VR Arachis hypogaea HOM05D004560 ORTHO05D005540 1.6e-189 668.3 1932 37.1
Nitab4.5_0001034g0140 Nicotiana tabacum HOM05D004560 ORTHO05D005540 1.6e-189 668.3 1925 36.2
Manes.12G101200 Manihot esculenta HOM05D004560 ORTHO05D005540 2.0e-189 667.9 1935 36.2
Prupe.7G134200 Prunus persica HOM05D004560 ORTHO05D005540 3.5e-189 667.2 1980 36.3
TWI09G1111 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 1.0e-188 665.6 1952 36.2
Duzib147G0064 Durio zibethinus HOM05D004560 ORTHO05D005540 3.0e-188 664.1 1949 37.4
Phvul.003G244225 Phaseolus vulgaris HOM05D004560 ORTHO05D005540 5.0e-188 663.3 1926 36.2
VMungo0251G0843 Vigna mungo HOM05D004560 ORTHO05D005540 3.3e-187 660.6 1939 36.4
Manes.12G101400 Manihot esculenta HOM05D004560 ORTHO05D005540 5.6e-187 659.8 1924 36.0
MD15G1283100 Malus domestica HOM05D004560 ORTHO05D005540 7.3e-187 659.4 1990 36.3
Potri.005G137700 Populus trichocarpa HOM05D004560 ORTHO05D005540 3.1e-185 654.1 1911 36.7
Duzib187G0053 Durio zibethinus HOM05D004560 ORTHO05D005540 2.6e-184 651.0 1940 36.6
Lj4g0000036 Lotus japonicus HOM05D004560 ORTHO05D005540 7.5e-184 649.4 1937 36.2
CANSAT01G1534 Cannabis sativa HOM05D004560 ORTHO05D005540 2.9e-183 647.5 1914 35.8
Sabra05G0109900 Salix brachista HOM05D004560 ORTHO05D005540 3.7e-183 647.1 1914 35.9
Actinidia03789 Actinidia chinensis HOM05D004560 ORTHO05D005540 4.9e-183 646.7 1948 36.0
CiPaw.02G008700 Carya illinoinensis HOM05D004560 ORTHO05D005540 8.3e-183 646.0 1959 35.8
Nn5g30326 Nelumbo nucifera HOM05D004560 ORTHO05D005540 1.4e-182 645.2 1719 39.2
Potri.007G043300 Populus trichocarpa HOM05D004560 ORTHO05D005540 7.0e-182 642.9 1930 36.1
ClCG01G016790 Citrullus lanatus HOM05D004560 ORTHO05D005540 3.5e-181 640.6 1934 36.1
RcHm_v2.0_Chr2g0105371 Rosa chinensis HOM05D004560 ORTHO05D005540 4.6e-181 640.2 2009 35.5
Gorai.008G075400 Gossypium raimondii HOM05D004560 ORTHO05D005540 1.2e-178 632.1 1951 35.9
Cc07_g19160 Coffea canephora HOM05D004560 ORTHO05D005540 6.2e-178 629.8 1743 34.8
Ca_19501_v3 Cicer arietinum L. HOM05D004560 ORTHO05D005540 8.1e-178 629.4 1914 35.4
Gohir.A12G072000 Gossypium hirsutum HOM05D004560 ORTHO05D005540 4.4e-176 623.6 1949 35.8
FvH4_5g28170 Fragaria vesca HOM05D004560 ORTHO05D005540 3.7e-175 620.5 1994 35.6
TPR.G10251 Trifolium pratense HOM05D004560 ORTHO05D005540 3.7e-175 620.5 1936 35.8
Duzib264G0542 Durio zibethinus HOM05D004560 ORTHO05D005540 2.4e-174 617.8 1941 35.7
vmacro17949 Vaccinium macrocarpon HOM05D004560 ORTHO05D005540 2.4e-174 617.8 1870 36.8
CAN.G836.79 Capsicum annuum HOM05D004560 ORTHO05D005540 3.2e-174 617.5 1920 35.4
Gohir.D12G068900 Gossypium hirsutum HOM05D004560 ORTHO05D005540 4.1e-174 617.1 1946 35.8
TWI53G0832 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 4.1e-174 617.1 1934 35.7
GSVIVG01022139001 Vitis vinifera HOM05D004560 ORTHO05D005540 4.1e-174 617.1 1842 36.6
Lj7A70T81 Lonicera japonica HOM05D004560 ORTHO05D005540 5.4e-174 616.7 1924 35.4
Solyc02g090760.4 Solanum lycopersicum HOM05D004560 ORTHO05D005540 1.3e-172 612.1 1927 36.7
Sopen02g035390 Solanum pennellii HOM05D004560 ORTHO05D005540 3.0e-172 610.9 1928 36.6
Psat4g089080 Pisum sativum HOM05D004560 ORTHO05D005540 6.6e-172 609.8 1948 33.6
FAN08G1993 Fragaria x ananassa HOM05D004560 ORTHO05D005540 1.5e-171 608.6 2019 35.6
CsaV3_6G043220 Cucumis sativus L. HOM05D004560 ORTHO05D005540 1.9e-171 608.2 1913 35.8
PSO384G0851 Papaver somniferum HOM05D004560 ORTHO05D005540 4.3e-171 607.1 2026 33.1
FAN04G2449 Fragaria x ananassa HOM05D004560 ORTHO05D005540 2.1e-170 604.7 1996 35.3
ECA238G3505 Erigeron canadensis HOM05D004560 ORTHO05D005540 1.1e-169 602.4 1861 36.5
Gorai.008G075200 Gossypium raimondii HOM05D004560 ORTHO05D005540 1.1e-169 602.4 1947 35.9
Sed0014897 Sechium edule HOM05D004560 ORTHO05D005540 1.8e-169 601.7 1929 36.2
AUR62003874 Chenopodium quinoa HOM05D004560 ORTHO05D005540 2.3e-169 601.3 1856 34.8
Glyma.05G096000 Glycine max HOM05D004560 ORTHO05D005540 3.1e-169 600.9 1925 35.5
CSS0033893 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 6.8e-169 599.7 1706 37.9
FAN18G2522 Fragaria x ananassa HOM05D004560 ORTHO05D005540 2.6e-168 597.8 2009 35.1
Eucgr.I00932 Eucalyptus grandis HOM05D004560 ORTHO05D005540 3.7e-167 594.0 1930 35.2
AUR62001937 Chenopodium quinoa HOM05D004560 ORTHO05D005540 1.1e-166 592.4 1884 34.3
Gohir.D12G068700 Gossypium hirsutum HOM05D004560 ORTHO05D005540 5.4e-166 590.1 1946 35.6
Gohir.A12G070800 Gossypium hirsutum HOM05D004560 ORTHO05D005540 9.2e-166 589.3 1953 35.0
Oeu039071.1 Olea europaea HOM05D004560 ORTHO05D005540 2.7e-165 587.8 1955 34.2
EL10Ac4g07947 Beta vulgaris HOM05D004560 ORTHO05D005540 6.0e-165 586.6 1879 34.6
HanXRQChr14g0448241 Helianthus annuus HOM05D004560 ORTHO05D005540 1.3e-164 585.5 1817 35.1
TAR628G0564 Trochodendron aralioides HOM05D004560 ORTHO05D005540 3.9e-164 583.9 1257 38.1
Sabra07G0038200 Salix brachista HOM05D004560 ORTHO05D005540 2.5e-163 581.3 1744 33.0
Hund13557 Selenicereus undatus HOM05D004560 ORTHO05D005540 7.3e-163 579.7 1928 34.3
PSO135G0768 Papaver somniferum HOM05D004560 ORTHO05D005540 2.1e-162 578.2 2025 32.8
Sc03g0001520 Simmondsia chinensis HOM05D004560 ORTHO05D005540 6.2e-162 576.6 1951 35.1
Lalb_Chr16g0378501 Lupinus albus HOM05D004560 ORTHO05D005540 8.1e-162 576.2 1883 35.7
Sed0025145 Sechium edule HOM05D004560 ORTHO05D005540 8.1e-162 576.2 1915 35.5
Rhsim08G0100900 Rhododendron simsii HOM05D004560 ORTHO05D005540 3.1e-161 574.3 1892 35.8
Peaxi162Scf00450g00514 Petunia axillaris HOM05D004560 ORTHO05D005540 4.0e-161 573.9 2051 33.5
Lalb_Chr09g0323121 Lupinus albus HOM05D004560 ORTHO05D005540 8.9e-161 572.8 1934 34.5
Lalb_Chr09g0323141 Lupinus albus HOM05D004560 ORTHO05D005540 9.3e-158 562.8 1878 36.0
ATR0753G002 Amborella trichopoda HOM05D004560 ORTHO05D005540 5.1e-156 557.0 1965 34.1
HanXRQChr14g0442851 Helianthus annuus HOM05D004560 ORTHO05D005540 8.7e-156 556.2 1809 34.3
DCAR_014074 Daucus carota HOM05D004560 ORTHO05D005540 7.3e-155 553.1 1920 34.1
PSO017G5866 Papaver somniferum HOM05D004560 ORTHO05D005540 6.4e-151 540.0 1902 33.6
Lsat_1_v5_gn_2_84180 Lactuca sativa HOM05D004560 ORTHO05D005540 4.2e-150 537.3 1821 34.9
THA.LOC104819234 Tarenaya hassleriana HOM05D004560 ORTHO05D005540 9.3e-150 536.2 1901 33.7
COL.COLO4_11405 Corchorus olitorius HOM05D004560 ORTHO05D005540 1.0e-148 532.7 1458 35.3
MSTRG.23750 Avicennia marina HOM05D004560 ORTHO05D005540 4.3e-147 527.3 1916 34.0
PGR031G0319 Punica granatum HOM05D004560 ORTHO05D005540 3.8e-143 514.2 1894 34.4
PSO170G6095 Papaver somniferum HOM05D004560 ORTHO05D005540 4.9e-143 513.8 1911 33.0
Aa31LG4G18600 Aethionema arabicum HOM05D004560 ORTHO05D005540 4.5e-136 490.7 1854 34.1
Migut.N01430 Erythranthe guttata HOM05D004560 ORTHO05D005540 1.3e-127 462.6 1178 35.6
AT3G50370 Arabidopsis thaliana HOM05D004560 ORTHO05D005540 2.1e-125 455.3 1659 34.0
AL5G30500 Arabidopsis lyrata HOM05D004560 ORTHO05D005540 1.0e-124 453.0 1655 33.4
Sp5g11810 Schrenkiella parvula HOM05D004560 ORTHO05D005540 3.9e-124 451.1 1883 33.4
Cpa.g.sc55.157 Carica papaya HOM05D004560 ORTHO05D005540 1.1e-121 443.0 958 38.5
Thhalv10010051m.g Eutrema salsugineum HOM05D004560 ORTHO05D005540 1.5e-120 439.1 1864 31.8
Zm00001eb019260 Zea mays HOM05D004560 ORTHO05D005540 1.0e-119 436.4 1886 32.0
Carub.0005s1668 Capsella rubella HOM05D004560 ORTHO05D005540 2.1e-117 428.7 1720 33.8
CARHR159850 Cardamine hirsuta HOM05D004560 ORTHO05D005540 7.4e-107 393.7 1840 31.5
Actinidia16495 Actinidia chinensis HOM05D004560 ORTHO05D005540 1.0e-100 373.2 648 42.4
SEGI_38337 Sequoiadendron giganteum HOM05D004560 ORTHO05D005540 1.6e-96 359.4 2056 30.0
Haze_15408 Corylus avellana HOM05D004560 ORTHO05D005540 4.0e-92 344.7 1306 35.5
BcaB01g00621 Brassica carinata HOM05D004560 ORTHO05D005540 1.8e-89 335.9 1625 31.4
BcaC07g39495 Brassica carinata HOM05D004560 ORTHO05D005540 2.0e-80 305.8 1779 30.6
C08p25410 Brassica napus HOM05D004560 ORTHO05D005540 2.0e-80 305.8 1779 30.6
A09p43370 Brassica napus HOM05D004560 ORTHO05D005540 5.6e-78 297.7 1609 31.4
BraA09t39806Z Brassica rapa HOM05D004560 ORTHO05D005540 8.9e-76 290.4 1621 31.3
BolC8t50162H Brassica oleracea HOM05D004560 ORTHO05D005540 1.3e-74 286.6 1824 30.2
HPP92_004113 Vanilla planifolia HOM05D004560 ORTHO05D005540 4.9e-74 284.6 1961 28.4
PGSC0003DMG400004537 Solanum tuberosum HOM05D004560 ORTHO05D005540 1.1e-73 283.5 462 43.1
Os03g0395600 Oryza sativa ssp. japonica HOM05D004560 ORTHO05D005540 3.2e-73 282.0 703 34.4
unitig_736.g22380 Utricularia gibba HOM05D004560 ORTHO05D005540 3.5e-72 278.5 898 31.8
Haze_15410 Corylus avellana HOM05D004560 ORTHO05D005540 3.9e-71 275.0 567 39.5
Oeu003960.1 Olea europaea HOM05D004560 ORTHO05D005540 1.6e-64 253.1 1180 30.7
FAN04G2556 Fragaria x ananassa HOM05D004560 ORTHO05D005540 1.5e-59 236.5 438 39.5
MELO3C007558.2 Cucumis melo HOM05D004560 ORTHO05D005540 2.0e-59 236.1 1121 33.7
HPP92_004075 Vanilla planifolia HOM05D004560 ORTHO05D005540 3.2e-57 228.8 1211 26.9
Psat2g096520 Pisum sativum HOM05D004560 ORTHO05D005540 4.7e-53 214.9 289 45.7
Mapoly0121s0051 Marchantia polymorpha HOM05D004560 ORTHO05D005540 2.5e-46 192.6 1199 27.5
Atru.chr10.1634 Acer truncatum HOM05D004560 ORTHO05D005540 4.7e-45 188.3 567 42.5
Pp3c7_3230 Physcomitrium patens HOM05D004560 ORTHO05D005540 5.8e-43 181.4 1347 27.5
SHI34241 Sapria himalayana HOM05D000030 ORTHO05D000009 2.7e-40 172.6 222 45.0
Pp3c11_18520 Physcomitrium patens HOM05D004560 ORTHO05D005540 5.4e-33 148.3 1341 25.2
SMO340G0113 Selaginella moellendorffii HOM05D004560 ORTHO05D005540 1.1e-28 134.0 1455 24.3
Cpa.g.sc55.158 Carica papaya HOM05D004560 ORTHO05D005540 2.0e-27 129.8 531 40.5
unitig_899.g14938 Utricularia gibba HOM05D004560 ORTHO05D005540 7.1e-25 121.3 320 33.8
SHI34246 Sapria himalayana HOM05D004560 ORTHO05D005540 7.9e-24 117.9 1138 28.8
TAR628G1123 Trochodendron aralioides HOM05D004560 ORTHO05D005540 3.4e-19 102.4 403 37.0
Pp3c11_18522 Physcomitrium patens HOM05D004560 ORTHO05D005540 1.2e-16 94.0 1823 23.0
Psat3g009840 Pisum sativum HOM05D004560 ORTHO05D005540 2.1e-16 93.2 216 36.6
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 3.5e-16 92.4 154 43.5
unitig_899.g14936 Utricularia gibba HOM05D004560 ORTHO05D005540 3.0e-15 89.4 951 24.3
AagrBONN_evm.TU.Sc2ySwM_228.1624 Anthoceros agrestis HOM05D004560 ORTHO05D005540 2.0e-11 76.6 1060 23.5
unitig_899.g14937 Utricularia gibba HOM05D004560 ORTHO05D005540 3.4e-11 75.9 141 39.0
Cpa.g.sc55.156 Carica papaya HOM05D004560 ORTHO05D005540 1.0e-10 74.3 233 31.3
Rhsim08G0115000 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.0e-10 74.3 70 50.0
Sed0026550 Sechium edule HOM05D004560 ORTHO05D005540 4.2e-09 68.9 46 73.9
CDE08G0295 Ceratophyllum demersum HOM05D006253 ORTHO05D007666 5.5e-09 68.6 35 94.3
CBR_g34112 Chara braunii HOM05D000019 ORTHO05D137378 1.0e-07 64.3 54 55.6
unitig_736.g22379 Utricularia gibba HOM05D004560 ORTHO05D005540 3.0e-07 62.8 729 33.6
Actinidia16497 Actinidia chinensis HOM05D004560 ORTHO05D005540 5.7e-06 58.5 373 39.4
Psat1g018440 Pisum sativum HOM05D004560 ORTHO05D005540 5.7e-06 58.5 80 43.8
HPP92_004077 Vanilla planifolia HOM05D004560 ORTHO05D005540 9.7e-06 57.8 473 32.8


User provided reference genes

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