Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G0921 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 4.9e-154 547.7 270 100.0
CDE02G3000 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 1.1e-124 450.3 245 92.2
MBI19_g09317_MAGBIO Magnolia biondii HOM05D004453 ORTHO05D005375 5.1e-79 298.5 248 62.1
TAR623G1190 Trochodendron aralioides HOM05D004453 ORTHO05D005375 3.4e-75 285.8 229 64.6
Nn7g35809 Nelumbo nucifera HOM05D004453 ORTHO05D005375 7.7e-75 284.6 236 62.3
ATR0068G064 Amborella trichopoda HOM05D004453 ORTHO05D005375 8.5e-74 281.2 236 59.7
Aqoxy1G00087 Aquilegia oxysepala HOM05D004453 ORTHO05D005375 4.2e-73 278.9 229 63.3
Nn2g15897 Nelumbo nucifera HOM05D004453 ORTHO05D005375 7.9e-72 274.6 246 59.8
QL01p007925 Quercus lobata HOM05D004453 ORTHO05D005375 2.0e-70 270.0 260 54.6
Dinv03791 Davidia involucrata HOM05D004453 ORTHO05D005375 4.8e-69 265.4 235 58.7
Cfa009532 Carpinus fangiana HOM05D004453 ORTHO05D005375 6.3e-69 265.0 235 60.4
Cc01_g00270 Coffea canephora HOM05D004453 ORTHO05D005375 6.3e-69 265.0 237 57.8
TWI34G0101 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 8.2e-69 264.6 247 56.3
Eucgr.J01746 Eucalyptus grandis HOM05D004453 ORTHO05D005375 1.1e-68 264.2 237 59.1
GSVIVG01025506001 Vitis vinifera HOM05D004453 ORTHO05D005375 1.4e-68 263.8 236 60.2
PSO384G0395 Papaver somniferum HOM05D004453 ORTHO05D005375 3.1e-68 262.7 236 58.5
TWI60G0130 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 3.1e-68 262.7 235 58.3
PSO339G2035 Papaver somniferum HOM05D004453 ORTHO05D005375 7.0e-68 261.5 236 58.1
Rhsim01G0183700 Rhododendron simsii HOM05D004453 ORTHO05D005375 7.0e-68 261.5 250 56.4
TAR369G0719 Trochodendron aralioides HOM05D004453 ORTHO05D005375 2.6e-67 259.6 230 60.0
Dinv13490 Davidia involucrata HOM05D004453 ORTHO05D005375 7.7e-67 258.1 250 56.0
PGR119G0742 Punica granatum HOM05D004453 ORTHO05D005375 1.0e-66 257.7 235 57.4
CsaV3_4G017680 Cucumis sativus L. HOM05D004453 ORTHO05D005375 1.3e-66 257.3 224 60.7
Prupe.6G001400 Prunus persica HOM05D004453 ORTHO05D005375 1.7e-66 256.9 221 59.3
Cpa.g.sc119.21 Carica papaya HOM05D004453 ORTHO05D005375 5.0e-66 255.4 199 65.3
Manes.17G052200 Manihot esculenta HOM05D004453 ORTHO05D005375 6.5e-66 255.0 220 59.1
Manes.16G034900 Manihot esculenta HOM05D004453 ORTHO05D005375 1.5e-65 253.8 230 57.8
Oeu023964.1 Olea europaea HOM05D004453 ORTHO05D005375 5.5e-65 251.9 224 58.0
ClCG02G024480 Citrullus lanatus HOM05D004453 ORTHO05D005375 7.2e-65 251.5 205 62.0
DCAR_023824 Daucus carota HOM05D004453 ORTHO05D005375 1.6e-64 250.4 187 66.8
AUR62042621 Chenopodium quinoa HOM05D004453 ORTHO05D005375 2.1e-64 250.0 239 54.8
MELO3C031044.2 Cucumis melo HOM05D004453 ORTHO05D005375 2.1e-64 250.0 204 61.8
Ciclev10016282m.g Citrus clementina HOM05D004453 ORTHO05D005375 4.7e-64 248.8 232 58.6
Sed0012812 Sechium edule HOM05D004453 ORTHO05D005375 6.1e-64 248.4 220 59.1
Atru.chr4.902 Acer truncatum HOM05D004453 ORTHO05D005375 1.4e-63 247.3 223 59.2
Thhalv10011735m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 2.3e-63 246.5 220 55.9
PGR102G2973 Punica granatum HOM05D004453 ORTHO05D005375 3.0e-63 246.1 235 55.7
HPP92_026813 Vanilla planifolia HOM05D004453 ORTHO05D005375 4.0e-63 245.7 232 56.5
AUR62040892 Chenopodium quinoa HOM05D001653 ORTHO05D001751 5.2e-63 245.4 229 55.5
MD11G1001200 Malus domestica HOM05D004453 ORTHO05D005375 5.2e-63 245.4 246 54.9
AL1G63560 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 1.1e-62 244.2 219 55.3
Carub.0001s4404 Capsella rubella HOM05D004453 ORTHO05D005375 1.1e-62 244.2 235 53.2
vmacro12597 Vaccinium macrocarpon HOM05D004453 ORTHO05D005375 1.1e-62 244.2 199 63.8
HPP92_000788 Vanilla planifolia HOM05D004453 ORTHO05D005375 1.1e-62 244.2 224 57.1
Actinidia16228 Actinidia chinensis HOM05D004453 ORTHO05D005375 1.5e-62 243.8 224 55.4
MD03G1001500 Malus domestica HOM05D004453 ORTHO05D005375 1.5e-62 243.8 248 55.6
Os07g0223700 Oryza sativa ssp. japonica HOM05D004453 ORTHO05D005375 1.5e-62 243.8 225 60.4
Solyc01g050070.4 Solanum lycopersicum HOM05D004453 ORTHO05D005375 1.5e-62 243.8 203 62.1
AT1G55535 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 2.0e-62 243.4 220 54.5
CSS0040072 Camellia sinensis var. sinensis HOM05D004453 ORTHO05D005375 2.0e-62 243.4 221 57.9
Lalb_Chr16g0385441 Lupinus albus HOM05D004453 ORTHO05D005375 2.0e-62 243.4 237 54.9
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 3.3e-62 242.7 186 64.5
BcaC08g44204 Brassica carinata HOM05D004453 ORTHO05D005375 5.7e-62 241.9 220 54.5
BolC6t36812H Brassica oleracea HOM05D004453 ORTHO05D005375 5.7e-62 241.9 220 54.5
Eucgr.B03584 Eucalyptus grandis HOM05D004453 ORTHO05D005375 7.4e-62 241.5 193 61.7
Sopen01g019490 Solanum pennellii HOM05D004453 ORTHO05D005375 7.4e-62 241.5 202 61.9
THA.LOC104815673 Tarenaya hassleriana HOM05D004453 ORTHO05D005375 7.4e-62 241.5 222 55.0
FAN25G0403 Fragaria x ananassa HOM05D004453 ORTHO05D005375 9.7e-62 241.1 231 55.8
Sp1g41150 Schrenkiella parvula HOM05D004453 ORTHO05D005375 2.2e-61 240.0 235 52.8
Zm00001eb303530 Zea mays HOM05D004453 ORTHO05D005375 2.2e-61 240.0 238 57.1
Ah.04g153920 Amaranthus hybridus HOM05D004453 ORTHO05D005375 2.8e-61 239.6 236 55.1
FAN16G2113 Fragaria x ananassa HOM05D004453 ORTHO05D005375 3.7e-61 239.2 228 56.1
FAN11G3564 Fragaria x ananassa HOM05D004453 ORTHO05D005375 4.8e-61 238.8 233 54.9
CARHR045220 Cardamine hirsuta HOM05D004453 ORTHO05D005375 6.3e-61 238.4 218 54.1
Psat7g133480 Pisum sativum HOM05D004453 ORTHO05D005375 6.3e-61 238.4 220 58.2
Hund01806 Selenicereus undatus HOM05D000185 ORTHO05D000105 6.3e-61 238.4 255 53.3
FvH4_3g45940 Fragaria vesca HOM05D004453 ORTHO05D005375 8.2e-61 238.0 228 56.1
FAN21G0323 Fragaria x ananassa HOM05D004453 ORTHO05D005375 8.2e-61 238.0 228 56.1
Medtr4g083300 Medicago truncatula HOM05D004453 ORTHO05D005375 8.2e-61 238.0 184 64.1
Peaxi162Scf00186g01212 Petunia axillaris HOM05D004453 ORTHO05D005375 8.2e-61 238.0 193 63.7
RcHm_v2.0_Chr5g0084051 Rosa chinensis HOM05D004453 ORTHO05D005375 8.2e-61 238.0 228 55.3
Lj4g0023466 Lotus japonicus HOM05D004453 ORTHO05D005375 2.4e-60 236.5 190 61.6
Glyma.20G024900 Glycine max HOM05D004453 ORTHO05D005375 7.0e-60 235.0 220 55.9
TPR.G34071 Trifolium pratense HOM05D004453 ORTHO05D005375 7.0e-60 235.0 184 64.1
A05p17380 Brassica napus HOM05D004453 ORTHO05D005375 1.2e-59 234.2 233 51.5
Ca_18793_v3 Cicer arietinum L. HOM05D004453 ORTHO05D005375 1.2e-59 234.2 221 57.5
Haze_22921 Corylus avellana HOM05D004453 ORTHO05D005375 1.2e-59 234.2 198 61.1
arahy.Tifrunner.gnm1.ann1.C35Y2E Arachis hypogaea HOM05D004453 ORTHO05D005375 1.6e-59 233.8 186 62.9
arahy.Tifrunner.gnm1.ann1.GHD6QC Arachis hypogaea HOM05D004453 ORTHO05D005375 1.6e-59 233.8 186 62.9
Sc13g0003960 Simmondsia chinensis HOM05D004453 ORTHO05D005375 1.6e-59 233.8 202 58.9
Thecc.09G205600 Theobroma cacao HOM05D004453 ORTHO05D005375 2.6e-59 233.0 202 61.4
C06p16140 Brassica napus HOM05D004453 ORTHO05D005375 7.7e-59 231.5 220 53.6
Duzib150G1073 Durio zibethinus HOM05D004453 ORTHO05D005375 7.7e-59 231.5 204 61.8
Sabra01G0001000 Salix brachista HOM05D004453 ORTHO05D005375 7.7e-59 231.5 244 51.6
BcaB02g10815 Brassica carinata HOM05D004453 ORTHO05D005375 3.8e-58 229.2 222 52.3
A08p00560 Brassica napus HOM05D004453 ORTHO05D005375 8.5e-58 228.0 223 54.3
COL.COLO4_35070 Corchorus olitorius HOM05D004453 ORTHO05D005375 1.5e-57 227.3 203 61.1
ECA238G2653 Erigeron canadensis HOM05D004453 ORTHO05D005375 1.5e-57 227.3 226 53.5
Gohir.D03G147000 Gossypium hirsutum HOM05D004453 ORTHO05D005375 1.5e-57 227.3 198 60.6
EL10Ac7g17533 Beta vulgaris HOM05D004453 ORTHO05D005375 3.2e-57 226.1 231 54.1
PSO675G3694 Papaver somniferum HOM05D004453 ORTHO05D005375 3.2e-57 226.1 199 58.3
BraA08t32115Z Brassica rapa HOM05D004453 ORTHO05D005375 4.2e-57 225.7 223 53.8
Gohir.A03G021700 Gossypium hirsutum HOM05D004453 ORTHO05D005375 4.2e-57 225.7 200 60.5
Gorai.003G154400 Gossypium raimondii HOM05D004453 ORTHO05D005375 4.2e-57 225.7 198 60.1
C03p92850 Brassica napus HOM05D004453 ORTHO05D005375 5.5e-57 225.3 225 53.8
BolC3t21591H Brassica oleracea HOM05D004453 ORTHO05D005375 5.5e-57 225.3 225 53.8
HanXRQChr14g0437111 Helianthus annuus HOM05D004453 ORTHO05D005375 5.5e-57 225.3 224 54.0
Potri.001G001400 Populus trichocarpa HOM05D004453 ORTHO05D005375 5.5e-57 225.3 185 62.7
Phvul.002G101400 Phaseolus vulgaris HOM05D004453 ORTHO05D005375 7.2e-57 224.9 220 54.1
Glyma.07G225000 Glycine max HOM05D004453 ORTHO05D005375 1.6e-56 223.8 220 54.1
Lalb_Chr05g0219881 Lupinus albus HOM05D004453 ORTHO05D005375 1.6e-56 223.8 185 61.1
PSO541G5087 Papaver somniferum HOM05D004453 ORTHO05D005375 1.6e-56 223.8 199 57.3
VMungo0251G3504 Vigna mungo HOM05D004453 ORTHO05D005375 2.7e-56 223.0 229 52.8
Migut.N00531 Erythranthe guttata HOM05D004453 ORTHO05D005375 3.6e-56 222.6 225 52.0
SEGI_24089 Sequoiadendron giganteum HOM05D004453 ORTHO05D005375 4.7e-56 222.2 218 53.2
BcaC01g01533 Brassica carinata HOM05D004453 ORTHO05D005375 6.1e-56 221.9 224 53.6
CiPaw.13G179200 Carya illinoinensis HOM05D004453 ORTHO05D005375 2.6e-54 216.5 196 57.7
SGA_v2.0_scaffold6G03329 Striga asiatica HOM05D004453 ORTHO05D005375 3.4e-54 216.1 187 59.9
Gohir.A08G014200 Gossypium hirsutum HOM05D004453 ORTHO05D005375 4.4e-54 215.7 237 51.5
ECA248G0105 Erigeron canadensis HOM05D004453 ORTHO05D005375 5.7e-54 215.3 188 61.2
Gohir.D08G020800 Gossypium hirsutum HOM05D004453 ORTHO05D005375 6.3e-53 211.8 208 54.8
Gorai.004G020100 Gossypium raimondii HOM05D004453 ORTHO05D005375 6.3e-53 211.8 208 54.8
Aa31LG10G710 Aethionema arabicum HOM05D004453 ORTHO05D005375 7.0e-52 208.4 236 49.2
Lsat_1_v5_gn_2_50660 Lactuca sativa HOM05D004453 ORTHO05D005375 5.9e-51 205.3 236 50.8
SGA_v2.0_scaffold3G01700 Striga asiatica HOM05D004453 ORTHO05D005375 1.0e-50 204.5 182 57.7
Lsat_1_v5_gn_1_71301 Lactuca sativa HOM05D004453 ORTHO05D005375 6.5e-50 201.8 206 56.8
MSTRG.18889 Avicennia marina HOM05D004453 ORTHO05D005375 8.5e-50 201.4 194 54.6
Aa31LG8G630 Aethionema arabicum HOM05D004453 ORTHO05D005375 1.2e-48 197.6 183 55.7
Potri.003G223300 Populus trichocarpa HOM05D004453 ORTHO05D005375 1.2e-48 197.6 220 50.5
Nitab4.5_0002355g0020 Nicotiana tabacum HOM05D004453 ORTHO05D005375 5.2e-47 192.2 203 54.2
CARHR088030 Cardamine hirsuta HOM05D004453 ORTHO05D005375 8.8e-47 191.4 199 50.8
AL3G25290 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 1.5e-46 190.7 173 57.8
AT3G13420 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 4.4e-46 189.1 173 57.2
Sp3g11610 Schrenkiella parvula HOM05D004453 ORTHO05D005375 1.3e-45 187.6 167 56.9
Thhalv10021458m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 2.8e-45 186.4 203 47.3
Carub.0003s1279 Capsella rubella HOM05D004453 ORTHO05D005375 1.1e-44 184.5 217 47.9
A05p36110 Brassica napus HOM05D004453 ORTHO05D005375 3.1e-44 183.0 154 57.8
SMO203G0107 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 3.1e-44 183.0 186 52.7
SMO271G0148 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 4.1e-44 182.6 184 51.1
C05p54480 Brassica napus HOM05D004453 ORTHO05D005375 5.4e-44 182.2 154 56.5
BolC5t34115H Brassica oleracea HOM05D004453 ORTHO05D005375 5.4e-44 182.2 154 56.5
AagrBONN_evm.TU.Sc2ySwM_228.4359 Anthoceros agrestis HOM05D004453 ORTHO05D005375 7.0e-44 181.8 183 52.5
Mapoly0036s0042 Marchantia polymorpha HOM05D004453 ORTHO05D005375 1.6e-43 180.6 213 45.1
SHI06880 Sapria himalayana HOM05D004453 ORTHO05D005375 3.8e-42 176.0 172 54.1
Nitab4.5_0000075g0210 Nicotiana tabacum HOM05D004453 ORTHO05D005375 3.6e-40 169.5 203 47.8
BcaC05g29180 Brassica carinata HOM05D004453 ORTHO05D005375 1.5e-38 164.1 138 56.5
SHI31305 Sapria himalayana HOM05D004453 ORTHO05D005375 7.5e-38 161.8 198 47.5
SalBow3G0087 Salvia bowleyana HOM05D004453 ORTHO05D005375 4.9e-37 159.1 157 51.6
unitig_62.g23532 Utricularia gibba HOM05D004453 ORTHO05D005375 9.2e-36 154.8 176 48.3
Pp3c14_21170 Physcomitrium patens HOM05D004453 ORTHO05D005375 7.8e-35 151.8 180 45.6
unitig_52.g17526 Utricularia gibba HOM05D004453 ORTHO05D005375 2.3e-34 150.2 195 44.1
BraA05t20635Z Brassica rapa HOM05D004453 ORTHO05D005375 8.6e-34 148.3 115 62.6
Pp3c2_4610 Physcomitrium patens HOM05D004453 ORTHO05D005375 9.5e-33 144.8 181 43.1
Pp3c1_38420 Physcomitrium patens HOM05D004453 ORTHO05D005375 3.6e-32 142.9 184 45.7
CARHR152870 Cardamine hirsuta HOM05D004453 ORTHO05D005375 2.0e-30 137.1 114 57.0
Lj1C553T1 Lonicera japonica HOM05D004453 ORTHO05D005375 2.2e-29 133.7 98 68.4
Lj1C553T2 Lonicera japonica HOM05D004453 ORTHO05D005375 2.4e-28 130.2 108 58.3
SMO353G0048 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 3.0e-26 123.2 208 36.1
HPP92_019023 Vanilla planifolia HOM05D004453 ORTHO05D005375 9.5e-25 118.2 91 63.7
Actinidia30440 Actinidia chinensis HOM05D004453 ORTHO05D005375 2.3e-23 113.6 98 63.3
Oeu060910.1 Olea europaea HOM05D004453 ORTHO05D005375 2.3e-18 97.1 104 51.0
Zm00001eb095200 Zea mays HOM05D004453 ORTHO05D005375 5.6e-17 92.4 110 49.1
Psat5g028160 Pisum sativum HOM05D004453 ORTHO05D005375 1.2e-11 74.7 95 47.4
SMO308G0081 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 1.2e-11 74.7 104 48.1
Psat5g028080 Pisum sativum HOM05D004453 ORTHO05D005375 3.5e-11 73.2 94 45.7
HPP92_019024 Vanilla planifolia HOM05D004453 ORTHO05D005375 5.1e-10 69.3 129 38.0
BcaB01g02219 Brassica carinata HOM05D004453 ORTHO05D005375 4.3e-09 66.2 88 36.4
CBR_g37640 Chara braunii HOM05D004453 ORTHO05D005375 6.2e-08 62.4 115 33.0
CBR_g35002 Chara braunii HOM05D000321 ORTHO05D000204 6.8e-07 58.9 63 49.2


User provided reference genes

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