Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G0988 Ceratophyllum demersum HOM05D004476 ORTHO05D002200 2.5e-50 201.8 105 100.0
GSVIVG01029250001 Vitis vinifera HOM05D004476 ORTHO05D002200 5.9e-31 137.5 79 79.7
TAR383G0891 Trochodendron aralioides HOM05D004476 ORTHO05D002200 1.3e-30 136.3 79 82.3
CiPaw.08G030800 Carya illinoinensis HOM05D004476 ORTHO05D002200 3.8e-30 134.8 79 79.7
Haze_22059 Corylus avellana HOM05D004476 ORTHO05D002200 8.5e-30 133.7 79 79.7
Cfa013479 Carpinus fangiana HOM05D004476 ORTHO05D002200 1.1e-29 133.3 79 79.7
Cc06_g12980 Coffea canephora HOM05D004476 ORTHO05D002200 1.5e-29 132.9 79 78.5
CiPaw.07G199800 Carya illinoinensis HOM05D004476 ORTHO05D002200 1.9e-29 132.5 79 78.5
COL.COLO4_23446 Corchorus olitorius HOM05D004476 ORTHO05D002200 1.9e-29 132.5 79 79.7
Eucgr.F03859 Eucalyptus grandis HOM05D004476 ORTHO05D002200 1.9e-29 132.5 79 79.7
Manes.04G036000 Manihot esculenta HOM05D004476 ORTHO05D002200 1.9e-29 132.5 79 78.5
PSO063G1528 Papaver somniferum HOM05D004476 ORTHO05D002200 1.9e-29 132.5 79 78.5
BolC7t46198H Brassica oleracea HOM05D004476 ORTHO05D002200 2.5e-29 132.1 101 66.3
PSO170G5845 Papaver somniferum HOM05D004476 ORTHO05D002200 2.5e-29 132.1 79 77.2
Rhsim01G0068600 Rhododendron simsii HOM05D004476 ORTHO05D002200 3.2e-29 131.7 79 77.2
Aqoxy7G02925 Aquilegia oxysepala HOM05D004476 ORTHO05D002200 4.2e-29 131.3 79 75.9
MSTRG.19721 Avicennia marina HOM05D004476 ORTHO05D002200 4.2e-29 131.3 79 74.7
Manes.11G129400 Manihot esculenta HOM05D004476 ORTHO05D002200 4.2e-29 131.3 79 78.5
Atru.chr7.991 Acer truncatum HOM05D004476 ORTHO05D002200 5.5e-29 131.0 79 77.2
MSTRG.6242 Avicennia marina HOM05D004476 ORTHO05D002200 5.5e-29 131.0 79 78.5
CANSAT01G2105 Cannabis sativa HOM05D004476 ORTHO05D002200 7.2e-29 130.6 79 79.7
CSS0026677 Camellia sinensis var. sinensis HOM05D004476 ORTHO05D002200 9.4e-29 130.2 79 79.7
Ciclev10009996m.g Citrus clementina HOM05D004476 ORTHO05D002200 9.4e-29 130.2 79 75.9
EL10Ac8g19281 Beta vulgaris HOM05D004476 ORTHO05D002200 1.2e-28 129.8 79 73.4
Oeu032540.1 Olea europaea HOM05D004476 ORTHO05D002200 1.2e-28 129.8 79 74.7
unitig_0.g577 Utricularia gibba HOM05D004476 ORTHO05D002200 2.1e-28 129.0 79 73.4
vmacro20569 Vaccinium macrocarpon HOM05D004476 ORTHO05D002200 2.1e-28 129.0 79 74.7
Cpa.g.sc115.54 Carica papaya HOM05D004476 ORTHO05D002200 2.7e-28 128.6 79 75.9
QL11p005289 Quercus lobata HOM05D004476 ORTHO05D002200 2.7e-28 128.6 79 75.9
Duzib170G0172 Durio zibethinus HOM05D004476 ORTHO05D002200 3.6e-28 128.3 79 74.7
Migut.J01504 Erythranthe guttata HOM05D004476 ORTHO05D002200 3.6e-28 128.3 79 77.2
Thecc.09G188500 Theobroma cacao HOM05D004476 ORTHO05D002200 3.6e-28 128.3 79 75.9
Lalb_Chr11g0074651 Lupinus albus HOM05D004476 ORTHO05D002200 4.7e-28 127.9 79 75.9
AL7G22400 Arabidopsis lyrata HOM05D004476 ORTHO05D002200 6.1e-28 127.5 79 75.9
AT4G29850 Arabidopsis thaliana HOM05D004476 ORTHO05D002200 6.1e-28 127.5 79 75.9
AUR62031259 Chenopodium quinoa HOM05D004476 ORTHO05D002200 6.1e-28 127.5 79 73.4
Ah.14g086030 Amaranthus hybridus HOM05D004476 ORTHO05D002200 8.0e-28 127.1 79 75.9
unitig_60.g25493 Utricularia gibba HOM05D004476 ORTHO05D002200 8.0e-28 127.1 79 73.4
ClCG06G013730 Citrullus lanatus HOM05D004476 ORTHO05D002200 1.0e-27 126.7 79 73.4
Gohir.D08G090800 Gossypium hirsutum HOM05D004476 ORTHO05D002200 1.0e-27 126.7 79 73.4
Gorai.004G096100 Gossypium raimondii HOM05D004476 ORTHO05D002200 1.0e-27 126.7 79 73.4
Potri.006G072000 Populus trichocarpa HOM05D004476 ORTHO05D002200 1.0e-27 126.7 79 77.2
Sed0005515 Sechium edule HOM05D004476 ORTHO05D002200 1.0e-27 126.7 79 73.4
THA.LOC104813499 Tarenaya hassleriana HOM05D004476 ORTHO05D002200 1.4e-27 126.3 79 74.7
MELO3C017417.2 Cucumis melo HOM05D004476 ORTHO05D002200 1.8e-27 125.9 79 72.2
Thhalv10026650m.g Eutrema salsugineum HOM05D004476 ORTHO05D002200 1.8e-27 125.9 79 74.7
MD16G1242800 Malus domestica HOM05D004476 ORTHO05D002200 1.8e-27 125.9 79 74.7
Oeu025695.1 Olea europaea HOM05D004476 ORTHO05D002200 1.8e-27 125.9 79 74.7
RcHm_v2.0_Chr4g0398651 Rosa chinensis HOM05D004476 ORTHO05D002200 1.8e-27 125.9 78 76.9
SGA_v2.0_scaffold69G23243 Striga asiatica HOM05D004476 ORTHO05D002200 1.8e-27 125.9 79 77.2
Carub.0004s1478 Capsella rubella HOM05D004476 ORTHO05D002200 2.3e-27 125.6 79 73.4
TWI34G1740 Tripterygium wilfordii HOM05D004476 ORTHO05D002200 2.3e-27 125.6 79 75.9
FvH4_4g06710 Fragaria vesca HOM05D004476 ORTHO05D002200 3.0e-27 125.2 78 75.6
FAN07G1794 Fragaria x ananassa HOM05D004476 ORTHO05D002200 3.0e-27 125.2 78 75.6
FAN12G3358 Fragaria x ananassa HOM05D004476 ORTHO05D002200 3.0e-27 125.2 78 75.6
FAN22G1515 Fragaria x ananassa HOM05D004476 ORTHO05D002200 3.0e-27 125.2 78 75.6
MD13G1237400 Malus domestica HOM05D004476 ORTHO05D002200 3.0e-27 125.2 79 74.7
Oeu025208.1 Olea europaea HOM05D004476 ORTHO05D002200 3.0e-27 125.2 79 74.7
ATR0580G349 Amborella trichopoda HOM05D004476 ORTHO05D002200 4.0e-27 124.8 79 79.7
MSTRG.10746 Avicennia marina HOM05D004476 ORTHO05D002200 4.0e-27 124.8 79 72.2
FAN17G0770 Fragaria x ananassa HOM05D004476 ORTHO05D002200 4.0e-27 124.8 78 74.4
Gohir.A08G080700 Gossypium hirsutum HOM05D004476 ORTHO05D002200 4.0e-27 124.8 79 72.2
CsaV3_1G031980 Cucumis sativus L. HOM05D004476 ORTHO05D002200 5.2e-27 124.4 79 70.9
Sp7g27660 Schrenkiella parvula HOM05D004476 ORTHO05D002200 5.2e-27 124.4 79 73.4
Sc14g0003140 Simmondsia chinensis HOM05D004476 ORTHO05D002200 5.2e-27 124.4 79 70.9
CARHR237750 Cardamine hirsuta HOM05D004476 ORTHO05D002200 6.7e-27 124.0 79 73.4
Ca_21269_v3 Cicer arietinum L. HOM05D004476 ORTHO05D002200 6.7e-27 124.0 77 75.3
SGA_v2.0_scaffold66G22434 Striga asiatica HOM05D004476 ORTHO05D002200 6.7e-27 124.0 79 75.9
Sabra18G0113200 Salix brachista HOM05D004476 ORTHO05D002200 8.8e-27 123.6 78 75.6
A03p59280 Brassica napus HOM05D004476 ORTHO05D002200 1.1e-26 123.2 79 73.4
C07p57290 Brassica napus HOM05D004476 ORTHO05D002200 1.1e-26 123.2 79 73.4
BraA03t14985Z Brassica rapa HOM05D004476 ORTHO05D002200 1.1e-26 123.2 79 73.4
Potri.018G133500 Populus trichocarpa HOM05D004476 ORTHO05D002200 1.1e-26 123.2 79 73.4
PGR142G0686 Punica granatum HOM05D004476 ORTHO05D002200 1.1e-26 123.2 79 73.4
Gohir.A05G345854 Gossypium hirsutum HOM05D004476 ORTHO05D002200 1.5e-26 122.9 77 72.7
Gohir.D04G085200 Gossypium hirsutum HOM05D004476 ORTHO05D002200 1.5e-26 122.9 77 72.7
Gorai.012G095200 Gossypium raimondii HOM05D004476 ORTHO05D002200 1.5e-26 122.9 77 72.7
Medtr2g038550 Medicago truncatula HOM05D004476 ORTHO05D002200 1.5e-26 122.9 79 73.4
Medtr4g126790 Medicago truncatula HOM05D004476 ORTHO05D002200 1.5e-26 122.9 77 74.0
Prupe.1G069900 Prunus persica HOM05D004476 ORTHO05D002200 1.5e-26 122.9 79 74.7
TPR.G31650 Trifolium pratense HOM05D004476 ORTHO05D002200 1.5e-26 122.9 77 74.0
Aa31LG2G20690 Aethionema arabicum HOM05D004476 ORTHO05D002200 2.0e-26 122.5 79 70.9
AT2G19350 Arabidopsis thaliana HOM05D004476 ORTHO05D002200 2.0e-26 122.5 79 73.4
BcaNung00496 Brassica carinata HOM05D004476 ORTHO05D002200 2.0e-26 122.5 79 73.4
SGA_v2.0_scaffold17G07943 Striga asiatica HOM05D004476 ORTHO05D002200 2.0e-26 122.5 78 73.1
Ca_02141_v3 Cicer arietinum L. HOM05D004476 ORTHO05D002200 2.6e-26 122.1 79 73.4
THA.LOC104803963 Tarenaya hassleriana HOM05D004476 ORTHO05D002200 2.6e-26 122.1 79 72.2
HPP92_021983 Vanilla planifolia HOM05D004476 ORTHO05D002200 2.6e-26 122.1 79 72.2
Thhalv10022925m.g Eutrema salsugineum HOM05D004476 ORTHO05D002200 3.3e-26 121.7 79 73.4
PGSC0003DMG400018747 Solanum tuberosum HOM05D004476 ORTHO05D002200 3.3e-26 121.7 79 77.2
Sopen07g003040 Solanum pennellii HOM05D004476 ORTHO05D002200 4.4e-26 121.3 79 75.9
TPR.G32576 Trifolium pratense HOM05D004476 ORTHO05D002200 4.4e-26 121.3 79 73.4
AL3G48970 Arabidopsis lyrata HOM05D004476 ORTHO05D002200 7.5e-26 120.6 79 72.2
CARHR109800 Cardamine hirsuta HOM05D004476 ORTHO05D002200 7.5e-26 120.6 79 72.2
Lj6g0012515 Lotus japonicus HOM05D004476 ORTHO05D002200 7.5e-26 120.6 79 75.9
Nitab4.5_0000957g0040 Nicotiana tabacum HOM05D004476 ORTHO05D002200 7.5e-26 120.6 79 75.9
Sp3g32720 Schrenkiella parvula HOM05D004476 ORTHO05D002200 7.5e-26 120.6 79 72.2
arahy.Tifrunner.gnm1.ann1.BX0J8Q Arachis hypogaea HOM05D004476 ORTHO05D002200 9.7e-26 120.2 77 72.7
arahy.Tifrunner.gnm1.ann1.FSCD1Z Arachis hypogaea HOM05D004476 ORTHO05D002200 9.7e-26 120.2 77 72.7
Carub.0003s3357 Capsella rubella HOM05D004476 ORTHO05D002200 9.7e-26 120.2 79 69.6
C01p09350 Brassica napus HOM05D004476 ORTHO05D002200 1.3e-25 119.8 79 72.2
BolC1t00923H Brassica oleracea HOM05D004476 ORTHO05D002200 1.3e-25 119.8 79 72.2
Psat1g142560 Pisum sativum HOM05D004476 ORTHO05D002200 1.3e-25 119.8 79 72.2
Sed0012081 Sechium edule HOM05D004476 ORTHO05D002200 1.3e-25 119.8 79 68.4
HanXRQChr05g0142171 Helianthus annuus HOM05D004476 ORTHO05D002200 1.7e-25 119.4 81 71.6
Nitab4.5_0010128g0020 Nicotiana tabacum HOM05D004476 ORTHO05D002200 1.7e-25 119.4 79 74.7
BcaB03g16723 Brassica carinata HOM05D004476 ORTHO05D002200 2.2e-25 119.0 79 72.2
BcaC06g36566 Brassica carinata HOM05D004476 ORTHO05D002200 2.2e-25 119.0 79 72.2
BolC7t40682H Brassica oleracea HOM05D004476 ORTHO05D002200 2.2e-25 119.0 79 72.2
BraA07t27934Z Brassica rapa HOM05D004476 ORTHO05D002200 2.2e-25 119.0 79 72.2
Psat4g013880 Pisum sativum HOM05D004476 ORTHO05D002200 2.2e-25 119.0 77 71.4
A01p08310 Brassica napus HOM05D004476 ORTHO05D002200 3.7e-25 118.2 79 70.9
Duzib168G2374 Durio zibethinus HOM05D004476 ORTHO05D002200 3.7e-25 118.2 79 68.4
Lsat_1_v5_gn_8_68841 Lactuca sativa HOM05D004476 ORTHO05D002200 3.7e-25 118.2 81 69.1
Glyma.09G062200 Glycine max HOM05D004476 ORTHO05D002200 4.8e-25 117.9 77 75.3
SalBow1G0556 Salvia bowleyana HOM05D004476 ORTHO05D002200 6.3e-25 117.5 79 67.1
Glyma.15G168600 Glycine max HOM05D004476 ORTHO05D002200 8.2e-25 117.1 77 72.7
Hma1.2p1_0571F.1_g180790 Hydrangea macrophylla HOM05D004476 ORTHO05D002200 8.2e-25 117.1 80 73.8
DCAR_014680 Daucus carota HOM05D004476 ORTHO05D002200 1.4e-24 116.3 80 71.2
Peaxi162Scf01558g00013 Petunia axillaris HOM05D004476 ORTHO05D002200 1.4e-24 116.3 80 72.5
VMungo1309G0306 Vigna mungo HOM05D004476 ORTHO05D002200 1.4e-24 116.3 76 71.1
BraA01t00779Z Brassica rapa HOM05D004476 ORTHO05D002200 1.8e-24 115.9 79 69.6
Glyma.13G102400 Glycine max HOM05D004476 ORTHO05D002200 2.4e-24 115.5 77 68.8
Glyma.17G056600 Glycine max HOM05D004476 ORTHO05D002200 2.4e-24 115.5 77 70.1
THA.LOC104817767 Tarenaya hassleriana HOM05D004476 ORTHO05D002200 2.4e-24 115.5 79 69.6
BcaC04g22858 Brassica carinata HOM05D004476 ORTHO05D002200 3.1e-24 115.2 79 67.1
A09p12330 Brassica napus HOM05D004476 ORTHO05D002200 3.1e-24 115.2 79 67.1
C09p14540 Brassica napus HOM05D004476 ORTHO05D002200 3.1e-24 115.2 79 67.1
BraA09t36877Z Brassica rapa HOM05D004476 ORTHO05D002200 3.1e-24 115.2 79 67.1
Phvul.009G233600 Phaseolus vulgaris HOM05D004476 ORTHO05D002200 7.0e-24 114.0 76 71.1
BcaB07g31613 Brassica carinata HOM05D004476 ORTHO05D002200 1.2e-23 113.2 79 65.8
CAN.G1495.9 Capsicum annuum HOM05D004476 ORTHO05D002200 2.7e-23 112.1 80 71.2
DCAR_017994 Daucus carota HOM05D004476 ORTHO05D002200 3.8e-22 108.2 81 66.7
Phvul.003G157700 Phaseolus vulgaris HOM05D004476 ORTHO05D002200 1.1e-21 106.7 77 66.2
HPP92_010317 Vanilla planifolia HOM05D004476 ORTHO05D002200 3.2e-21 105.1 63 79.4
Lj2g0010276 Lotus japonicus HOM05D004476 ORTHO05D002200 7.2e-21 104.0 77 62.3
Hma1.2p1_1219F.1_g267870 Hydrangea macrophylla HOM05D004476 ORTHO05D002200 9.4e-21 103.6 79 65.8
Lj2g0014857 Lotus japonicus HOM05D004476 ORTHO05D002200 9.4e-21 103.6 77 63.6
BolC9t54358H Brassica oleracea HOM05D004476 ORTHO05D002200 1.6e-20 102.8 85 62.4
Hund06695 Selenicereus undatus HOM05D004476 ORTHO05D002200 2.1e-20 102.4 63 74.6
AUR62027442 Chenopodium quinoa HOM05D004476 ORTHO05D002200 6.1e-20 100.9 63 73.0
Lj4g0004777 Lotus japonicus HOM05D004476 ORTHO05D002200 6.1e-20 100.9 77 62.3
Mapoly0038s0099 Marchantia polymorpha HOM05D004476 ORTHO05D002200 1.0e-19 100.1 79 59.5
Pp3c12_21250 Physcomitrium patens HOM05D004476 ORTHO05D002200 3.0e-19 98.6 79 60.8
RcHm_v2.0_Chr4g0391941 Rosa chinensis HOM05D004476 ORTHO05D002200 8.8e-19 97.1 73 65.8
Os02g0176400 Oryza sativa ssp. japonica HOM05D004476 ORTHO05D002200 1.2e-18 96.7 79 60.8
Zm00001eb389280 Zea mays HOM05D004476 ORTHO05D002200 1.2e-18 96.7 79 59.5
Zm00001eb206870 Zea mays HOM05D004476 ORTHO05D002200 4.4e-18 94.7 79 59.5
C07p02850 Brassica napus HOM05D004476 ORTHO05D002200 1.3e-17 93.2 63 69.8
SMO348G0029 Selaginella moellendorffii HOM05D004476 ORTHO05D002200 6.3e-17 90.9 79 50.6
Eucgr.F03858 Eucalyptus grandis HOM05D004476 ORTHO05D002200 8.3e-17 90.5 64 70.3
Nn8g40538 Nelumbo nucifera HOM05D004476 ORTHO05D002200 1.4e-16 89.7 79 62.0
RcHm_v2.0_Chr2g0106271 Rosa chinensis HOM05D004476 ORTHO05D002200 5.0e-14 81.3 63 63.5
A07p01390 Brassica napus HOM05D004476 ORTHO05D002200 1.9e-13 79.3 56 67.9
RcHm_v2.0_Chr3g0494811 Rosa chinensis HOM05D004476 ORTHO05D002200 5.5e-13 77.8 63 58.7
SMO347G0074 Selaginella moellendorffii HOM05D004476 ORTHO05D002200 9.5e-13 77.0 78 48.7
Haze_24699 Corylus avellana HOM05D004476 ORTHO05D002200 2.1e-12 75.9 45 77.8
CBR_g46719 Chara braunii HOM05D004476 ORTHO05D002200 1.0e-11 73.6 62 54.8
ECA236G3194 Erigeron canadensis HOM05D000593 ORTHO05D000562 3.0e-11 72.0 55 61.8
RcHm_v2.0_Chr6g0255091 Rosa chinensis HOM05D004476 ORTHO05D002200 2.8e-09 65.5 63 55.6
CDE02G2186 Ceratophyllum demersum HOM05D004476 ORTHO05D002200 8.3e-09 63.9 104 44.2
Zm00001eb233560 Zea mays HOM05D053802 ORTHO05D002200 9.2e-08 60.5 63 49.2
Nitab4.5_0005445g0030 Nicotiana tabacum HOM05D004476 ORTHO05D002200 1.7e-06 56.2 45 60.0


User provided reference genes

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