Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G1157 Ceratophyllum demersum HOM05D005152 ORTHO05D006162 0.0e+00 1168.3 596 100.0
CDE07G1900 Ceratophyllum demersum HOM05D005152 ORTHO05D006162 3.9e-212 741.9 429 88.8
Nn7g36798 Nelumbo nucifera HOM05D005152 ORTHO05D006162 6.0e-112 409.1 626 41.7
Hund07432 Selenicereus undatus HOM05D005152 ORTHO05D006162 1.2e-99 368.2 644 38.7
Gohir.D03G176100 Gossypium hirsutum HOM05D005152 ORTHO05D006162 5.8e-99 365.9 629 38.8
Gorai.003G185300 Gossypium raimondii HOM05D005152 ORTHO05D006162 8.3e-98 362.1 629 38.5
QL01p016753 Quercus lobata HOM05D005152 ORTHO05D006162 2.4e-97 360.5 638 37.9
MBI19_g42986_MAGBIO Magnolia biondii HOM05D005152 ORTHO05D006162 2.1e-96 357.5 646 39.0
Eucgr.J00691 Eucalyptus grandis HOM05D005152 ORTHO05D006162 6.0e-96 355.9 620 37.6
TAR636G3031 Trochodendron aralioides HOM05D005152 ORTHO05D006162 2.3e-95 354.0 603 38.1
Ah.06g194700 Amaranthus hybridus HOM05D005152 ORTHO05D006178 1.1e-94 351.7 601 38.9
Gohir.A03G000034 Gossypium hirsutum HOM05D005152 ORTHO05D006162 1.1e-94 351.7 629 38.0
COL.COLO4_16941 Corchorus olitorius HOM05D005152 ORTHO05D006162 3.3e-94 350.1 629 38.2
Thecc.03G310200 Theobroma cacao HOM05D005152 ORTHO05D006162 2.4e-92 344.0 644 37.1
SalBow4G0649 Salvia bowleyana HOM05D005152 ORTHO05D006162 3.1e-92 343.6 637 37.5
EL10Ac4g10101 Beta vulgaris HOM05D005152 ORTHO05D006162 8.9e-92 342.0 640 38.1
Actinidia24470 Actinidia chinensis HOM05D005152 ORTHO05D006162 1.2e-91 341.7 626 38.2
MSTRG.20931 Avicennia marina HOM05D005152 ORTHO05D006162 2.0e-91 340.9 637 35.8
LjContig00564g0003451 Lotus japonicus HOM05D005152 ORTHO05D006162 2.0e-91 340.9 647 37.1
CAN.G1514.1 Capsicum annuum HOM05D005152 ORTHO05D006162 2.6e-91 340.5 631 37.2
Ciclev10014592m.g Citrus clementina HOM05D005152 ORTHO05D006162 4.4e-91 339.7 641 37.4
Lsat_1_v5_gn_2_33000 Lactuca sativa HOM05D005152 ORTHO05D006162 4.4e-91 339.7 619 37.8
Sopen07g023910 Solanum pennellii HOM05D005152 ORTHO05D006162 5.8e-91 339.3 629 38.6
Haze_23256 Corylus avellana HOM05D005152 ORTHO05D006162 2.2e-90 337.4 638 37.8
PGSC0003DMG400017379 Solanum tuberosum HOM05D005152 ORTHO05D006162 3.8e-90 336.7 628 37.3
Solyc07g045370.3 Solanum lycopersicum HOM05D005152 ORTHO05D006162 6.4e-90 335.9 628 37.4
Potri.009G067800 Populus trichocarpa HOM05D005152 ORTHO05D006162 3.2e-89 333.6 640 37.5
Potri.001G273600 Populus trichocarpa HOM05D005152 ORTHO05D006162 5.4e-89 332.8 634 37.7
TWI75G0576 Tripterygium wilfordii HOM05D005152 ORTHO05D006162 1.2e-88 331.6 643 37.2
PSO339G4523 Papaver somniferum HOM05D005152 ORTHO05D006162 2.1e-88 330.9 631 36.0
vmacro12803 Vaccinium macrocarpon HOM05D005152 ORTHO05D006162 3.5e-88 330.1 629 37.8
Aqoxy1G00386 Aquilegia oxysepala HOM05D005152 ORTHO05D006162 2.3e-87 327.4 659 34.7
FvH4_5g29960 Fragaria vesca HOM05D005152 ORTHO05D006162 3.9e-87 326.6 652 37.0
PSO384G2750 Papaver somniferum HOM05D005152 ORTHO05D006162 1.9e-86 324.3 631 35.3
Ca_06203_v3 Cicer arietinum L. HOM05D005152 ORTHO05D006162 2.5e-86 323.9 646 35.9
Ca_06206_v3 Cicer arietinum L. HOM05D005152 ORTHO05D006162 2.5e-86 323.9 646 35.9
Manes.02G136600 Manihot esculenta HOM05D005152 ORTHO05D006162 3.3e-86 323.6 642 36.9
FAN08G2618 Fragaria x ananassa HOM05D005152 ORTHO05D006162 4.3e-86 323.2 665 36.4
Peaxi162Scf00014g00212 Petunia axillaris HOM05D005152 ORTHO05D006162 5.6e-86 322.8 657 35.2
FAN13G1175 Fragaria x ananassa HOM05D005152 ORTHO05D006162 9.6e-86 322.0 677 36.0
arahy.Tifrunner.gnm1.ann1.3CD1QA Arachis hypogaea HOM05D005152 ORTHO05D006162 1.3e-85 321.6 663 35.9
Lj2C487T6 Lonicera japonica HOM05D005152 ORTHO05D006162 1.6e-85 321.2 628 36.9
Prupe.4G267500 Prunus persica HOM05D005152 ORTHO05D006162 1.6e-85 321.2 637 35.6
Aqoxy7G02965 Aquilegia oxysepala HOM05D005152 ORTHO05D006162 2.1e-85 320.9 651 34.7
AUR62006555 Chenopodium quinoa HOM05D005152 ORTHO05D006162 3.6e-85 320.1 628 35.4
FAN04G0382 Fragaria x ananassa HOM05D005152 ORTHO05D006162 8.1e-85 318.9 644 36.3
Nitab4.5_0000236g0070 Nicotiana tabacum HOM05D005152 ORTHO05D006162 1.1e-84 318.5 635 35.6
arahy.Tifrunner.gnm1.ann1.NHHR58 Arachis hypogaea HOM05D005152 ORTHO05D006162 1.8e-84 317.8 656 35.8
Lalb_Chr10g0106191 Lupinus albus HOM05D005152 ORTHO05D006162 2.4e-84 317.4 635 35.6
Sed0006572 Sechium edule HOM05D005152 ORTHO05D006162 2.4e-84 317.4 643 37.0
MELO3C014552.2 Cucumis melo HOM05D005152 ORTHO05D006162 4.0e-84 316.6 643 36.9
AUR62000209 Chenopodium quinoa HOM05D005152 ORTHO05D006162 5.3e-84 316.2 630 36.3
Cfa009894 Carpinus fangiana HOM05D005152 ORTHO05D006162 6.9e-84 315.8 640 35.9
HanXRQChr14g0432261 Helianthus annuus HOM05D005152 ORTHO05D006162 1.5e-83 314.7 629 36.7
Glyma.14G036100 Glycine max HOM05D005152 ORTHO05D006162 4.4e-83 313.2 655 35.4
Duzib205G1611 Durio zibethinus HOM05D005152 ORTHO05D006162 5.8e-83 312.8 647 35.9
Sabra09G0050800 Salix brachista HOM05D005152 ORTHO05D006162 1.3e-82 311.6 680 34.7
DCAR_002098 Daucus carota HOM05D005152 ORTHO05D006162 1.7e-82 311.2 620 35.5
RcHm_v2.0_Chr7g0223811 Rosa chinensis HOM05D005152 ORTHO05D006162 1.7e-82 311.2 640 36.1
ClCG02G022750 Citrullus lanatus HOM05D005152 ORTHO05D006162 8.4e-82 308.9 648 36.3
MD15G1434100 Malus domestica HOM05D005152 ORTHO05D006162 1.4e-81 308.1 632 34.2
CsaV3_6G038870 Cucumis sativus L. HOM05D005152 ORTHO05D006162 2.4e-81 307.4 642 36.1
Phvul.008G202300 Phaseolus vulgaris HOM05D005152 ORTHO05D006162 5.4e-81 306.2 650 34.3
Glyma.02G278500 Glycine max HOM05D005152 ORTHO05D006162 1.6e-80 304.7 641 35.9
VMungo0647G0059 Vigna mungo HOM05D005152 ORTHO05D006162 3.5e-80 303.5 547 38.2
Sc09g0005710 Simmondsia chinensis HOM05D005152 ORTHO05D006162 4.6e-80 303.1 533 36.6
ECA238G0396 Erigeron canadensis HOM05D005152 ORTHO05D006162 1.1e-78 298.5 627 35.2
Psat2g020920 Pisum sativum HOM05D005152 ORTHO05D006162 2.5e-78 297.4 636 35.7
Oeu046802.1 Olea europaea HOM05D005152 ORTHO05D006162 3.3e-78 297.0 529 39.7
GSVIVG01029300001 Vitis vinifera HOM05D005152 ORTHO05D006162 3.3e-78 297.0 544 38.4
Migut.A00480 Erythranthe guttata HOM05D005152 ORTHO05D006162 2.1e-77 294.3 637 34.7
TPR.G16391 Trifolium pratense HOM05D005152 ORTHO05D006162 6.2e-77 292.7 638 34.3
ATR1096G100 Amborella trichopoda HOM05D005152 ORTHO05D006162 1.5e-75 288.1 647 32.8
CANSAT11G0534 Cannabis sativa HOM05D005152 ORTHO05D006162 4.5e-75 286.6 622 32.6
FAN18G0878 Fragaria x ananassa HOM05D005152 ORTHO05D006162 1.7e-74 284.6 695 33.7
Medtr5g089190 Medicago truncatula HOM05D005152 ORTHO05D006162 1.7e-74 284.6 638 34.2
CARHR200900 Cardamine hirsuta HOM05D005152 ORTHO05D006162 3.9e-71 273.5 591 32.8
CiPaw.14G111400 Carya illinoinensis HOM05D005152 ORTHO05D006162 6.7e-71 272.7 542 37.5
Nitab4.5_0000975g0020 Nicotiana tabacum HOM05D005152 ORTHO05D006162 1.1e-70 271.9 618 34.1
HPP92_019896 Vanilla planifolia HOM05D005152 ORTHO05D006162 4.3e-70 270.0 618 34.6
Carub.0006s1072 Capsella rubella HOM05D005152 ORTHO05D006162 7.4e-70 269.2 588 32.8
Prupe.3G132200 Prunus persica HOM05D005152 ORTHO05D006162 8.1e-69 265.8 433 40.0
Sp6g31420 Schrenkiella parvula HOM05D005152 ORTHO05D006162 8.1e-69 265.8 641 32.1
THA.LOC104799141 Tarenaya hassleriana HOM05D005152 ORTHO05D006162 3.1e-68 263.8 636 32.5
THA.LOC104816332 Tarenaya hassleriana HOM05D005152 ORTHO05D006162 4.0e-68 263.5 525 35.8
AT5G12220 Arabidopsis thaliana HOM05D005152 ORTHO05D006162 1.2e-67 261.9 591 32.1
Rhsim13G0207600 Rhododendron simsii HOM05D005152 ORTHO05D006162 1.7e-66 258.1 347 45.8
Thhalv10012989m.g Eutrema salsugineum HOM05D005152 ORTHO05D006162 2.5e-65 254.2 643 31.9
AL6G23010 Arabidopsis lyrata HOM05D005152 ORTHO05D006162 9.3e-65 252.3 592 31.6
Aa31LG3G15010 Aethionema arabicum HOM05D005152 ORTHO05D006162 3.5e-64 250.4 656 32.2
A03p05460 Brassica napus HOM05D005152 ORTHO05D006162 7.9e-64 249.2 531 33.7
Dinv36154 Davidia involucrata HOM05D005152 ORTHO05D006162 7.9e-64 249.2 505 37.0
Cc02_g30140 Coffea canephora HOM05D005152 ORTHO05D006162 1.0e-63 248.8 336 47.0
Os12g0189900 Oryza sativa ssp. japonica HOM05D005152 ORTHO05D006162 3.9e-63 246.9 629 31.6
BolC3t13143H Brassica oleracea HOM05D005152 ORTHO05D006162 8.7e-63 245.7 585 31.6
PGR119G0699 Punica granatum HOM05D005152 ORTHO05D006162 1.9e-62 244.6 626 30.8
C03p06370 Brassica napus HOM05D005152 ORTHO05D006162 2.5e-62 244.2 532 33.3
BraA03t09884Z Brassica rapa HOM05D005152 ORTHO05D006162 3.3e-62 243.8 536 33.2
Zm00001eb150380 Zea mays HOM05D005152 ORTHO05D006162 1.6e-61 241.5 616 31.0
BcaB01g05418 Brassica carinata HOM05D005152 ORTHO05D006162 4.5e-59 233.4 608 30.8
MD08G1241200 Malus domestica HOM05D005152 ORTHO05D006162 1.7e-58 231.5 362 40.9
Oeu022376.1 Olea europaea HOM05D005152 ORTHO05D006162 1.6e-53 214.9 533 35.1
SEGI_04037 Sequoiadendron giganteum HOM05D005152 ORTHO05D006162 4.8e-53 213.4 584 28.9
unitig_748.g8148 Utricularia gibba HOM05D005152 ORTHO05D006162 6.3e-53 213.0 590 31.0
Atru.chr11.1399 Acer truncatum HOM05D005152 ORTHO05D006162 1.7e-45 188.3 194 49.5
TAR633G1644 Trochodendron aralioides HOM05D005152 ORTHO05D006162 3.9e-39 167.2 150 58.7
Atru.chr11.1591 Acer truncatum HOM05D005152 ORTHO05D006162 2.4e-36 157.9 415 30.8
Sc09g0005740 Simmondsia chinensis HOM05D005152 ORTHO05D006162 4.5e-35 153.7 150 52.0
Pp3c5_25710 Physcomitrium patens HOM05D005152 ORTHO05D006162 3.8e-34 150.6 556 25.9
Pp3c25_13080 Physcomitrium patens HOM05D005152 ORTHO05D006162 1.4e-31 142.1 168 39.9
Mapoly0027s0150 Marchantia polymorpha HOM05D005152 ORTHO05D006162 2.3e-31 141.4 319 30.7
Sc09g0005650 Simmondsia chinensis HOM05D005152 ORTHO05D006162 4.0e-31 140.6 281 36.7
AagrBONN_evm.TU.Sc2ySwM_228.1465 Anthoceros agrestis HOM05D005152 ORTHO05D006162 2.0e-30 138.3 463 26.3
Cpa.g.c26789.2 Carica papaya HOM05D005152 ORTHO05D006162 3.7e-29 134.0 430 28.8
SGA_v2.0_scaffold96G29125 Striga asiatica HOM05D005152 ORTHO05D006162 1.4e-28 132.1 122 50.8
SMO361G0105 Selaginella moellendorffii HOM05D005152 ORTHO05D006162 4.5e-27 127.1 570 23.9
MCO05G618 Micromonas commoda HOM05D005152 ORTHO05D006162 9.8e-22 109.4 161 35.4
GSVIVG01029301001 Vitis vinifera HOM05D005152 ORTHO05D006162 2.4e-20 104.8 66 66.7
SGA_v2.0_scaffold79G25574 Striga asiatica HOM05D005152 ORTHO05D006162 1.2e-19 102.4 69 60.9
CAN.G437.19 Capsicum annuum HOM05D005152 ORTHO05D006162 2.0e-19 101.7 63 66.7
Oeu046803.1 Olea europaea HOM05D005152 ORTHO05D006162 1.0e-18 99.4 70 57.1
A02p39210 Brassica napus HOM05D005152 ORTHO05D006162 5.0e-18 97.1 416 24.8
Sc09g0005660 Simmondsia chinensis HOM05D005152 ORTHO05D006162 1.5e-17 95.5 65 69.2
Sabra16G0168500 Salix brachista HOM05D005152 ORTHO05D006162 1.2e-16 92.4 372 27.2
MD08G1241100 Malus domestica HOM05D005152 ORTHO05D006162 1.4e-15 89.0 243 30.9
Rhsim13G0207500 Rhododendron simsii HOM05D005152 ORTHO05D006162 1.4e-15 89.0 285 29.5
Cre01.g002201 Chlamydomonas reinhardtii HOM05D005152 ORTHO05D006162 8.8e-15 86.3 228 23.2
Sc09g0005720 Simmondsia chinensis HOM05D005152 ORTHO05D006162 2.0e-14 85.1 66 54.5
Atru.chr10.529 Acer truncatum HOM05D005152 ORTHO05D006162 7.5e-14 83.2 402 24.6
Atru.chr11.1397 Acer truncatum HOM05D005152 ORTHO05D006162 2.7e-11 74.7 191 29.3
Sc09g0005670 Simmondsia chinensis HOM05D005152 ORTHO05D006162 5.9e-11 73.6 157 31.8
Oeu053695.1 Olea europaea HOM05D005152 ORTHO05D006162 7.2e-09 66.6 186 28.0
Aqoxy4G01955 Aquilegia oxysepala HOM05D005152 ORTHO05D006162 3.6e-08 64.3 58 55.2
Hma1.2p1_0460F.1_g157490 Hydrangea macrophylla HOM05D005152 ORTHO05D006162 6.1e-08 63.5 168 28.6
Atru.chr11.1398 Acer truncatum HOM05D005152 ORTHO05D006162 3.0e-07 61.2 154 30.5
Cpa.g.sc189.1 Carica papaya HOM05D005152 ORTHO05D006162 9.8e-06 56.2 42 57.1
Cfa025982 Carpinus fangiana HOM05D005152 ORTHO05D006162 9.8e-06 56.2 149 25.5
Hund07429 Selenicereus undatus HOM05D005152 ORTHO05D006162 9.8e-06 56.2 38 57.9


User provided reference genes

Program Settings