Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G0856 Ceratophyllum demersum HOM05D005423 ORTHO05D006223 4.0e-119 431.4 215 100.0
CDE04G2898 Ceratophyllum demersum HOM05D005423 ORTHO05D006223 1.1e-55 220.7 194 59.8
CDE02G2420 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 1.9e-52 209.9 179 60.9
MBI19_g30013_MAGBIO Magnolia biondii HOM05D005423 ORTHO05D006223 7.1e-31 138.3 160 44.4
QL05p063092 Quercus lobata HOM05D005423 ORTHO05D006223 7.1e-31 138.3 193 40.9
TAR636G0950 Trochodendron aralioides HOM05D005423 ORTHO05D006223 4.6e-30 135.6 141 46.8
MD00G1097400 Malus domestica HOM05D005423 ORTHO05D006223 6.0e-30 135.2 133 48.1
Cfa000754 Carpinus fangiana HOM05D005423 ORTHO05D006223 1.1e-28 131.0 150 45.3
Hma1.2p1_0410F.1_g147050 Hydrangea macrophylla HOM05D005423 ORTHO05D006223 7.3e-28 128.3 148 44.6
Sc04g0008360 Simmondsia chinensis HOM05D005423 ORTHO05D006223 9.6e-28 127.9 149 47.0
Prupe.4G102300 Prunus persica HOM05D005423 ORTHO05D006223 1.2e-27 127.5 133 45.1
CANSAT35G1706 Cannabis sativa HOM05D005423 ORTHO05D006223 2.8e-27 126.3 161 41.0
Potri.001G440800 Populus trichocarpa HOM05D005423 ORTHO05D006223 2.8e-27 126.3 150 44.7
CiPaw.09G149100 Carya illinoinensis HOM05D005423 ORTHO05D006223 1.8e-26 123.6 190 36.8
FAN16G1003 Fragaria x ananassa HOM05D005423 ORTHO05D006223 8.9e-26 121.3 132 44.7
Duzib160G0446 Durio zibethinus HOM05D005423 ORTHO05D006223 1.2e-25 120.9 145 44.1
Atru.chr10.659 Acer truncatum HOM05D005423 ORTHO05D006223 1.5e-25 120.6 149 41.6
FvH4_3g11440 Fragaria vesca HOM05D005423 ORTHO05D006223 2.0e-25 120.2 200 37.5
Ciclev10017493m.g Citrus clementina HOM05D005423 ORTHO05D006223 2.6e-25 119.8 154 42.2
Glyma.15G191500 Glycine max HOM05D005423 ORTHO05D006223 3.4e-25 119.4 133 45.9
Nitab4.5_0006659g0010 Nicotiana tabacum HOM05D005423 ORTHO05D006223 3.4e-25 119.4 137 44.5
Manes.03G066900 Manihot esculenta HOM05D005423 ORTHO05D006223 4.4e-25 119.0 167 37.1
Nitab4.5_0004015g0040 Nicotiana tabacum HOM05D005423 ORTHO05D006223 4.4e-25 119.0 156 42.3
SGA_v2.0_scaffold1G00298 Striga asiatica HOM05D005423 ORTHO05D006223 4.4e-25 119.0 134 45.5
CAN.G84.20 Capsicum annuum HOM05D005423 ORTHO05D006223 5.8e-25 118.6 153 38.6
HanXRQChr01g0020631 Helianthus annuus HOM05D005423 ORTHO05D006223 5.8e-25 118.6 142 41.5
Thecc.06G005400 Theobroma cacao HOM05D005423 ORTHO05D006223 5.8e-25 118.6 142 43.7
TWI38G0231 Tripterygium wilfordii HOM05D005423 ORTHO05D006223 7.6e-25 118.2 145 40.0
Aqoxy2G01436 Aquilegia oxysepala HOM05D005423 ORTHO05D006223 4.9e-24 115.5 168 37.5
Gohir.A02G088801 Gossypium hirsutum HOM05D005423 ORTHO05D006223 4.9e-24 115.5 149 40.9
Lsat_1_v5_gn_1_91741 Lactuca sativa HOM05D005423 ORTHO05D006223 4.9e-24 115.5 148 37.2
Lj1P1155T48 Lonicera japonica HOM05D005423 ORTHO05D006223 8.4e-24 114.8 205 32.7
Sopen11g030350 Solanum pennellii HOM05D005423 ORTHO05D006223 8.4e-24 114.8 183 37.7
Gohir.D02G104700 Gossypium hirsutum HOM05D005423 ORTHO05D006223 1.1e-23 114.4 149 40.3
Gorai.005G118900 Gossypium raimondii HOM05D005423 ORTHO05D006223 1.1e-23 114.4 149 40.3
Migut.M01932 Erythranthe guttata HOM05D005423 ORTHO05D006223 1.9e-23 113.6 162 37.0
Solyc11g072680.1 Solanum lycopersicum HOM05D005423 ORTHO05D006223 2.4e-23 113.2 169 38.5
PGSC0003DMG400025363 Solanum tuberosum HOM05D005423 ORTHO05D006223 2.4e-23 113.2 150 38.7
AUR62008089 Chenopodium quinoa HOM05D005423 ORTHO05D006223 3.2e-23 112.8 137 38.7
EL10Ac5g10610 Beta vulgaris HOM05D005423 ORTHO05D006223 2.1e-22 110.2 166 34.9
AUR62028667 Chenopodium quinoa HOM05D005423 ORTHO05D006223 2.1e-22 110.2 150 36.7
Sc21g0002200 Simmondsia chinensis HOM05D005423 ORTHO05D006223 2.1e-22 110.2 138 42.8
TPR.G22906 Trifolium pratense HOM05D005423 ORTHO05D006223 3.5e-22 109.4 155 38.1
Haze_05969 Corylus avellana HOM05D005423 ORTHO05D006223 4.6e-22 109.0 120 45.0
Sc21g0002210 Simmondsia chinensis HOM05D005423 ORTHO05D006223 4.6e-22 109.0 153 39.9
Ah.02g124440 Amaranthus hybridus HOM05D005423 ORTHO05D006223 7.8e-22 108.2 146 36.3
Lalb_Chr11g0073251 Lupinus albus HOM05D005423 ORTHO05D006223 7.8e-22 108.2 194 34.5
AUR62028668 Chenopodium quinoa HOM05D005423 ORTHO05D006223 1.0e-21 107.8 137 38.7
MBI19_g33491_MAGBIO Magnolia biondii HOM05D005423 ORTHO05D006223 3.0e-21 106.3 116 46.6
PSO782G2497 Papaver somniferum HOM05D005423 ORTHO05D006223 5.1e-21 105.5 141 38.3
Ca_02385_v3 Cicer arietinum L. HOM05D005423 ORTHO05D006223 6.6e-21 105.1 150 37.3
AUR62008091 Chenopodium quinoa HOM05D005423 ORTHO05D006223 1.1e-20 104.4 137 36.5
AUR62008092 Chenopodium quinoa HOM05D005423 ORTHO05D006223 1.5e-20 104.0 150 37.3
Sp1g26680 Schrenkiella parvula HOM05D005423 ORTHO05D006223 1.9e-20 103.6 169 36.7
EL10Ac5g10640 Beta vulgaris HOM05D005423 ORTHO05D006223 4.3e-20 102.4 167 31.1
BcaB04g18206 Brassica carinata HOM05D005423 ORTHO05D006223 4.3e-20 102.4 152 38.8
Psat1g018720 Pisum sativum HOM05D005423 ORTHO05D006223 5.6e-20 102.1 164 37.2
Sabra16G0298100 Salix brachista HOM05D005423 ORTHO05D006223 5.6e-20 102.1 117 43.6
EL10Ac5g10674 Beta vulgaris HOM05D005423 ORTHO05D006223 7.3e-20 101.7 178 30.3
Carub.0001s2910 Capsella rubella HOM05D005423 ORTHO05D006223 7.3e-20 101.7 138 42.8
Sabra16G0300100 Salix brachista HOM05D005423 ORTHO05D006223 7.3e-20 101.7 117 43.6
Rhsim13G0126500 Rhododendron simsii HOM05D005423 ORTHO05D006223 1.3e-19 100.9 151 38.4
Lj6g0018842 Lotus japonicus HOM05D005423 ORTHO05D006223 2.1e-19 100.1 153 37.3
Medtr2g047120 Medicago truncatula HOM05D005423 ORTHO05D006223 2.1e-19 100.1 151 36.4
AL1G44970 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 2.8e-19 99.8 146 41.8
Thhalv10009325m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 3.6e-19 99.4 161 37.3
BcaC07g37806 Brassica carinata HOM05D005423 ORTHO05D006223 4.8e-19 99.0 152 37.5
BolC8t48195H Brassica oleracea HOM05D005423 ORTHO05D006223 4.8e-19 99.0 152 37.5
PSO210G3101 Papaver somniferum HOM05D005423 ORTHO05D006223 4.8e-19 99.0 163 30.7
Aa31LG6G12020 Aethionema arabicum HOM05D005423 ORTHO05D006223 6.2e-19 98.6 145 42.1
A08p11040 Brassica napus HOM05D005423 ORTHO05D006223 6.2e-19 98.6 152 36.8
BcaC07g39399 Brassica carinata HOM05D005423 ORTHO05D006223 8.1e-19 98.2 165 37.6
A06p18470 Brassica napus HOM05D005423 ORTHO05D006223 8.1e-19 98.2 162 37.7
BraA08t33095Z Brassica rapa HOM05D005423 ORTHO05D006223 8.1e-19 98.2 152 36.8
BcaB01g00727 Brassica carinata HOM05D005423 ORTHO05D006223 1.1e-18 97.8 162 37.7
THA.LOC104814335 Tarenaya hassleriana HOM05D005423 ORTHO05D006223 1.1e-18 97.8 153 37.9
CARHR030270 Cardamine hirsuta HOM05D005423 ORTHO05D006223 1.4e-18 97.4 141 39.7
C08p24310 Brassica napus HOM05D005423 ORTHO05D006223 1.8e-18 97.1 165 37.6
BolC8t50049H Brassica oleracea HOM05D005423 ORTHO05D006223 3.1e-18 96.3 165 37.0
Carub.0006s3088 Capsella rubella HOM05D005423 ORTHO05D006223 1.5e-17 94.0 149 38.3
AT1G30800 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 2.0e-17 93.6 195 34.4
COL.COLO4_26869 Corchorus olitorius HOM05D005423 ORTHO05D006223 4.5e-17 92.4 133 40.6
Oeu063151.1 Olea europaea HOM05D005423 ORTHO05D006223 1.2e-14 84.3 93 45.2
Mapoly0033s0033 Marchantia polymorpha HOM05D005423 ORTHO05D006223 2.1e-14 83.6 172 32.0
Oeu000496.1 Olea europaea HOM05D005423 ORTHO05D006223 7.9e-14 81.6 83 45.8
FAN21G0600 Fragaria x ananassa HOM05D005423 ORTHO05D006223 1.8e-13 80.5 80 46.2
FAN25G0767 Fragaria x ananassa HOM05D005423 ORTHO05D006223 1.8e-13 80.5 157 33.1
Thhalv10026388m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 2.3e-13 80.1 146 31.5
Phvul.009G218400 Phaseolus vulgaris HOM05D005423 ORTHO05D006223 6.7e-13 78.6 174 35.6
A03p59360 Brassica napus HOM05D005423 ORTHO05D006223 8.7e-13 78.2 135 33.3
C07p57390 Brassica napus HOM05D005423 ORTHO05D006223 8.7e-13 78.2 135 34.1
BolC7t46208H Brassica oleracea HOM05D005423 ORTHO05D006223 8.7e-13 78.2 135 34.1
BraA03t14993Z Brassica rapa HOM05D005423 ORTHO05D006223 8.7e-13 78.2 135 33.3
Sp7g27780 Schrenkiella parvula HOM05D005423 ORTHO05D006223 1.1e-12 77.8 134 32.8
BcaNung00507 Brassica carinata HOM05D005423 ORTHO05D006223 1.9e-12 77.0 136 33.8
Carub.0007s1066 Capsella rubella HOM05D005423 ORTHO05D006223 5.6e-12 75.5 144 31.9
Mapoly0095s0061 Marchantia polymorpha HOM05D005423 ORTHO05D006223 5.6e-12 75.5 170 27.1
AL7G22260 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 9.6e-12 74.7 144 36.1
AT4G12950 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 9.6e-12 74.7 111 38.7
AT4G29980 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 1.6e-11 73.9 144 35.4
CARHR237890 Cardamine hirsuta HOM05D005423 ORTHO05D006223 2.8e-11 73.2 132 32.6
Duzib043G0004 Durio zibethinus HOM05D005423 ORTHO05D006223 4.8e-11 72.4 132 35.6
AUR62007135 Chenopodium quinoa HOM05D005423 ORTHO05D006223 8.1e-11 71.6 102 39.2
Nn8g39654 Nelumbo nucifera HOM05D005423 ORTHO05D006223 8.1e-11 71.6 122 35.2
Pp3c1_4130 Physcomitrium patens HOM05D022662 ORTHO05D006223 1.1e-10 71.2 170 29.4
CSS0043111 Camellia sinensis var. sinensis HOM05D005305 ORTHO05D006394 6.9e-10 68.6 106 40.6
SMO220G0003 Selaginella moellendorffii HOM05D002232 ORTHO05D002323 6.9e-10 68.6 177 27.7
Pp3c6_3400 Physcomitrium patens HOM05D005423 ORTHO05D006223 9.0e-10 68.2 112 31.2
FvH4_1g24910 Fragaria vesca HOM05D005423 ORTHO05D006223 1.5e-09 67.4 89 42.7
Dinv19341 Davidia involucrata HOM05D005305 ORTHO05D006394 3.4e-09 66.2 145 32.4
Potri.011G155150 Populus trichocarpa HOM05D005423 ORTHO05D006223 4.5e-09 65.9 89 43.8
Pp3c3_10930 Physcomitrium patens HOM05D022662 ORTHO05D006223 5.8e-09 65.5 125 28.0
Sp7g28070 Schrenkiella parvula HOM05D005423 ORTHO05D006223 5.8e-09 65.5 127 31.5
FAN23G0143 Fragaria x ananassa HOM05D005423 ORTHO05D006223 7.6e-09 65.1 94 40.4
arahy.Tifrunner.gnm1.ann1.L56H08 Arachis hypogaea HOM05D002727 ORTHO05D002856 1.7e-08 63.9 109 33.0
A03p59580 Brassica napus HOM05D005423 ORTHO05D006223 2.9e-08 63.2 133 30.1
Thhalv10027436m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 2.9e-08 63.2 122 31.1
Aqoxy2G00907 Aquilegia oxysepala HOM05D002727 ORTHO05D002856 3.8e-08 62.8 94 37.2
arahy.Tifrunner.gnm1.ann1.A4HJXM Arachis hypogaea HOM05D002727 ORTHO05D002856 3.8e-08 62.8 109 33.0
CiPaw.06G012900 Carya illinoinensis HOM05D002727 ORTHO05D002856 3.8e-08 62.8 80 41.2
FAN18G3875 Fragaria x ananassa HOM05D005423 ORTHO05D006223 3.8e-08 62.8 90 41.1
BraA03t15014Z Brassica rapa HOM05D005423 ORTHO05D006223 4.9e-08 62.4 101 32.7
FvH4_5g18240 Fragaria vesca HOM05D005423 ORTHO05D006223 4.9e-08 62.4 90 40.0
SMO290G0002 Selaginella moellendorffii HOM05D005423 ORTHO05D006223 1.1e-07 61.2 135 30.4
AL7G23530 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 1.4e-07 60.8 95 32.6
Lalb_Chr17g0338701 Lupinus albus HOM05D002727 ORTHO05D002856 4.2e-07 59.3 139 33.1
CARHR238100 Cardamine hirsuta HOM05D005423 ORTHO05D006223 5.5e-07 58.9 90 32.2
AL1G27270 Arabidopsis lyrata HOM05D005305 ORTHO05D006394 7.1e-07 58.5 108 36.1
ClCG01G006130 Citrullus lanatus HOM05D002727 ORTHO05D002856 7.1e-07 58.5 138 30.4
MBI18_g38398_MAGBIO Magnolia biondii HOM05D007205 ORTHO05D009175 7.1e-07 58.5 123 32.5
Thecc.02G278300 Theobroma cacao HOM05D002727 ORTHO05D002856 7.1e-07 58.5 130 26.9
TAR622G1289 Trochodendron aralioides HOM05D002727 ORTHO05D002856 7.1e-07 58.5 129 31.0
arahy.Tifrunner.gnm1.ann1.AV0RHQ Arachis hypogaea HOM05D002727 ORTHO05D002856 1.2e-06 57.8 73 39.7
DCAR_001448 Daucus carota HOM05D005423 ORTHO05D006223 1.2e-06 57.8 115 27.0
FvH4_5g21920 Fragaria vesca HOM05D005423 ORTHO05D006223 1.2e-06 57.8 89 36.0
MD03G1035100 Malus domestica HOM05D002727 ORTHO05D002856 1.2e-06 57.8 140 29.3
Nn5g28774 Nelumbo nucifera HOM05D005305 ORTHO05D006394 1.2e-06 57.8 104 30.8
TPR.G24442 Trifolium pratense HOM05D002727 ORTHO05D002856 1.2e-06 57.8 104 34.6
Aqoxy1G00996 Aquilegia oxysepala HOM05D002727 ORTHO05D002856 1.6e-06 57.4 92 38.0
CDE04G0093 Ceratophyllum demersum HOM05D002727 ORTHO05D002856 1.6e-06 57.4 140 32.1
Ca_11101_v3 Cicer arietinum L. HOM05D002727 ORTHO05D002856 1.6e-06 57.4 101 33.7
Medtr1g108470 Medicago truncatula HOM05D002727 ORTHO05D002856 1.6e-06 57.4 101 33.7
QL01p002083 Quercus lobata HOM05D002727 ORTHO05D002856 1.6e-06 57.4 126 27.0
Sp1g13500 Schrenkiella parvula HOM05D005305 ORTHO05D006394 1.6e-06 57.4 129 31.8
Aqoxy7G03258 Aquilegia oxysepala HOM05D005423 ORTHO05D006223 2.1e-06 57.0 65 46.2
CsaV3_5G028530 Cucumis sativus L. HOM05D002727 ORTHO05D002856 2.1e-06 57.0 95 32.6
MD03G1107500 Malus domestica HOM05D002727 ORTHO05D002856 2.1e-06 57.0 102 34.3
Lj2g0009169 Lotus japonicus HOM05D002727 ORTHO05D002856 2.7e-06 56.6 89 39.3
Manes.17G075200 Manihot esculenta HOM05D002727 ORTHO05D002856 2.7e-06 56.6 105 30.5
PGR042G1067 Punica granatum HOM05D007205 ORTHO05D009175 2.7e-06 56.6 115 31.3
Rhsim01G0019500 Rhododendron simsii HOM05D002727 ORTHO05D002856 2.7e-06 56.6 92 35.9
Aqoxy6G00392 Aquilegia oxysepala HOM05D005305 ORTHO05D006394 3.5e-06 56.2 185 27.6
Glyma.10G265700 Glycine max HOM05D002727 ORTHO05D002856 3.5e-06 56.2 72 37.5
Lsat_1_v5_gn_7_79481 Lactuca sativa HOM05D005305 ORTHO05D006394 3.5e-06 56.2 143 30.8
SalBow5G2993 Salvia bowleyana HOM05D005305 ORTHO05D006394 3.5e-06 56.2 161 27.3
TAR624G0561 Trochodendron aralioides HOM05D005305 ORTHO05D006394 3.5e-06 56.2 143 27.3
ATR0012G059 Amborella trichopoda HOM05D002727 ORTHO05D002856 4.6e-06 55.8 110 31.8
AT1G15190 Arabidopsis thaliana HOM05D005305 ORTHO05D006394 4.6e-06 55.8 108 34.3
MELO3C005314.2 Cucumis melo HOM05D002727 ORTHO05D002856 4.6e-06 55.8 95 32.6
Hma1.2p1_0951F.1_g240760 Hydrangea macrophylla HOM05D002727 ORTHO05D002856 4.6e-06 55.8 156 27.6
Hma1.2p1_2764F.1_g328145 Hydrangea macrophylla HOM05D002727 ORTHO05D002856 4.6e-06 55.8 156 27.6
arahy.Tifrunner.gnm1.ann1.PT8N4B Arachis hypogaea HOM05D002727 ORTHO05D002856 6.0e-06 55.5 73 37.0
Duzib251G0433 Durio zibethinus HOM05D002727 ORTHO05D002856 6.0e-06 55.5 104 33.7
Psat2g129760 Pisum sativum HOM05D002727 ORTHO05D002856 6.0e-06 55.5 104 34.6
Thecc.02G279300 Theobroma cacao HOM05D002727 ORTHO05D002856 6.0e-06 55.5 129 29.5
CARHR015700 Cardamine hirsuta HOM05D005305 ORTHO05D006394 7.9e-06 55.1 78 37.2
Ciclev10017720m.g Citrus clementina HOM05D002727 ORTHO05D002856 7.9e-06 55.1 126 26.2
Eucgr.A01741 Eucalyptus grandis HOM05D007205 ORTHO05D009175 7.9e-06 55.1 181 27.1
Glyma.09G119800 Glycine max HOM05D002727 ORTHO05D002856 7.9e-06 55.1 131 29.0
TAR381G1643 Trochodendron aralioides HOM05D005305 ORTHO05D006394 7.9e-06 55.1 78 34.6


User provided reference genes

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