Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G1080 Ceratophyllum demersum HOM05D005825 ORTHO05D006483 3.4e-178 628.2 323 100.0
Lalb_Chr13g0301881 Lupinus albus HOM05D005825 ORTHO05D006483 3.6e-119 432.2 326 67.8
MBI16_g24711_MAGBIO Magnolia biondii HOM05D005825 ORTHO05D006483 7.9e-119 431.0 325 69.8
Nn2g12789 Nelumbo nucifera HOM05D005825 ORTHO05D006483 3.3e-117 425.6 331 66.8
Phvul.003G164300 Phaseolus vulgaris HOM05D005825 ORTHO05D006483 3.3e-117 425.6 326 69.0
Sed0008025 Sechium edule HOM05D005825 ORTHO05D006483 3.3e-117 425.6 323 69.0
DCAR_009187 Daucus carota HOM05D005825 ORTHO05D006483 1.3e-116 423.7 323 67.8
PSO675G5818 Papaver somniferum HOM05D005825 ORTHO05D006483 3.7e-116 422.2 326 66.3
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 4.8e-116 421.8 328 67.4
Glyma.13G167400 Glycine max HOM05D005825 ORTHO05D006483 4.8e-116 421.8 328 68.0
Cfa003372 Carpinus fangiana HOM05D005825 ORTHO05D006483 1.1e-115 420.6 325 67.7
Ca_21683_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 1.1e-115 420.6 330 68.5
Aqoxy5G01398 Aquilegia oxysepala HOM05D005825 ORTHO05D006483 1.4e-115 420.2 322 66.8
Peaxi162Scf00157g01524 Petunia axillaris HOM05D005825 ORTHO05D006483 1.4e-115 420.2 325 68.9
PGR142G1018 Punica granatum HOM05D005825 ORTHO05D006483 2.4e-115 419.5 325 66.5
ClCG11G003030 Citrullus lanatus HOM05D005825 ORTHO05D006483 6.9e-115 417.9 323 69.0
MELO3C004508.2 Cucumis melo HOM05D005825 ORTHO05D006483 9.1e-115 417.5 323 68.1
Medtr4g114160 Medicago truncatula HOM05D005825 ORTHO05D006483 1.2e-114 417.2 327 68.2
THA.LOC104815280 Tarenaya hassleriana HOM05D005825 ORTHO05D006483 1.2e-114 417.2 325 64.9
PSO782G3266 Papaver somniferum HOM05D005825 ORTHO05D006483 1.5e-114 416.8 326 65.3
vmacro20556 Vaccinium macrocarpon HOM05D005825 ORTHO05D006483 2.0e-114 416.4 324 65.4
CiPaw.03G244100 Carya illinoinensis HOM05D005825 ORTHO05D006483 3.4e-114 415.6 325 67.7
Lalb_Chr12g0197941 Lupinus albus HOM05D005825 ORTHO05D006483 3.4e-114 415.6 323 66.3
VMungo1215G3451 Vigna mungo HOM05D005825 ORTHO05D006483 3.4e-114 415.6 326 66.9
Carub.0004s0696 Capsella rubella HOM05D005825 ORTHO05D006483 7.7e-114 414.5 326 65.6
TWI34G0282 Tripterygium wilfordii HOM05D005825 ORTHO05D006483 7.7e-114 414.5 332 66.3
arahy.Tifrunner.gnm1.ann1.1NB5KJ Arachis hypogaea HOM05D005825 ORTHO05D006483 1.0e-113 414.1 323 66.9
CsaV3_2G002850 Cucumis sativus L. HOM05D005825 ORTHO05D006483 2.2e-113 412.9 323 67.8
Oeu007499.1 Olea europaea HOM05D005825 ORTHO05D006483 2.2e-113 412.9 331 64.7
Rhsim01G0070600 Rhododendron simsii HOM05D005825 ORTHO05D006483 2.2e-113 412.9 323 65.0
CANSAT11G1244 Cannabis sativa HOM05D005825 ORTHO05D006483 5.0e-113 411.8 326 65.0
Lj4g0013357 Lotus japonicus HOM05D005825 ORTHO05D006483 5.0e-113 411.8 326 66.9
Psat4g040200 Pisum sativum HOM05D005825 ORTHO05D006483 5.0e-113 411.8 330 67.6
CAN.G1591.11 Capsicum annuum HOM05D005825 ORTHO05D006483 8.5e-113 411.0 322 66.5
Hund09127 Selenicereus undatus HOM05D005825 ORTHO05D006483 8.5e-113 411.0 323 66.9
Atru.chr7.1162 Acer truncatum HOM05D005825 ORTHO05D006483 1.1e-112 410.6 325 66.5
EL10Ac8g18654 Beta vulgaris HOM05D005825 ORTHO05D006483 1.1e-112 410.6 323 65.9
Cpa.g.sc75.29 Carica papaya HOM05D005825 ORTHO05D006483 1.1e-112 410.6 325 64.6
arahy.Tifrunner.gnm1.ann1.9UEQ51 Arachis hypogaea HOM05D005825 ORTHO05D006483 1.4e-112 410.2 323 65.9
Solyc12g009430.2 Solanum lycopersicum HOM05D005825 ORTHO05D006483 1.4e-112 410.2 326 65.6
MD02G1032800 Malus domestica HOM05D005825 ORTHO05D006483 1.9e-112 409.8 327 66.1
Sopen12g004430 Solanum pennellii HOM05D005825 ORTHO05D006483 1.9e-112 409.8 326 65.3
Dinv36528 Davidia involucrata HOM05D005825 ORTHO05D006483 2.5e-112 409.5 327 65.1
Sp4g09150 Schrenkiella parvula HOM05D005825 ORTHO05D006483 3.2e-112 409.1 325 64.6
A04p21320 Brassica napus HOM05D005825 ORTHO05D006483 4.2e-112 408.7 328 64.9
BraA04t17698Z Brassica rapa HOM05D005825 ORTHO05D006483 4.2e-112 408.7 328 64.9
AL4G19680 Arabidopsis lyrata HOM05D005825 ORTHO05D006483 7.2e-112 407.9 332 64.2
TAR625G0074 Trochodendron aralioides HOM05D005825 ORTHO05D006483 7.2e-112 407.9 325 66.8
Manes.06G058801 Manihot esculenta HOM05D005825 ORTHO05D006483 9.4e-112 407.5 328 65.2
MSTRG.19597 Avicennia marina HOM05D005825 ORTHO05D006483 2.7e-111 406.0 323 63.5
AT2G26680 Arabidopsis thaliana HOM05D005825 ORTHO05D006483 3.6e-111 405.6 326 65.6
Rhsim01G0071200 Rhododendron simsii HOM05D005825 ORTHO05D006483 3.6e-111 405.6 330 63.9
SalBow3G4290 Salvia bowleyana HOM05D005825 ORTHO05D006483 6.1e-111 404.8 323 64.7
Thecc.09G126400 Theobroma cacao HOM05D005825 ORTHO05D006483 6.1e-111 404.8 329 64.7
Actinidia40470 Actinidia chinensis HOM05D005825 ORTHO05D006483 7.9e-111 404.4 325 64.3
arahy.Tifrunner.gnm1.ann1.85XGXJ Arachis hypogaea HOM05D005825 ORTHO05D006483 7.9e-111 404.4 323 65.3
Ciclev10008932m.g Citrus clementina HOM05D005825 ORTHO05D006483 7.9e-111 404.4 325 65.5
Duzib168G1077 Durio zibethinus HOM05D005825 ORTHO05D006483 7.9e-111 404.4 329 64.7
Gorai.010G064100 Gossypium raimondii HOM05D005825 ORTHO05D006483 7.9e-111 404.4 329 65.3
Migut.B01717 Erythranthe guttata HOM05D005825 ORTHO05D006483 2.3e-110 402.9 324 64.5
Thhalv10002044m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 2.3e-110 402.9 326 64.4
Gohir.D06G054601 Gossypium hirsutum HOM05D005825 ORTHO05D006483 2.3e-110 402.9 329 65.0
Potri.014G017900 Populus trichocarpa HOM05D005825 ORTHO05D006483 2.3e-110 402.9 326 66.9
CSS0017066 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 3.0e-110 402.5 325 63.4
Sabra02G0094300 Salix brachista HOM05D005825 ORTHO05D006483 3.9e-110 402.1 324 66.0
arahy.Tifrunner.gnm1.ann1.R6UVTB Arachis hypogaea HOM05D005825 ORTHO05D006483 6.7e-110 401.4 323 65.0
C04p57230 Brassica napus HOM05D005825 ORTHO05D006483 6.7e-110 401.4 327 64.2
CSS0027185 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 6.7e-110 401.4 327 63.0
Sabra14G0011800 Salix brachista HOM05D005825 ORTHO05D006483 1.1e-109 400.6 324 65.7
RcHm_v2.0_Chr2g0088431 Rosa chinensis HOM05D005825 ORTHO05D006483 3.3e-109 399.1 330 65.2
BcaB06g28186 Brassica carinata HOM05D005825 ORTHO05D006483 4.4e-109 398.7 325 63.1
PGSC0003DMG400002918 Solanum tuberosum HOM05D005825 ORTHO05D006483 9.7e-109 397.5 323 64.7
BolC4t27250H Brassica oleracea HOM05D005825 ORTHO05D006483 2.2e-108 396.4 327 63.9
Eucgr.C01173 Eucalyptus grandis HOM05D005825 ORTHO05D006483 2.2e-108 396.4 328 64.9
Lsat_1_v5_gn_8_58680 Lactuca sativa HOM05D005825 ORTHO05D006483 2.8e-108 396.0 325 64.3
Lj2C942T8 Lonicera japonica HOM05D005825 ORTHO05D006483 3.7e-108 395.6 352 62.2
FAN19G0135 Fragaria x ananassa HOM05D005825 ORTHO05D006483 6.3e-108 394.8 329 64.4
BcaC02g08209 Brassica carinata HOM05D005825 ORTHO05D006483 8.2e-108 394.4 326 62.6
FvH4_1g03280 Fragaria vesca HOM05D005825 ORTHO05D006483 1.1e-107 394.0 329 64.1
Gohir.A06G056101 Gossypium hirsutum HOM05D005825 ORTHO05D006483 1.4e-107 393.7 332 63.3
Sc08g0006620 Simmondsia chinensis HOM05D005825 ORTHO05D006483 1.4e-107 393.7 327 63.6
DCAR_017816 Daucus carota HOM05D005825 ORTHO05D006483 5.3e-107 391.7 363 59.5
Nitab4.5_0002658g0050 Nicotiana tabacum HOM05D005825 ORTHO05D006483 5.3e-107 391.7 316 65.5
Prupe.7G242700 Prunus persica HOM05D005825 ORTHO05D006483 5.3e-107 391.7 329 64.1
Nitab4.5_0014105g0010 Nicotiana tabacum HOM05D005825 ORTHO05D006483 7.0e-107 391.3 316 65.5
Hma1.2p1_0018F.1_g012420 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 1.2e-106 390.6 323 64.1
SGA_v2.0_scaffold299G47720 Striga asiatica HOM05D005825 ORTHO05D006483 1.2e-106 390.6 323 62.8
FAN23G1198 Fragaria x ananassa HOM05D005825 ORTHO05D006483 1.6e-106 390.2 329 64.4
Hma1.2p1_2368F.1_g320700 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 1.6e-106 390.2 323 64.1
FAN28G2006 Fragaria x ananassa HOM05D005825 ORTHO05D006483 2.0e-106 389.8 327 64.5
ATR0225G021 Amborella trichopoda HOM05D005825 ORTHO05D006483 4.5e-106 388.7 262 74.4
FAN26G2420 Fragaria x ananassa HOM05D005825 ORTHO05D006483 7.7e-106 387.9 329 64.1
Thhalv10023596m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 1.7e-105 386.7 331 61.3
unitig_748.g8100 Utricularia gibba HOM05D005825 ORTHO05D006483 2.2e-105 386.3 323 63.5
Lj2A929T15 Lonicera japonica HOM05D005825 ORTHO05D006483 3.8e-105 385.6 352 61.9
AUR62013360 Chenopodium quinoa HOM05D005825 ORTHO05D006483 6.5e-105 384.8 284 70.1
HPP92_017605 Vanilla planifolia HOM05D005825 ORTHO05D006483 1.9e-104 383.3 326 63.8
Ah.09g226210 Amaranthus hybridus HOM05D005825 ORTHO05D006483 3.0e-102 375.9 323 58.5
Os03g0566600 Oryza sativa ssp. japonica HOM05D005825 ORTHO05D006483 4.0e-102 375.6 264 70.8
HanXRQChr17g0537711 Helianthus annuus HOM05D005825 ORTHO05D006483 1.8e-99 366.7 327 59.9
Zm00001eb043030 Zea mays HOM05D005825 ORTHO05D006483 1.8e-99 366.7 266 68.4
HanXRQChr17g0537731 Helianthus annuus HOM05D005825 ORTHO05D006483 7.0e-99 364.8 323 59.8
Haze_25579 Corylus avellana HOM05D005825 ORTHO05D006483 1.5e-96 357.1 325 60.6
SHI03392 Sapria himalayana HOM05D005825 ORTHO05D006483 2.3e-94 349.7 384 51.3
QL10p023454 Quercus lobata HOM05D005825 ORTHO05D006483 1.7e-92 343.6 504 43.5
AUR62011128 Chenopodium quinoa HOM05D005825 ORTHO05D006483 5.4e-91 338.6 325 57.8
HanXRQChr06g0180341 Helianthus annuus HOM05D005825 ORTHO05D006483 4.7e-87 325.5 294 58.2
SMO147G0115 Selaginella moellendorffii HOM05D005825 ORTHO05D006483 4.0e-86 322.4 257 60.7
AagrBONN_evm.TU.Sc2ySwM_344.1792 Anthoceros agrestis HOM05D005825 ORTHO05D006483 4.5e-82 308.9 266 56.0
Potri.002G119800 Populus trichocarpa HOM05D005825 ORTHO05D006483 6.8e-78 295.0 191 77.0
TPR.G10697 Trifolium pratense HOM05D005825 ORTHO05D006483 1.1e-75 287.7 185 77.3
ECA246G2031 Erigeron canadensis HOM05D000004 ORTHO05D000002 2.4e-75 286.6 197 72.6
CiPaw.04G171000 Carya illinoinensis HOM05D005825 ORTHO05D006483 7.0e-75 285.0 175 79.4
GSVIVG01015529001 Vitis vinifera HOM05D005825 ORTHO05D006483 8.6e-73 278.1 167 81.4
Glyma.17G115000 Glycine max HOM05D005825 ORTHO05D006483 1.9e-72 276.9 178 78.7
Cc06_g08520 Coffea canephora HOM05D005825 ORTHO05D006483 3.4e-69 266.2 167 74.9
CARHR118580 Cardamine hirsuta HOM05D005825 ORTHO05D006483 5.4e-59 232.3 208 61.1
Actinidia21988 Actinidia chinensis HOM05D005825 ORTHO05D006483 1.5e-48 197.6 122 76.2
Ca_13270_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 1.1e-46 191.4 186 58.6
VMungo0647G0470 Vigna mungo HOM05D005825 ORTHO05D006483 8.4e-44 181.8 136 66.2
CARHR118590 Cardamine hirsuta HOM05D005825 ORTHO05D006483 1.1e-43 181.4 121 72.7
Eucgr.G00617 Eucalyptus grandis HOM05D005825 ORTHO05D006483 3.2e-43 179.9 119 74.8
Ca_14592_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 6.0e-42 175.6 183 57.9
Eucgr.B02426 Eucalyptus grandis HOM05D005825 ORTHO05D006483 6.0e-42 175.6 119 72.3
Eucgr.C03225 Eucalyptus grandis HOM05D005825 ORTHO05D006483 5.3e-38 162.5 113 69.9
Eucgr.E01840 Eucalyptus grandis HOM05D005825 ORTHO05D006483 1.8e-33 147.5 119 65.5
Eucgr.B02447 Eucalyptus grandis HOM05D005825 ORTHO05D006483 3.3e-32 143.3 95 76.8
TAR381G0761 Trochodendron aralioides HOM05D005825 ORTHO05D006483 9.3e-27 125.2 153 49.7
CAN.G204.2 Capsicum annuum HOM05D005825 ORTHO05D006483 2.9e-20 103.6 71 70.4
Zm00001eb219900 Zea mays HOM05D005825 ORTHO05D006483 1.1e-11 75.1 160 35.6
SalBow6G2945 Salvia bowleyana HOM05D000060 ORTHO05D000082 2.1e-10 70.9 124 37.9
MCO17G084 Micromonas commoda HOM05D051517 ORTHO05D006483 3.6e-10 70.1 201 27.9
VMungo0464G1687 Vigna mungo HOM05D005825 ORTHO05D006483 3.6e-10 70.1 108 37.0
Cre12.g488550 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 1.9e-08 64.3 143 32.2
Cre09.g386756 Chlamydomonas reinhardtii HOM05D005825 ORTHO05D006483 2.2e-07 60.8 178 27.5
Cre02.g103000 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 2.4e-06 57.4 151 31.1
PRCOL_00003044 Prasinoderma coloniale HOM05D024924 ORTHO05D006483 3.1e-06 57.0 228 25.9
vmacro22117 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 9.1e-06 55.5 51 58.8


User provided reference genes

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