Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G0864 Ceratophyllum demersum HOM05D005868 ORTHO05D006964 2.3e-102 375.9 247 100.0
Manes.07G113800 Manihot esculenta HOM05D005868 ORTHO05D006964 4.0e-54 215.7 211 57.8
Aqoxy6G01600 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 8.9e-54 214.5 220 50.9
Aqoxy7G02135 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 8.9e-54 214.5 220 50.9
Thecc.09G124300 Theobroma cacao HOM05D005868 ORTHO05D006964 1.2e-53 214.2 212 52.8
MELO3C004517.2 Cucumis melo HOM05D005868 ORTHO05D006964 1.5e-53 213.8 216 52.3
CsaV3_2G002760 Cucumis sativus L. HOM05D005868 ORTHO05D006964 2.0e-53 213.4 216 51.9
Duzib150G0047 Durio zibethinus HOM05D005868 ORTHO05D006964 4.4e-53 212.2 215 50.7
Dinv41522 Davidia involucrata HOM05D005868 ORTHO05D006964 7.6e-53 211.5 212 56.6
Sed0015563 Sechium edule HOM05D005868 ORTHO05D006964 9.9e-53 211.1 216 60.6
Gohir.A05G017300 Gossypium hirsutum HOM05D005868 ORTHO05D006964 1.7e-52 210.3 215 50.7
Lj2A993T36 Lonicera japonica HOM05D005868 ORTHO05D006964 2.9e-52 209.5 211 53.1
TAR383G0149 Trochodendron aralioides HOM05D005868 ORTHO05D006964 2.9e-52 209.5 213 60.1
Ciclev10009129m.g Citrus clementina HOM05D005868 ORTHO05D006964 3.7e-52 209.1 212 50.9
COL.COLO4_11936 Corchorus olitorius HOM05D005868 ORTHO05D006964 3.7e-52 209.1 212 60.4
Gorai.009G018600 Gossypium raimondii HOM05D005868 ORTHO05D006964 3.7e-52 209.1 215 51.2
CSS0026098 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 4.9e-52 208.8 221 53.8
QL02p087973 Quercus lobata HOM05D005868 ORTHO05D006964 6.4e-52 208.4 211 50.7
QL93p0150_0012 Quercus lobata HOM05D005868 ORTHO05D006964 6.4e-52 208.4 211 50.7
Actinidia40461 Actinidia chinensis HOM05D005868 ORTHO05D006964 1.1e-51 207.6 220 50.5
PSO170G5445 Papaver somniferum HOM05D005868 ORTHO05D006964 1.1e-51 207.6 219 49.8
Nn2g12624 Nelumbo nucifera HOM05D005868 ORTHO05D006964 1.4e-51 207.2 215 49.3
Cpa.g.sc165.3 Carica papaya HOM05D005868 ORTHO05D006964 1.9e-51 206.8 214 51.4
Atru.chr7.1216 Acer truncatum HOM05D005868 ORTHO05D006964 4.1e-51 205.7 212 50.5
Gohir.D05G018200 Gossypium hirsutum HOM05D005868 ORTHO05D006964 5.4e-51 205.3 215 50.2
PSO455G0232 Papaver somniferum HOM05D005868 ORTHO05D006964 2.1e-50 203.4 219 48.9
CiPaw.06G052800 Carya illinoinensis HOM05D005868 ORTHO05D006964 2.7e-50 203.0 220 50.0
DCAR_009552 Daucus carota HOM05D005868 ORTHO05D006964 1.0e-49 201.1 212 50.0
THA.LOC104808997 Tarenaya hassleriana HOM05D005868 ORTHO05D006964 1.0e-49 201.1 212 50.0
Prupe.7G240900 Prunus persica HOM05D005868 ORTHO05D006964 1.3e-49 200.7 212 49.5
RcHm_v2.0_Chr2g0088971 Rosa chinensis HOM05D005868 ORTHO05D006964 1.3e-49 200.7 212 50.5
vmacro16514 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 1.3e-49 200.7 212 49.1
AT2G25570 Arabidopsis thaliana HOM05D005868 ORTHO05D006964 1.7e-49 200.3 212 50.0
FAN08G1464 Fragaria x ananassa HOM05D005868 ORTHO05D006964 2.3e-49 199.9 212 50.5
FAN13G1606 Fragaria x ananassa HOM05D001017 ORTHO05D006964 2.3e-49 199.9 212 50.5
RcHm_v2.0_Chr2g0088741 Rosa chinensis HOM05D005868 ORTHO05D006964 3.0e-49 199.5 212 50.5
Eucgr.C04189 Eucalyptus grandis HOM05D005868 ORTHO05D006964 3.9e-49 199.1 212 50.0
AL4G17010 Arabidopsis lyrata HOM05D005868 ORTHO05D006964 5.1e-49 198.7 212 50.0
MD02G1034400 Malus domestica HOM05D005868 ORTHO05D006964 5.1e-49 198.7 211 59.7
FvH4_5g12980 Fragaria vesca HOM05D005868 ORTHO05D006964 8.6e-49 198.0 212 50.0
Carub.0004s0528 Capsella rubella HOM05D005868 ORTHO05D006964 1.1e-48 197.6 212 49.5
Sp4g04970 Schrenkiella parvula HOM05D005868 ORTHO05D006964 1.1e-48 197.6 212 50.0
CANSAT35G1449 Cannabis sativa HOM05D005868 ORTHO05D006964 1.5e-48 197.2 213 62.4
TWI32G0760 Tripterygium wilfordii HOM05D005868 ORTHO05D006964 2.5e-48 196.4 215 72.6
Zm00001eb205580 Zea mays HOM05D005868 ORTHO05D006964 2.5e-48 196.4 217 46.1
CAN.G377.18 Capsicum annuum HOM05D005868 ORTHO05D006964 3.3e-48 196.1 212 49.1
Lj3g0005718 Lotus japonicus HOM05D005868 ORTHO05D006964 3.3e-48 196.1 212 50.0
Rhsim01G0074500 Rhododendron simsii HOM05D005868 ORTHO05D006964 3.3e-48 196.1 221 48.0
MD15G1175100 Malus domestica HOM05D005868 ORTHO05D006964 4.3e-48 195.7 211 49.3
Os02g0202600 Oryza sativa ssp. japonica HOM05D005868 ORTHO05D006964 4.3e-48 195.7 217 47.0
BcaC07g40857 Brassica carinata HOM05D005868 ORTHO05D006964 5.6e-48 195.3 212 49.1
A09p55560 Brassica napus HOM05D005868 ORTHO05D006964 5.6e-48 195.3 212 49.1
BraA09t40958Z Brassica rapa HOM05D005868 ORTHO05D006964 5.6e-48 195.3 212 49.1
Hund09137 Selenicereus undatus HOM05D005868 ORTHO05D006964 7.3e-48 194.9 220 68.6
ATR0322G055 Amborella trichopoda HOM05D005868 ORTHO05D006964 1.2e-47 194.1 216 48.6
VMungo0251G3516 Vigna mungo HOM05D005868 ORTHO05D006964 1.2e-47 194.1 212 50.0
BcaB08g35195 Brassica carinata HOM05D005868 ORTHO05D006964 1.6e-47 193.7 212 48.1
Solyc12g006670.3 Solanum lycopersicum HOM05D005868 ORTHO05D006964 1.6e-47 193.7 212 49.1
Sopen12g002620 Solanum pennellii HOM05D005868 ORTHO05D006964 1.6e-47 193.7 212 49.1
PGSC0003DMG402020668 Solanum tuberosum HOM05D005868 ORTHO05D006964 1.6e-47 193.7 212 49.1
C08p38550 Brassica napus HOM05D005868 ORTHO05D006964 2.1e-47 193.4 212 48.6
BolC8t51427H Brassica oleracea HOM05D005868 ORTHO05D006964 2.1e-47 193.4 212 48.6
RcHm_v2.0_Chr2g0089021 Rosa chinensis HOM05D005868 ORTHO05D006964 2.1e-47 193.4 220 48.6
Medtr8g073315 Medicago truncatula HOM05D005868 ORTHO05D006964 2.8e-47 193.0 212 50.0
FAN18G3119 Fragaria x ananassa HOM05D005868 ORTHO05D006964 3.6e-47 192.6 212 49.1
Sc08g0006690 Simmondsia chinensis HOM05D005868 ORTHO05D006964 3.6e-47 192.6 216 69.4
CSS0035520 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 6.2e-47 191.8 250 55.2
CSS0040694 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 6.2e-47 191.8 250 55.2
Peaxi162Scf00984g00020 Petunia axillaris HOM05D005868 ORTHO05D006964 6.2e-47 191.8 212 54.2
ClCG11G002940 Citrullus lanatus HOM05D005868 ORTHO05D006964 8.1e-47 191.4 265 43.0
Migut.N02220 Erythranthe guttata HOM05D005868 ORTHO05D006964 1.1e-46 191.0 214 47.2
Prupe.6G277700 Prunus persica HOM05D005868 ORTHO05D006964 1.1e-46 191.0 197 50.3
Nitab4.5_0005139g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 1.4e-46 190.7 213 49.3
DCAR_023114 Daucus carota HOM05D005868 ORTHO05D006964 1.8e-46 190.3 229 46.3
Eucgr.C04191 Eucalyptus grandis HOM05D005868 ORTHO05D006964 2.4e-46 189.9 198 50.5
HPP92_000683 Vanilla planifolia HOM05D005868 ORTHO05D006964 2.4e-46 189.9 217 45.2
Ca_25916_v3 Cicer arietinum L. HOM05D005868 ORTHO05D006964 3.1e-46 189.5 212 69.8
Glyma.08G274300 Glycine max HOM05D005868 ORTHO05D006964 3.1e-46 189.5 222 46.8
Phvul.003G286500 Phaseolus vulgaris HOM05D005868 ORTHO05D006964 4.0e-46 189.1 212 48.6
Potri.001G219400 Populus trichocarpa HOM05D005868 ORTHO05D006964 4.0e-46 189.1 211 55.0
Glyma.18G237200 Glycine max HOM05D005868 ORTHO05D006964 5.2e-46 188.7 223 47.5
HPP92_000663 Vanilla planifolia HOM05D005868 ORTHO05D006964 6.8e-46 188.3 217 44.7
MSTRG.20108 Avicennia marina HOM05D005868 ORTHO05D006964 2.6e-45 186.4 211 46.9
Lalb_Chr12g0197851 Lupinus albus HOM05D005868 ORTHO05D006964 2.6e-45 186.4 220 45.9
TPR.G21777 Trifolium pratense HOM05D005868 ORTHO05D006964 4.4e-45 185.7 212 53.3
Ah.09g226020 Amaranthus hybridus HOM05D005868 ORTHO05D006964 5.8e-45 185.3 213 68.1
arahy.Tifrunner.gnm1.ann1.1Z3A91 Arachis hypogaea HOM05D005868 ORTHO05D006964 5.8e-45 185.3 212 46.2
SGA_v2.0_scaffold120G32883 Striga asiatica HOM05D005868 ORTHO05D006964 1.3e-44 184.1 212 69.8
EL10Ac8g18635 Beta vulgaris HOM05D005868 ORTHO05D006964 2.2e-44 183.3 211 47.4
PGR102G1613 Punica granatum HOM05D005868 ORTHO05D006964 2.2e-44 183.3 210 65.7
Aa31LG6G5930 Aethionema arabicum HOM05D005868 ORTHO05D006964 4.9e-44 182.2 239 45.2
AUR62013373 Chenopodium quinoa HOM05D005868 ORTHO05D006964 8.4e-44 181.4 211 71.1
unitig_37.g12428 Utricularia gibba HOM05D005868 ORTHO05D006964 8.4e-44 181.4 211 44.5
arahy.Tifrunner.gnm1.ann1.T37JIE Arachis hypogaea HOM05D005868 ORTHO05D006964 1.9e-43 180.3 212 46.2
GSVIVG01015515001 Vitis vinifera HOM05D000032 ORTHO05D001620 3.2e-43 179.5 209 46.4
ECA238G3092 Erigeron canadensis HOM05D005868 ORTHO05D006964 4.2e-43 179.1 212 45.3
Sabra16G0124800 Salix brachista HOM05D005868 ORTHO05D006964 4.2e-43 179.1 218 45.9
HanXRQChr07g0197781 Helianthus annuus HOM05D005868 ORTHO05D006964 7.1e-43 178.3 212 45.3
SHI18654 Sapria himalayana HOM05D005868 ORTHO05D006964 1.6e-42 177.2 212 46.7
Haze_25605 Corylus avellana HOM05D005868 ORTHO05D006964 6.0e-42 175.3 235 44.7
Lsat_1_v5_gn_2_95580 Lactuca sativa HOM05D005868 ORTHO05D006964 8.7e-41 171.4 211 43.6
Cc06_g08680 Coffea canephora HOM05D005868 ORTHO05D006964 1.5e-40 170.6 99 80.8
Medtr0040s0110 Medicago truncatula HOM05D005868 ORTHO05D006964 1.2e-37 161.0 212 43.9
Thhalv10023629m.g Eutrema salsugineum HOM05D005868 ORTHO05D006964 2.6e-37 159.8 99 76.8
CARHR115770 Cardamine hirsuta HOM05D005868 ORTHO05D006964 3.8e-36 156.0 99 73.7
SalBow5G0777 Salvia bowleyana HOM05D005868 ORTHO05D006964 7.1e-35 151.8 222 62.6
SEGI_01723 Sequoiadendron giganteum HOM05D005868 ORTHO05D006964 1.8e-30 137.1 221 36.7
HanXRQChr14g0452021 Helianthus annuus HOM05D005868 ORTHO05D006964 2.6e-29 133.3 212 40.1
FvH4_1g05000 Fragaria vesca HOM05D005868 ORTHO05D006964 1.6e-26 124.0 76 76.3
Nitab4.5_0010819g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 9.6e-24 114.8 159 42.1
CAN.G377.12 Capsicum annuum HOM05D005868 ORTHO05D006964 1.8e-22 110.5 159 39.6
FAN23G1471 Fragaria x ananassa HOM05D005868 ORTHO05D006964 9.0e-22 108.2 66 78.8
MBI04_g07645_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 2.2e-20 103.6 160 40.0
Mapoly0058s0058 Marchantia polymorpha HOM05D005868 ORTHO05D006964 8.4e-20 101.7 103 53.4
Pp3c21_8470 Physcomitrium patens HOM05D005868 ORTHO05D006964 1.2e-18 97.8 101 52.5
Nitab4.5_0002556g0090 Nicotiana tabacum HOM05D005868 ORTHO05D006964 1.6e-18 97.4 149 38.9
vmacro20542 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 1.1e-14 84.7 46 82.6
RcHm_v2.0_Chr2g0088781 Rosa chinensis HOM05D005868 ORTHO05D006964 6.9e-14 82.0 54 70.4
RcHm_v2.0_Chr2g0088921 Rosa chinensis HOM05D005868 ORTHO05D006964 1.3e-12 77.8 144 34.7
MBI04_g07643_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 2.2e-12 77.0 53 67.9
RcHm_v2.0_Chr2g0088941 Rosa chinensis HOM05D005868 ORTHO05D006964 2.5e-11 73.6 43 76.7
RcHm_v2.0_Chr2g0088761 Rosa chinensis HOM05D005868 ORTHO05D006964 1.8e-09 67.4 62 54.8
CARHR115780 Cardamine hirsuta HOM05D005868 ORTHO05D006964 6.7e-09 65.5 62 51.6
AUR62033475 Chenopodium quinoa HOM05D005868 ORTHO05D006964 1.9e-08 63.9 133 31.6
CBR_g783 Chara braunii HOM05D005868 ORTHO05D006964 7.4e-08 62.0 75 48.0
RcHm_v2.0_Chr2g0088771 Rosa chinensis HOM05D005868 ORTHO05D006964 7.4e-08 62.0 36 72.2
RcHm_v2.0_Chr2g0088931 Rosa chinensis HOM05D005868 ORTHO05D006964 7.4e-08 62.0 36 72.2
FAN02G0970 Fragaria x ananassa HOM05D023359 ORTHO05D006964 9.7e-08 61.6 61 52.5
Psat7g152720 Pisum sativum HOM05D005868 ORTHO05D006964 8.2e-07 58.5 56 53.6
RcHm_v2.0_Chr3g0491871 Rosa chinensis HOM05D005868 ORTHO05D006964 5.3e-06 55.8 59 49.2


User provided reference genes

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