Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G0865 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 3.5e-216 754.6 363 100.0
CDE07G0303 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 6.3e-157 557.8 432 68.5
GSVIVG01010839001 Vitis vinifera HOM05D001043 ORTHO05D006432 2.2e-109 399.8 348 56.0
MBI07_g18520_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 5.1e-106 388.7 429 48.3
GSVIVG01010840001 Vitis vinifera HOM05D001043 ORTHO05D006432 4.3e-105 385.6 363 52.6
Nn7g38145 Nelumbo nucifera HOM05D001043 ORTHO05D006432 2.1e-104 383.3 437 45.8
TAR636G2727 Trochodendron aralioides HOM05D001043 ORTHO05D006432 6.4e-101 371.7 429 45.9
TAR365G1116 Trochodendron aralioides HOM05D001043 ORTHO05D006432 2.1e-99 366.7 429 45.7
PSO832G3319 Papaver somniferum HOM05D001043 ORTHO05D006432 4.3e-97 359.0 430 44.2
PSO210G3503 Papaver somniferum HOM05D001043 ORTHO05D006432 9.6e-97 357.8 430 44.0
Aqoxy5G00006 Aquilegia oxysepala HOM05D001043 ORTHO05D006432 2.8e-96 356.3 427 45.9
Duzib212G0937 Durio zibethinus HOM05D001043 ORTHO05D006432 8.1e-96 354.8 437 43.0
Hma1.2p1_2415F.1_g321710 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 1.1e-95 354.4 428 44.6
Thecc.04G175400 Theobroma cacao HOM05D001043 ORTHO05D006432 2.4e-95 353.2 436 43.1
QL10p050774 Quercus lobata HOM05D001043 ORTHO05D006432 4.0e-95 352.4 438 42.9
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 2.0e-94 350.1 434 42.4
Nitab4.5_0006064g0010 Nicotiana tabacum HOM05D001043 ORTHO05D006432 1.7e-93 347.1 436 43.1
Ciclev10020184m.g Citrus clementina HOM05D001043 ORTHO05D006432 8.4e-93 344.7 434 43.1
MD04G1044900 Malus domestica HOM05D001043 ORTHO05D006432 2.4e-92 343.2 438 44.3
CANSAT78G0880 Cannabis sativa HOM05D001043 ORTHO05D006432 3.2e-92 342.8 440 43.4
Cpa.g.sc9.315 Carica papaya HOM05D001043 ORTHO05D006432 3.2e-92 342.8 434 42.2
Nitab4.5_0001586g0110 Nicotiana tabacum HOM05D001043 ORTHO05D006432 1.2e-91 340.9 436 42.4
CAN.G136.20 Capsicum annuum HOM05D001043 ORTHO05D006432 1.6e-91 340.5 436 41.5
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 2.1e-91 340.1 440 42.7
Sc19g0002850 Simmondsia chinensis HOM05D001043 ORTHO05D006432 2.7e-91 339.7 429 42.0
Cfa015192 Carpinus fangiana HOM05D001043 ORTHO05D006432 4.6e-91 339.0 435 42.3
Dinv44154 Davidia involucrata HOM05D001043 ORTHO05D006432 4.6e-91 339.0 427 43.6
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 1.0e-90 337.8 436 42.9
Peaxi162Scf00180g00029 Petunia axillaris HOM05D001043 ORTHO05D006432 2.3e-90 336.7 436 42.2
SalBow3G3815 Salvia bowleyana HOM05D001043 ORTHO05D006432 2.3e-90 336.7 438 41.1
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 3.0e-90 336.3 440 42.0
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 2.5e-89 333.2 438 42.0
Oeu027753.1 Olea europaea HOM05D001043 ORTHO05D006432 2.5e-89 333.2 438 40.6
Cc03_g12190 Coffea canephora HOM05D001043 ORTHO05D006432 5.6e-89 332.0 437 41.0
Lsat_1_v5_gn_3_125361 Lactuca sativa HOM05D001043 ORTHO05D006432 1.3e-88 330.9 438 42.2
Thhalv10007687m.g Eutrema salsugineum HOM05D001043 ORTHO05D006432 2.8e-88 329.7 427 41.7
RcHm_v2.0_Chr4g0406481 Rosa chinensis HOM05D001043 ORTHO05D006432 2.8e-88 329.7 438 42.2
Duzib268G1183 Durio zibethinus HOM05D001043 ORTHO05D006432 3.7e-88 329.3 433 42.0
Potri.017G027000 Populus trichocarpa HOM05D001043 ORTHO05D006432 6.2e-88 328.6 438 42.0
Actinidia27085 Actinidia chinensis HOM05D001043 ORTHO05D006432 1.4e-87 327.4 438 41.6
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 1.8e-87 327.0 440 40.7
Sopen06g018400 Solanum pennellii HOM05D001043 ORTHO05D006432 1.8e-87 327.0 436 41.1
AL1G16060 Arabidopsis lyrata HOM05D001043 ORTHO05D006432 2.4e-87 326.6 430 40.9
MSTRG.9754 Avicennia marina HOM05D001043 ORTHO05D006432 2.4e-87 326.6 438 40.9
ATR0743G191 Amborella trichopoda HOM05D001043 ORTHO05D006432 4.0e-87 325.9 437 42.1
Gorai.005G015800 Gossypium raimondii HOM05D001043 ORTHO05D006432 6.9e-87 325.1 436 41.5
Potri.007G130900 Populus trichocarpa HOM05D001043 ORTHO05D006432 6.9e-87 325.1 438 41.3
Medtr4g068130 Medicago truncatula HOM05D001043 ORTHO05D006432 1.2e-86 324.3 438 41.6
Haze_01462 Corylus avellana HOM05D001043 ORTHO05D006432 2.0e-86 323.6 465 39.6
Gohir.A02G011600 Gossypium hirsutum HOM05D001043 ORTHO05D006432 2.0e-86 323.6 436 41.3
Oeu022683.1 Olea europaea HOM05D001043 ORTHO05D006432 2.0e-86 323.6 438 40.2
Solyc06g053340.3 Solanum lycopersicum HOM05D001043 ORTHO05D006432 2.0e-86 323.6 436 40.6
PGSC0003DMG400016341 Solanum tuberosum HOM05D001043 ORTHO05D006432 2.0e-86 323.6 436 40.8
FAN12G0575 Fragaria x ananassa HOM05D001043 ORTHO05D006432 3.4e-86 322.8 430 42.1
AT1G06110 Arabidopsis thaliana HOM05D001043 ORTHO05D006432 4.5e-86 322.4 431 39.7
FvH4_4g10900 Fragaria vesca HOM05D001043 ORTHO05D006432 4.5e-86 322.4 430 42.1
Sp1g04910 Schrenkiella parvula HOM05D001043 ORTHO05D006432 5.8e-86 322.0 430 40.2
Sed0013039 Sechium edule HOM05D001043 ORTHO05D006432 5.8e-86 322.0 437 41.2
SGA_v2.0_scaffold12G06170 Striga asiatica HOM05D001043 ORTHO05D006432 7.6e-86 321.6 448 39.3
Gohir.D02G012400 Gossypium hirsutum HOM05D001043 ORTHO05D006432 9.9e-86 321.2 436 41.1
arahy.Tifrunner.gnm1.ann1.41HRQM Arachis hypogaea HOM05D001043 ORTHO05D006432 1.3e-85 320.9 438 40.0
THA.LOC104800885 Tarenaya hassleriana HOM05D001043 ORTHO05D006432 1.7e-85 320.5 429 39.9
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 2.2e-85 320.1 437 41.2
EL10Ac3g06009 Beta vulgaris HOM05D001043 ORTHO05D006432 3.8e-85 319.3 423 41.6
AUR62002348 Chenopodium quinoa HOM05D001043 ORTHO05D006432 4.9e-85 318.9 423 41.4
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 4.9e-85 318.9 438 39.0
Lj3g0012550 Lotus japonicus HOM05D001043 ORTHO05D006432 4.9e-85 318.9 438 40.2
Carub.0001s0544 Capsella rubella HOM05D001043 ORTHO05D006432 6.4e-85 318.5 427 40.3
C08p02400 Brassica napus HOM05D001043 ORTHO05D006432 1.1e-84 317.8 427 39.8
BolC8t47032H Brassica oleracea HOM05D001043 ORTHO05D006432 1.1e-84 317.8 427 39.8
FAN17G1903 Fragaria x ananassa HOM05D001043 ORTHO05D006432 1.1e-84 317.8 430 41.9
VMungo1127G0978 Vigna mungo HOM05D001043 ORTHO05D006432 1.4e-84 317.4 438 39.7
CARHR005620 Cardamine hirsuta HOM05D001043 ORTHO05D006432 1.9e-84 317.0 428 40.4
arahy.Tifrunner.gnm1.ann1.AV1GYT Arachis hypogaea HOM05D001043 ORTHO05D006432 4.2e-84 315.8 438 39.5
Lalb_Chr01g0003101 Lupinus albus HOM05D001043 ORTHO05D006432 7.1e-84 315.1 436 39.9
A08p36110 Brassica napus HOM05D001043 ORTHO05D006432 3.5e-83 312.8 418 40.0
BraA08t35518Z Brassica rapa HOM05D001043 ORTHO05D006432 3.5e-83 312.8 418 40.0
SHI29125 Sapria himalayana HOM05D001043 ORTHO05D006432 6.0e-83 312.0 434 39.4
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 1.8e-82 310.5 423 40.7
Eucgr.H00342 Eucalyptus grandis HOM05D001043 ORTHO05D006432 3.9e-82 309.3 438 39.5
Aa31LG1G7110 Aethionema arabicum HOM05D001043 ORTHO05D006432 6.7e-82 308.5 445 39.1
Ca_20798_v3 Cicer arietinum L. HOM05D001043 ORTHO05D006432 8.7e-82 308.1 441 39.9
Hund12412 Selenicereus undatus HOM05D001043 ORTHO05D006432 2.5e-81 306.6 423 40.7
TPR.G34197 Trifolium pratense HOM05D001043 ORTHO05D006432 4.3e-81 305.8 439 39.0
Lj3A0G11 Lonicera japonica HOM05D001043 ORTHO05D006432 3.7e-80 302.8 418 40.7
Ah.04g153480 Amaranthus hybridus HOM05D001043 ORTHO05D006432 4.8e-80 302.4 418 39.5
Sabra07G0106300 Salix brachista HOM05D001043 ORTHO05D006432 4.8e-80 302.4 483 37.3
Glyma.11G126500 Glycine max HOM05D001043 ORTHO05D006432 6.9e-79 298.5 418 39.2
HPP92_004532 Vanilla planifolia HOM05D001043 ORTHO05D006432 1.5e-78 297.4 454 37.7
Os11g0265200 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 3.4e-78 296.2 435 38.4
FAN07G1629 Fragaria x ananassa HOM05D001043 ORTHO05D006432 1.3e-77 294.3 352 44.6
HPP92_004523 Vanilla planifolia HOM05D001043 ORTHO05D006432 8.4e-77 291.6 454 37.2
ClCG05G007210 Citrullus lanatus HOM05D001043 ORTHO05D006432 1.3e-74 284.3 437 37.8
MELO3C006795.2 Cucumis melo HOM05D001043 ORTHO05D006432 3.0e-74 283.1 437 37.3
Hma1.2p1_2415F.1_g321720 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 3.0e-74 283.1 372 42.7
CiPaw.01G096300 Carya illinoinensis HOM05D001043 ORTHO05D006432 1.9e-73 280.4 418 38.3
Dinv05076 Davidia involucrata HOM05D001043 ORTHO05D006432 3.3e-73 279.6 356 43.5
CsaV3_3G015970 Cucumis sativus L. HOM05D001043 ORTHO05D006432 9.7e-73 278.1 400 39.2
MBI11_g10483_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 1.3e-72 277.7 430 39.1
Prupe.1G197800 Prunus persica HOM05D001043 ORTHO05D006432 4.8e-72 275.8 383 41.5
Rhsim02G0082200 Rhododendron simsii HOM05D001043 ORTHO05D006432 2.4e-71 273.5 435 38.4
Psat7g209600 Pisum sativum HOM05D001043 ORTHO05D006432 1.9e-68 263.8 381 39.9
Migut.G01345 Erythranthe guttata HOM05D001043 ORTHO05D006432 2.7e-67 260.0 383 37.1
SalBow3G1676 Salvia bowleyana HOM05D001043 ORTHO05D006432 4.6e-67 259.2 359 39.6
Actinidia26504 Actinidia chinensis HOM05D001043 ORTHO05D006432 1.0e-66 258.1 384 38.5
Phvul.011G053400 Phaseolus vulgaris HOM05D001043 ORTHO05D006432 2.5e-65 253.4 385 38.4
BcaC05g24309 Brassica carinata HOM05D001043 ORTHO05D006432 4.3e-65 252.7 432 35.0
C05p04390 Brassica napus HOM05D001043 ORTHO05D006432 4.3e-65 252.7 432 35.0
BolC5t29212H Brassica oleracea HOM05D001043 ORTHO05D006432 4.3e-65 252.7 432 35.0
Rhsim02G0082300 Rhododendron simsii HOM05D001043 ORTHO05D006432 1.4e-63 247.7 392 39.3
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 6.5e-61 238.8 363 39.7
SMO203G0209 Selaginella moellendorffii HOM05D001043 ORTHO05D006432 1.8e-58 230.7 425 32.7
BcaB02g06824 Brassica carinata HOM05D001043 ORTHO05D006432 5.7e-57 225.7 435 32.9
Mapoly0014s0053 Marchantia polymorpha HOM05D001043 ORTHO05D006432 7.4e-57 225.3 418 32.1
CiPaw.02G052200 Carya illinoinensis HOM05D001043 ORTHO05D006432 1.8e-55 220.7 178 59.0
QL10p050755 Quercus lobata HOM05D001043 ORTHO05D006432 1.8e-55 220.7 181 59.1
SalBow3G2442 Salvia bowleyana HOM05D001043 ORTHO05D006432 5.5e-52 209.1 181 54.1
Zm00001eb168760 Zea mays HOM05D001043 ORTHO05D006432 1.0e-50 204.9 374 34.2
COL.COLO4_10086 Corchorus olitorius HOM05D001043 ORTHO05D006432 3.3e-49 199.9 273 42.9
Os11g0264700 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 8.2e-48 195.3 421 32.5
CiPaw.02G052100 Carya illinoinensis HOM05D001043 ORTHO05D006432 7.7e-46 188.7 146 58.2
Pp3c5_14310 Physcomitrium patens HOM05D001043 ORTHO05D006432 1.9e-44 184.1 181 50.8
BraA10t42737Z Brassica rapa HOM05D001043 ORTHO05D006432 4.0e-42 176.4 433 29.3
Lj3A33G11 Lonicera japonica HOM05D001043 ORTHO05D006432 2.0e-41 174.1 152 53.3
A10p04730 Brassica napus HOM05D001043 ORTHO05D006432 3.3e-41 173.3 372 33.1
HanXRQChr09g0262091 Helianthus annuus HOM05D001043 ORTHO05D006432 1.3e-40 171.4 306 36.3
DCAR_028429 Daucus carota HOM05D001043 ORTHO05D006432 4.1e-39 166.4 308 33.4
Lj3A33G10 Lonicera japonica HOM05D001043 ORTHO05D006432 4.1e-39 166.4 144 55.6
SEGI_03011 Sequoiadendron giganteum HOM05D001043 ORTHO05D006432 8.0e-35 152.1 140 50.0
CBR_g726 Chara braunii HOM05D001043 ORTHO05D006432 2.8e-32 143.7 184 43.5
Cre01.g005900 Chlamydomonas reinhardtii HOM05D001043 ORTHO05D006432 5.9e-30 136.0 463 24.8
Ciclev10023406m.g Citrus clementina HOM05D001043 ORTHO05D006432 1.5e-28 131.3 320 30.6
HanXRQChr09g0262081 Helianthus annuus HOM05D001043 ORTHO05D006432 1.2e-22 111.7 101 50.5
DCAR_028430 Daucus carota HOM05D001043 ORTHO05D006432 5.0e-21 106.3 94 54.3
Hma1.2p1_1466F.1_g285390 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 6.4e-16 89.4 233 30.5
PGR142G2310 Punica granatum HOM05D001043 ORTHO05D006432 3.2e-15 87.0 72 51.4
Rhsim02G0082000 Rhododendron simsii HOM05D000432 ORTHO05D000320 5.4e-15 86.3 140 36.4
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 2.1e-11 74.3 191 29.3
HanXRQChr12g0370191 Helianthus annuus HOM05D001043 ORTHO05D006432 6.8e-10 69.3 74 45.9
MCO09G831 Micromonas commoda HOM05D001043 ORTHO05D006432 2.6e-09 67.4 164 32.9
Lalb_Chr13g0297731 Lupinus albus HOM05D006234 ORTHO05D007813 8.3e-08 62.4 138 29.0
SEGI_33750 Sequoiadendron giganteum HOM05D001043 ORTHO05D006432 1.1e-07 62.0 59 50.8
AUR62030948 Chenopodium quinoa HOM05D006234 ORTHO05D007813 3.2e-07 60.5 146 30.1
EL10Ac5g10733 Beta vulgaris HOM05D006234 ORTHO05D007813 1.6e-06 58.2 136 30.1
AUR62008196 Chenopodium quinoa HOM05D006234 ORTHO05D007813 2.1e-06 57.8 146 29.5
Ah.02g110560 Amaranthus hybridus HOM05D006234 ORTHO05D007813 2.7e-06 57.4 136 28.7


User provided reference genes

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