Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G1002 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 1.4e-306 1055.4 515 100.0
CDE06G2086 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 3.4e-233 811.6 487 83.2
TAR623G0028 Trochodendron aralioides HOM05D003877 ORTHO05D004647 1.0e-197 693.7 511 66.5
Nn7g35848 Nelumbo nucifera HOM05D003877 ORTHO05D004647 8.0e-190 667.5 508 64.6
TAR633G0464 Trochodendron aralioides HOM05D003877 ORTHO05D004647 2.3e-189 666.0 469 67.2
PSO801G0566 Papaver somniferum HOM05D003877 ORTHO05D004647 1.3e-187 660.2 463 67.8
Aqoxy2G01450 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 2.9e-187 659.1 482 66.2
Aqoxy1G01313 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 2.0e-185 652.9 486 65.4
ATR0068G102 Amborella trichopoda HOM05D003877 ORTHO05D004647 3.5e-185 652.1 506 62.6
CSS0042673 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 7.8e-185 651.0 512 63.1
MD01G1157500 Malus domestica HOM05D003877 ORTHO05D004647 1.3e-184 650.2 496 64.3
GSVIVG01032757001 Vitis vinifera HOM05D003877 ORTHO05D004647 1.3e-184 650.2 492 64.0
Gorai.010G195300 Gossypium raimondii HOM05D003877 ORTHO05D004647 3.0e-184 649.0 491 63.7
Dinv10589 Davidia involucrata HOM05D003877 ORTHO05D004647 5.0e-184 648.3 503 62.8
GSVIVG01032758001 Vitis vinifera HOM05D003877 ORTHO05D004647 5.0e-184 648.3 491 64.4
Gohir.A06G161800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.1e-183 647.1 491 63.7
Thecc.10G011300 Theobroma cacao HOM05D003877 ORTHO05D004647 1.9e-183 646.4 466 66.3
Gorai.012G079000 Gossypium raimondii HOM05D003877 ORTHO05D004647 2.5e-183 646.0 506 62.8
TWI73G0349 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 3.3e-183 645.6 488 64.5
Duzib106G1591 Durio zibethinus HOM05D003877 ORTHO05D004647 4.3e-183 645.2 467 66.6
Gohir.D06G167400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 9.5e-183 644.0 491 63.5
Manes.10G009000 Manihot esculenta HOM05D003877 ORTHO05D004647 9.5e-183 644.0 518 62.4
FAN01G0819 Fragaria x ananassa HOM05D003877 ORTHO05D004647 8.9e-181 637.5 504 61.1
FAN10G2809 Fragaria x ananassa HOM05D003877 ORTHO05D004647 8.9e-181 637.5 504 61.1
TWI09G1304 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 1.2e-180 637.1 485 64.3
FvH4_7g25060 Fragaria vesca HOM05D003877 ORTHO05D004647 1.5e-180 636.7 496 62.1
Actinidia29719 Actinidia chinensis HOM05D003877 ORTHO05D004647 3.4e-180 635.6 499 62.9
vmacro17690 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 3.4e-180 635.6 474 63.9
Gohir.D04G070400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 4.4e-180 635.2 470 64.9
Os03g0818100 Oryza sativa ssp. japonica HOM05D003877 ORTHO05D004647 5.8e-180 634.8 513 62.0
arahy.Tifrunner.gnm1.ann1.EHZF9M Arachis hypogaea HOM05D003877 ORTHO05D004647 7.5e-180 634.4 471 64.5
FAN06G1542 Fragaria x ananassa HOM05D003877 ORTHO05D004647 7.5e-180 634.4 496 61.7
PGR142G4288 Punica granatum HOM05D003877 ORTHO05D004647 7.5e-180 634.4 503 62.2
RcHm_v2.0_Chr1g0370931 Rosa chinensis HOM05D003877 ORTHO05D004647 9.8e-180 634.0 507 61.3
Medtr3g071580 Medicago truncatula HOM05D003877 ORTHO05D004647 2.2e-179 632.9 479 64.1
FAN03G0426 Fragaria x ananassa HOM05D003877 ORTHO05D004647 2.9e-179 632.5 498 61.2
Zm00001eb062330 Zea mays HOM05D003877 ORTHO05D004647 2.9e-179 632.5 509 62.9
CANSAT56G2949 Cannabis sativa HOM05D003877 ORTHO05D004647 1.1e-178 630.6 498 60.8
Ciclev10031326m.g Citrus clementina HOM05D003877 ORTHO05D004647 1.4e-178 630.2 480 62.9
Lj6g0018000 Lotus japonicus HOM05D003877 ORTHO05D004647 1.9e-178 629.8 497 63.2
Cpa.g.sc19.135 Carica papaya HOM05D003877 ORTHO05D004647 4.1e-178 628.6 472 63.6
THA.LOC104810121 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 4.1e-178 628.6 488 61.9
arahy.Tifrunner.gnm1.ann1.ZCM4RK Arachis hypogaea HOM05D003877 ORTHO05D004647 5.4e-178 628.2 476 63.9
Nitab4.5_0003391g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 5.4e-178 628.2 500 62.0
Lsat_1_v5_gn_9_123441 Lactuca sativa HOM05D003877 ORTHO05D004647 9.2e-178 627.5 517 60.0
THA.LOC104824338 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 1.2e-177 627.1 464 63.8
arahy.Tifrunner.gnm1.ann1.EJG72V Arachis hypogaea HOM05D003877 ORTHO05D004647 2.1e-177 626.3 476 64.1
CiPaw.02G195400 Carya illinoinensis HOM05D003877 ORTHO05D004647 2.7e-177 625.9 504 62.1
Ca_15152_v3 Cicer arietinum L. HOM05D003877 ORTHO05D004647 2.7e-177 625.9 492 62.2
Rhsim03G0146600 Rhododendron simsii HOM05D003877 ORTHO05D004647 2.7e-177 625.9 478 63.0
QL08p063706 Quercus lobata HOM05D003877 ORTHO05D004647 6.0e-177 624.8 487 63.7
Lalb_Chr08g0231521 Lupinus albus HOM05D003877 ORTHO05D004647 7.8e-177 624.4 459 64.9
Lj1C785G15 Lonicera japonica HOM05D003877 ORTHO05D004647 1.0e-176 624.0 480 62.3
AL1G20470 Arabidopsis lyrata HOM05D003877 ORTHO05D004647 1.3e-176 623.6 502 60.8
Potri.008G072600 Populus trichocarpa HOM05D003877 ORTHO05D004647 1.3e-176 623.6 506 61.5
Haze_17269 Corylus avellana HOM05D003877 ORTHO05D004647 1.7e-176 623.2 480 64.6
Glyma.05G080100 Glycine max HOM05D003877 ORTHO05D004647 3.0e-176 622.5 474 65.0
Glyma.18G024700 Glycine max HOM05D003877 ORTHO05D004647 6.6e-176 621.3 466 64.8
Potri.010G184600 Populus trichocarpa HOM05D003877 ORTHO05D004647 6.6e-176 621.3 501 62.1
Phvul.006G048800 Phaseolus vulgaris HOM05D003877 ORTHO05D004647 1.5e-175 620.2 470 64.7
AT1G09870 Arabidopsis thaliana HOM05D003877 ORTHO05D004647 2.5e-175 619.4 502 60.2
Sopen05g031010 Solanum pennellii HOM05D003877 ORTHO05D004647 4.3e-175 618.6 500 61.0
Carub.0001s0925 Capsella rubella HOM05D003877 ORTHO05D004647 9.5e-175 617.5 502 59.6
Manes.07G134500 Manihot esculenta HOM05D003877 ORTHO05D004647 9.5e-175 617.5 490 62.4
PSO339G0345 Papaver somniferum HOM05D003877 ORTHO05D004647 2.8e-174 615.9 463 64.4
Sp1g08500 Schrenkiella parvula HOM05D003877 ORTHO05D004647 1.4e-173 613.6 483 61.7
CARHR009900 Cardamine hirsuta HOM05D003877 ORTHO05D004647 5.2e-173 611.7 470 62.6
Cc02_g06060 Coffea canephora HOM05D003877 ORTHO05D004647 6.8e-173 611.3 521 58.5
Sc11g0005270 Simmondsia chinensis HOM05D003877 ORTHO05D004647 6.8e-173 611.3 469 63.3
PGSC0003DMG400030038 Solanum tuberosum HOM05D003877 ORTHO05D004647 1.2e-172 610.5 489 60.3
Solyc06g050990.3 Solanum lycopersicum HOM05D003877 ORTHO05D004647 1.5e-172 610.1 468 62.6
Peaxi162Scf01149g00319 Petunia axillaris HOM05D003877 ORTHO05D004647 2.6e-172 609.4 461 62.3
Gohir.A05G331800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 5.8e-172 608.2 470 63.2
VMungo0540G0037 Vigna mungo HOM05D003877 ORTHO05D004647 7.5e-172 607.8 451 64.5
CAN.G1268.9 Capsicum annuum HOM05D003877 ORTHO05D004647 9.9e-172 607.4 515 58.4
Hund13891 Selenicereus undatus HOM05D003877 ORTHO05D004647 2.9e-171 605.9 468 62.8
Prupe.2G255400 Prunus persica HOM05D003877 ORTHO05D004647 4.9e-171 605.1 474 62.9
Nitab4.5_0000789g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 1.4e-170 603.6 476 61.8
Sopen06g016790 Solanum pennellii HOM05D003877 ORTHO05D004647 2.4e-170 602.8 468 62.0
AUR62012296 Chenopodium quinoa HOM05D003877 ORTHO05D004647 3.2e-170 602.4 490 61.2
Eucgr.G03086 Eucalyptus grandis HOM05D003877 ORTHO05D004647 3.2e-170 602.4 499 58.9
Thhalv10007485m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 3.2e-170 602.4 478 60.9
HanXRQChr08g0221971 Helianthus annuus HOM05D003877 ORTHO05D004647 5.4e-170 601.7 516 57.2
BraA06t23872Z Brassica rapa HOM05D003877 ORTHO05D004647 7.1e-170 601.3 497 59.6
Lalb_Chr23g0277091 Lupinus albus HOM05D003877 ORTHO05D004647 7.1e-170 601.3 506 59.3
Peaxi162Scf00284g00528 Petunia axillaris HOM05D003877 ORTHO05D004647 7.1e-170 601.3 473 60.7
Hund15887 Selenicereus undatus HOM05D003877 ORTHO05D004647 2.1e-169 599.7 468 62.4
DCAR_011841 Daucus carota HOM05D003877 ORTHO05D004647 3.5e-169 599.0 493 59.8
Sabra10G0141800 Salix brachista HOM05D003877 ORTHO05D004647 3.5e-169 599.0 528 58.3
AUR62022935 Chenopodium quinoa HOM05D003877 ORTHO05D004647 7.8e-169 597.8 490 60.6
CSS0004354 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.3e-168 597.0 453 64.2
Migut.F00639 Erythranthe guttata HOM05D003877 ORTHO05D004647 1.3e-168 597.0 509 58.9
MSTRG.8927 Avicennia marina HOM05D003877 ORTHO05D004647 3.9e-168 595.5 505 59.2
BcaC07g41857 Brassica carinata HOM05D003877 ORTHO05D004647 3.9e-168 595.5 465 60.4
C08p49240 Brassica napus HOM05D003877 ORTHO05D004647 3.9e-168 595.5 465 60.4
BolC8t52459H Brassica oleracea HOM05D003877 ORTHO05D004647 3.9e-168 595.5 465 60.4
ECA233G0637 Erigeron canadensis HOM05D003877 ORTHO05D004647 3.9e-168 595.5 468 61.5
Sed0008918 Sechium edule HOM05D003877 ORTHO05D004647 3.9e-168 595.5 511 58.5
BraA09t41875Z Brassica rapa HOM05D003877 ORTHO05D004647 6.6e-168 594.7 459 61.2
A09p65300 Brassica napus HOM05D003877 ORTHO05D004647 1.1e-167 594.0 459 61.2
EL10Ac2g04887 Beta vulgaris HOM05D003877 ORTHO05D004647 1.5e-167 593.6 475 61.7
Nitab4.5_0005049g0030 Nicotiana tabacum HOM05D003877 ORTHO05D004647 1.9e-167 593.2 513 57.9
PSO349G0168 Papaver somniferum HOM05D003877 ORTHO05D004647 1.9e-167 593.2 463 61.8
A06p06580 Brassica napus HOM05D003877 ORTHO05D004647 2.5e-167 592.8 497 59.2
Aa31LG1G5020 Aethionema arabicum HOM05D003877 ORTHO05D004647 9.5e-167 590.9 492 60.0
Oeu056656.1 Olea europaea HOM05D003877 ORTHO05D004647 1.2e-166 590.5 490 59.4
ATR0681G014 Amborella trichopoda HOM05D003877 ORTHO05D004647 2.1e-166 589.7 432 66.9
BolC5t29551H Brassica oleracea HOM05D003877 ORTHO05D004647 2.1e-166 589.7 497 58.4
Nitab4.5_0000058g0130 Nicotiana tabacum HOM05D003877 ORTHO05D004647 2.1e-166 589.7 539 55.5
SGA_v2.0_scaffold2G01375 Striga asiatica HOM05D003877 ORTHO05D004647 4.7e-166 588.6 473 60.9
C05p07990 Brassica napus HOM05D003877 ORTHO05D004647 1.8e-165 586.6 497 58.4
vmacro10004 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 5.2e-165 585.1 589 51.4
BcaC05g24837 Brassica carinata HOM05D003877 ORTHO05D004647 1.2e-164 583.9 470 60.2
Dinv21772 Davidia involucrata HOM05D003877 ORTHO05D004647 3.4e-164 582.4 434 65.4
Ah.10g036260 Amaranthus hybridus HOM05D003877 ORTHO05D004647 9.2e-162 574.3 586 51.9
MELO3C018375.2 Cucumis melo HOM05D003877 ORTHO05D004647 2.1e-161 573.2 471 59.9
CsaV3_5G010390 Cucumis sativus L. HOM05D003877 ORTHO05D004647 2.7e-161 572.8 463 60.0
SGA_v2.0_scaffold60G20966 Striga asiatica HOM05D003877 ORTHO05D004647 7.8e-161 571.2 512 56.6
SGA_v2.0_scaffold85G26692 Striga asiatica HOM05D003877 ORTHO05D004647 1.9e-159 566.6 495 57.4
vmacro17691 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 1.9e-159 566.6 527 56.0
Sabra08G0053900 Salix brachista HOM05D003877 ORTHO05D004647 7.3e-159 564.7 410 65.1
Sed0009338 Sechium edule HOM05D003877 ORTHO05D004647 1.1e-157 560.8 477 59.1
ClCG07G004500 Citrullus lanatus HOM05D003877 ORTHO05D004647 2.4e-157 559.7 469 59.7
PGSC0003DMG400027120 Solanum tuberosum HOM05D003877 ORTHO05D004647 2.4e-157 559.7 431 63.6
Psat5g130920 Pisum sativum HOM05D003877 ORTHO05D004647 6.9e-157 558.1 496 56.5
CSS0043221 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 9.9e-156 554.3 418 62.7
Lsat_1_v5_gn_9_60880 Lactuca sativa HOM05D003877 ORTHO05D004647 9.3e-154 547.7 449 58.4
Thhalv10002208m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 5.1e-152 542.0 421 61.8
CSS0044757 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.1e-151 540.8 391 64.7
MELO3C034227.2 Cucumis melo HOM05D003877 ORTHO05D004647 2.4e-149 533.1 523 54.1
Prupe.6G130900 Prunus persica HOM05D003877 ORTHO05D004647 6.9e-149 531.6 498 56.0
SalBow3G1521 Salvia bowleyana HOM05D003877 ORTHO05D004647 1.5e-148 530.4 624 46.0
CsaV3_5G010430 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.3e-147 527.3 474 56.5
Atru.chr12.96 Acer truncatum HOM05D003877 ORTHO05D004647 1.3e-142 510.8 420 61.4
CsaV3_5G010400 Cucumis sativus L. HOM05D003877 ORTHO05D004647 8.4e-139 498.0 495 52.5
Mapoly0029s0098 Marchantia polymorpha HOM05D003877 ORTHO05D004647 2.5e-130 469.9 473 48.6
unitig_16.g32857 Utricularia gibba HOM05D003877 ORTHO05D004647 3.2e-130 469.5 522 47.9
Pp3c24_6790 Physcomitrium patens HOM05D003877 ORTHO05D004647 4.1e-125 452.6 469 49.7
SMO271G0017 Selaginella moellendorffii HOM05D003877 ORTHO05D004647 1.2e-124 451.1 471 50.5
CSS0003433 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 2.3e-120 436.8 377 58.1
Pp3c8_15050 Physcomitrium patens HOM05D003877 ORTHO05D004647 3.3e-119 433.0 423 50.8
Solyc05g052480.4 Solanum lycopersicum HOM05D003877 ORTHO05D004647 1.5e-116 424.1 333 63.1
HPP92_019712 Vanilla planifolia HOM05D003877 ORTHO05D004647 2.0e-116 423.7 337 62.3
AagrBONN_evm.TU.Sc2ySwM_344.2788 Anthoceros agrestis HOM05D003877 ORTHO05D004647 3.6e-113 412.9 519 43.4
SalBow3G0419 Salvia bowleyana HOM05D003877 ORTHO05D004647 1.6e-92 344.4 275 62.2
unitig_8.g4098 Utricularia gibba HOM05D003877 ORTHO05D004647 1.0e-75 288.5 331 45.9
SalBow3G3178 Salvia bowleyana HOM05D003877 ORTHO05D004647 9.5e-66 255.4 196 59.2
CsaV3_2G012250 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.3e-59 235.0 227 52.4
SEGI_29662 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 7.6e-47 192.6 159 59.7
SGA_v2.0_scaffold85G26702 Striga asiatica HOM05D003877 ORTHO05D004647 3.8e-46 190.3 216 48.1
CBR_g38028 Chara braunii HOM05D003877 ORTHO05D004647 3.1e-40 170.6 317 32.8
Cre13.g568600 Chlamydomonas reinhardtii HOM05D003877 ORTHO05D004647 2.0e-39 167.9 640 26.4
Manes.09G077219 Manihot esculenta HOM05D003877 ORTHO05D004647 2.1e-36 157.9 100 73.0
TPR.G10202 Trifolium pratense HOM05D003877 ORTHO05D004647 8.1e-33 146.0 121 57.0
TAR626G1532 Trochodendron aralioides HOM05D003877 ORTHO05D004647 9.0e-32 142.5 150 51.3
Lsat_1_v5_gn_5_175980 Lactuca sativa HOM05D003877 ORTHO05D004647 2.1e-28 131.3 105 58.1
SEGI_27537 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 1.0e-27 129.0 80 70.0
Manes.18G042850 Manihot esculenta HOM05D003877 ORTHO05D004647 1.3e-27 128.6 108 62.0
Manes.06G044901 Manihot esculenta HOM05D003877 ORTHO05D004647 5.1e-27 126.7 108 61.1
CsaV3_2G012240 Cucumis sativus L. HOM05D003877 ORTHO05D004647 9.6e-26 122.5 86 64.0
unitig_8.g4097 Utricularia gibba HOM05D003877 ORTHO05D004647 7.6e-23 112.8 103 54.4
Nn5g28638 Nelumbo nucifera HOM05D003877 ORTHO05D004647 2.1e-20 104.8 80 62.5
TPR.G5082 Trifolium pratense HOM05D003877 ORTHO05D004647 5.1e-19 100.1 73 58.9
Nn7g36267 Nelumbo nucifera HOM05D003877 ORTHO05D004647 1.4e-16 92.0 71 63.4
CSS0015783 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 5.8e-15 86.7 110 48.2
Carub.0003s0920 Capsella rubella HOM05D000468 ORTHO05D114682 2.7e-12 77.8 67 59.7
ATR0681G284 Amborella trichopoda HOM05D003877 ORTHO05D038325 3.0e-11 74.3 86 41.9
Manes.15G188901 Manihot esculenta HOM05D003877 ORTHO05D004647 7.4e-10 69.7 47 66.0
SEGI_18884 Sequoiadendron giganteum HOM05D003877 ORTHO05D038325 3.7e-09 67.4 60 48.3
MELO3C018376.2 Cucumis melo HOM05D003877 ORTHO05D004647 1.4e-08 65.5 45 62.2


User provided reference genes

Program Settings