Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G0842 Ceratophyllum demersum HOM05D003440 ORTHO05D003953 1.2e-73 279.6 127 100.0
CDE12G0097 Ceratophyllum demersum HOM05D003440 ORTHO05D003953 4.2e-47 191.4 103 81.6
CDE04G0952 Ceratophyllum demersum HOM05D003440 ORTHO05D003953 3.8e-24 115.2 91 51.6
Aqoxy7G03194 Aquilegia oxysepala HOM05D003440 ORTHO05D003953 3.0e-13 79.0 101 40.6
GSVIVG01029833001 Vitis vinifera HOM05D003440 ORTHO05D003953 3.9e-13 78.6 85 41.2
ATR1127G118 Amborella trichopoda HOM05D003440 ORTHO05D003953 5.1e-13 78.2 58 55.2
HanXRQChr11g0329301 Helianthus annuus HOM05D003440 ORTHO05D003953 6.7e-13 77.8 75 46.7
QL07p030310 Quercus lobata HOM05D003440 ORTHO05D003953 1.1e-12 77.0 56 53.6
QL07p030704 Quercus lobata HOM05D003440 ORTHO05D003953 1.9e-12 76.3 56 53.6
Atru.chr8.26 Acer truncatum HOM05D003440 ORTHO05D003953 3.3e-12 75.5 89 41.6
MBI15_g11745_MAGBIO Magnolia biondii HOM05D003440 ORTHO05D003953 4.3e-12 75.1 80 41.2
Nn5g26738 Nelumbo nucifera HOM05D003440 ORTHO05D003953 4.3e-12 75.1 105 38.1
Aqoxy7G03195 Aquilegia oxysepala HOM05D003440 ORTHO05D003953 7.4e-12 74.3 103 36.9
HanXRQChr11g0329311 Helianthus annuus HOM05D003440 ORTHO05D003953 7.4e-12 74.3 55 56.4
ATR1127G125 Amborella trichopoda HOM05D003440 ORTHO05D003953 9.7e-12 73.9 72 45.8
Potri.016G143400 Populus trichocarpa HOM05D003440 ORTHO05D003953 2.2e-11 72.8 81 43.2
Dinv16919 Davidia involucrata HOM05D003440 ORTHO05D003953 2.8e-11 72.4 59 52.5
Thecc.04G064200 Theobroma cacao HOM05D003440 ORTHO05D003953 8.2e-11 70.9 76 42.1
Ciclev10013742m.g Citrus clementina HOM05D003440 ORTHO05D003953 1.4e-10 70.1 86 40.7
Aqoxy2G00611 Aquilegia oxysepala HOM05D003440 ORTHO05D003953 1.8e-10 69.7 79 40.5
FAN02G2454 Fragaria x ananassa HOM05D003440 ORTHO05D003953 1.8e-10 69.7 83 44.6
CSS0039616 Camellia sinensis var. sinensis HOM05D003440 ORTHO05D003953 2.4e-10 69.3 55 50.9
Potri.006G113700 Populus trichocarpa HOM05D003440 ORTHO05D003953 3.1e-10 68.9 84 40.5
TWI74G0415 Tripterygium wilfordii HOM05D003440 ORTHO05D003953 3.1e-10 68.9 81 40.7
TAR633G0436 Trochodendron aralioides HOM05D003440 ORTHO05D003953 3.1e-10 68.9 73 43.8
Gohir.A02G000800 Gossypium hirsutum HOM05D003440 ORTHO05D003953 5.3e-10 68.2 99 35.4
Gohir.D02G001100 Gossypium hirsutum HOM05D003440 ORTHO05D003953 5.3e-10 68.2 99 35.4
Gorai.005G001600 Gossypium raimondii HOM05D003440 ORTHO05D003953 5.3e-10 68.2 99 35.4
Lsat_1_v5_gn_8_108200 Lactuca sativa HOM05D003440 ORTHO05D003953 5.3e-10 68.2 78 41.0
MD04G1180500 Malus domestica HOM05D003440 ORTHO05D003953 5.3e-10 68.2 59 47.5
Os12g0121000 Oryza sativa ssp. japonica HOM05D003440 ORTHO05D003953 5.3e-10 68.2 88 36.4
Sp6g41240 Schrenkiella parvula HOM05D003440 ORTHO05D003953 5.3e-10 68.2 84 40.5
Eucgr.K01315 Eucalyptus grandis HOM05D003440 ORTHO05D003953 6.9e-10 67.8 69 43.5
SEGI_09135 Sequoiadendron giganteum HOM05D003440 ORTHO05D003953 6.9e-10 67.8 57 49.1
Carub.0024s0002 Capsella rubella HOM05D003440 ORTHO05D003953 9.1e-10 67.4 101 37.6
PSO384G1065 Papaver somniferum HOM05D003440 ORTHO05D003953 9.1e-10 67.4 56 48.2
CSS0018403 Camellia sinensis var. sinensis HOM05D003440 ORTHO05D003953 1.5e-09 66.6 54 50.0
AT5G01015 Arabidopsis thaliana HOM05D003440 ORTHO05D003953 2.0e-09 66.2 102 35.3
PGR004G0491 Punica granatum HOM05D003440 ORTHO05D003953 2.0e-09 66.2 55 49.1
Sabra06G0088600 Salix brachista HOM05D003440 ORTHO05D003953 3.4e-09 65.5 55 47.3
AL6G10020 Arabidopsis lyrata HOM05D003440 ORTHO05D003953 4.5e-09 65.1 98 35.7
Cpa.g.sc0.29 Carica papaya HOM05D003440 ORTHO05D003953 4.5e-09 65.1 77 36.4
Lsat_1_v5_gn_5_153521 Lactuca sativa HOM05D003440 ORTHO05D003953 4.5e-09 65.1 68 45.6
Nn1g09786 Nelumbo nucifera HOM05D003440 ORTHO05D003953 4.5e-09 65.1 71 42.3
Os11g0121300 Oryza sativa ssp. japonica HOM05D003440 ORTHO05D003953 4.5e-09 65.1 80 40.0
Prupe.6G300400 Prunus persica HOM05D003440 ORTHO05D003953 4.5e-09 65.1 58 46.6
CARHR056980 Cardamine hirsuta HOM05D003440 ORTHO05D003953 5.9e-09 64.7 82 36.6
HanXRQChr01g0000641 Helianthus annuus HOM05D003440 ORTHO05D003953 7.7e-09 64.3 55 52.7
COL.COLO4_20128 Corchorus olitorius HOM05D003440 ORTHO05D003953 1.0e-08 63.9 79 38.0
Haze_21225 Corylus avellana HOM05D003440 ORTHO05D003953 1.0e-08 63.9 95 35.8
SalBow6G6125 Salvia bowleyana HOM05D003440 ORTHO05D003953 1.0e-08 63.9 54 48.1
Cfa016982 Carpinus fangiana HOM05D003440 ORTHO05D003953 1.3e-08 63.5 77 39.0
Os11g0463700 Oryza sativa ssp. japonica HOM05D003440 ORTHO05D003953 1.3e-08 63.5 54 46.3
SGA_v2.0_scaffold122G33174 Striga asiatica HOM05D003440 ORTHO05D003953 1.3e-08 63.5 87 35.6
Aa31LG5G11290 Aethionema arabicum HOM05D000046 ORTHO05D000457 2.2e-08 62.8 56 44.6
Gorai.010G138900 Gossypium raimondii HOM05D003440 ORTHO05D003953 2.9e-08 62.4 54 46.3
MBI07_g09261_MAGBIO Magnolia biondii HOM05D003440 ORTHO05D003953 2.9e-08 62.4 54 46.3
SalBow1G3495 Salvia bowleyana HOM05D003440 ORTHO05D003953 2.9e-08 62.4 54 46.3
SEGI_04004 Sequoiadendron giganteum HOM05D003440 ORTHO05D003953 2.9e-08 62.4 54 46.3
Zm00001eb169930 Zea mays HOM05D003440 ORTHO05D003953 2.9e-08 62.4 54 44.4
ClCG03G010850 Citrullus lanatus HOM05D003440 ORTHO05D003953 3.8e-08 62.0 54 46.3
CsaV3_1G044590 Cucumis sativus L. HOM05D003440 ORTHO05D003953 3.8e-08 62.0 54 46.3
Dinv29111 Davidia involucrata HOM05D003440 ORTHO05D003953 3.8e-08 62.0 97 36.1
Migut.F02138 Erythranthe guttata HOM05D003440 ORTHO05D003953 3.8e-08 62.0 54 46.3
Sed0009834 Sechium edule HOM05D003440 ORTHO05D003953 3.8e-08 62.0 54 46.3
Zm00001eb093770 Zea mays HOM05D003440 ORTHO05D003953 3.8e-08 62.0 104 33.7
AT1G65295 Arabidopsis thaliana HOM05D003440 ORTHO05D003953 5.0e-08 61.6 84 34.5
arahy.Tifrunner.gnm1.ann1.7Z41ZG Arachis hypogaea HOM05D003440 ORTHO05D003953 5.0e-08 61.6 54 46.3
arahy.Tifrunner.gnm1.ann1.FBZP9J Arachis hypogaea HOM05D003440 ORTHO05D003953 5.0e-08 61.6 54 46.3
arahy.Tifrunner.gnm1.ann1.UVCE5Y Arachis hypogaea HOM05D003440 ORTHO05D003953 5.0e-08 61.6 54 46.3
BcaC03g14694 Brassica carinata HOM05D003440 ORTHO05D003953 5.0e-08 61.6 93 34.4
C02p21330 Brassica napus HOM05D003440 ORTHO05D003953 5.0e-08 61.6 93 34.4
BolC2t08270H Brassica oleracea HOM05D003440 ORTHO05D003953 5.0e-08 61.6 93 34.4
Gohir.D13G092000 Gossypium hirsutum HOM05D003440 ORTHO05D003953 5.0e-08 61.6 54 46.3
Oeu040492.1 Olea europaea HOM05D003440 ORTHO05D003953 5.0e-08 61.6 54 46.3
Potri.019G053100 Populus trichocarpa HOM05D003440 ORTHO05D003953 5.0e-08 61.6 75 36.0
QL01p048843 Quercus lobata HOM05D003440 ORTHO05D003953 5.0e-08 61.6 87 35.6
QL07p030389 Quercus lobata HOM05D003440 ORTHO05D003953 5.0e-08 61.6 96 34.4
TPR.G14664 Trifolium pratense HOM05D003440 ORTHO05D003953 5.0e-08 61.6 55 49.1
A02p13170 Brassica napus HOM05D003440 ORTHO05D003953 6.5e-08 61.2 93 34.4
A07p32790 Brassica napus HOM05D003440 ORTHO05D003953 6.5e-08 61.2 55 43.6
C06p39000 Brassica napus HOM05D003440 ORTHO05D003953 6.5e-08 61.2 55 43.6
BolC6t38992H Brassica oleracea HOM05D003440 ORTHO05D003953 6.5e-08 61.2 55 43.6
BraA02t06373Z Brassica rapa HOM05D003440 ORTHO05D003953 6.5e-08 61.2 93 34.4
BraA07t30906Z Brassica rapa HOM05D003440 ORTHO05D003953 6.5e-08 61.2 55 43.6
Sed0001280 Sechium edule HOM05D003440 ORTHO05D003953 6.5e-08 61.2 58 41.4
ATR0561G171 Amborella trichopoda HOM05D003440 ORTHO05D003953 8.5e-08 60.8 52 46.2
CANSAT25G3389 Cannabis sativa HOM05D003440 ORTHO05D003953 8.5e-08 60.8 84 39.3
Ciclev10013140m.g Citrus clementina HOM05D003440 ORTHO05D003953 8.5e-08 60.8 54 46.3
QL04p042289 Quercus lobata HOM05D003440 ORTHO05D003953 8.5e-08 60.8 87 35.6
Dinv06976 Davidia involucrata HOM05D003440 ORTHO05D003953 1.1e-07 60.5 54 44.4
MBI11_g07420_MAGBIO Magnolia biondii HOM05D003440 ORTHO05D003953 1.1e-07 60.5 52 44.2
Rhsim09G0129600 Rhododendron simsii HOM05D003440 ORTHO05D003953 1.1e-07 60.5 58 43.1
vmacro10410 Vaccinium macrocarpon HOM05D003440 ORTHO05D003953 1.1e-07 60.5 58 43.1
AL2G20420 Arabidopsis lyrata HOM05D003440 ORTHO05D003953 1.4e-07 60.1 54 44.4
BcaB05g24106 Brassica carinata HOM05D003440 ORTHO05D003953 1.4e-07 60.1 54 42.6
Carub.0002s1098 Capsella rubella HOM05D003440 ORTHO05D003953 1.4e-07 60.1 54 44.4
COL.COLO4_27388 Corchorus olitorius HOM05D003440 ORTHO05D003953 1.4e-07 60.1 97 35.1
Duzib106G1272 Durio zibethinus HOM05D003440 ORTHO05D003953 1.4e-07 60.1 57 43.9
Thhalv10019335m.g Eutrema salsugineum HOM05D003440 ORTHO05D003953 1.4e-07 60.1 54 44.4
PGR031G2316 Punica granatum HOM05D003440 ORTHO05D003953 1.4e-07 60.1 54 44.4
Sed0018617 Sechium edule HOM05D003440 ORTHO05D003953 1.4e-07 60.1 57 42.1
Cpa.g.sc39.4 Carica papaya HOM05D003440 ORTHO05D003953 1.9e-07 59.7 54 44.4
ClCG11G010770 Citrullus lanatus HOM05D003440 ORTHO05D003953 1.9e-07 59.7 57 42.1
MELO3C008739.2 Cucumis melo HOM05D003440 ORTHO05D003953 1.9e-07 59.7 57 42.1
CsaV3_2G009650 Cucumis sativus L. HOM05D003440 ORTHO05D003953 1.9e-07 59.7 57 42.1
Gohir.A05G391000 Gossypium hirsutum HOM05D003440 ORTHO05D003953 1.9e-07 59.7 57 43.9
Gohir.A13G154500 Gossypium hirsutum HOM05D003440 ORTHO05D003953 1.9e-07 59.7 54 44.4
Gohir.D04G026200 Gossypium hirsutum HOM05D003440 ORTHO05D003953 1.9e-07 59.7 57 43.9
Gohir.D13G159200 Gossypium hirsutum HOM05D003440 ORTHO05D003953 1.9e-07 59.7 54 44.4
Gorai.012G028800 Gossypium raimondii HOM05D003440 ORTHO05D003953 1.9e-07 59.7 57 43.9
Gorai.013G179900 Gossypium raimondii HOM05D003440 ORTHO05D003953 1.9e-07 59.7 54 44.4
Nitab4.5_0001653g0080 Nicotiana tabacum HOM05D003440 ORTHO05D003953 1.9e-07 59.7 54 44.4
Nitab4.5_0012961g0010 Nicotiana tabacum HOM05D003440 ORTHO05D003953 1.9e-07 59.7 54 44.4
Sabra19G0062600 Salix brachista HOM05D003440 ORTHO05D003953 1.9e-07 59.7 54 44.4
Solyc11g008910.2 Solanum lycopersicum HOM05D003440 ORTHO05D003953 1.9e-07 59.7 54 44.4
Sopen11g004700 Solanum pennellii HOM05D003440 ORTHO05D003953 1.9e-07 59.7 54 44.4
PGSC0003DMG400016235 Solanum tuberosum HOM05D003440 ORTHO05D003953 1.9e-07 59.7 54 44.4
CSS0029757 Camellia sinensis var. sinensis HOM05D003440 ORTHO05D003953 2.5e-07 59.3 54 44.4
CANSAT54G0566 Cannabis sativa HOM05D003440 ORTHO05D003953 2.5e-07 59.3 54 44.4
DCAR_007995 Daucus carota HOM05D003440 ORTHO05D003953 2.5e-07 59.3 54 42.6
FvH4_6g00580 Fragaria vesca HOM05D003440 ORTHO05D003953 2.5e-07 59.3 54 44.4
FvH4_6g09130 Fragaria vesca HOM05D003440 ORTHO05D003953 2.5e-07 59.3 95 37.9
FAN14G4320 Fragaria x ananassa HOM05D003440 ORTHO05D003953 2.5e-07 59.3 95 37.9
Hma1.2p1_0123F.1_g057890 Hydrangea macrophylla HOM05D003440 ORTHO05D003953 2.5e-07 59.3 54 44.4
Lj1g0010972 Lotus japonicus HOM05D003440 ORTHO05D003953 2.5e-07 59.3 54 44.4
MD04G1244000 Malus domestica HOM05D003440 ORTHO05D003953 2.5e-07 59.3 54 44.4
Medtr7g079830 Medicago truncatula HOM05D003440 ORTHO05D003953 2.5e-07 59.3 52 46.2
Phvul.007G118600 Phaseolus vulgaris HOM05D003440 ORTHO05D003953 2.5e-07 59.3 54 44.4
Prupe.6G360500 Prunus persica HOM05D003440 ORTHO05D003953 2.5e-07 59.3 54 44.4
QL07p030748 Quercus lobata HOM05D003440 ORTHO05D003953 2.5e-07 59.3 96 33.3
THA.LOC104805696 Tarenaya hassleriana HOM05D003440 ORTHO05D003953 2.5e-07 59.3 54 44.4
THA.LOC104821944 Tarenaya hassleriana HOM05D003440 ORTHO05D003953 2.5e-07 59.3 89 34.8
Thecc.05G200800 Theobroma cacao HOM05D003440 ORTHO05D003953 2.5e-07 59.3 54 44.4
GSVIVG01019121001 Vitis vinifera HOM05D003440 ORTHO05D003953 2.5e-07 59.3 54 44.4
Actinidia34765 Actinidia chinensis HOM05D003440 ORTHO05D003953 3.2e-07 58.9 54 42.6
BcaNung05535 Brassica carinata HOM05D003440 ORTHO05D003953 3.2e-07 58.9 93 34.4
CDE05G2380 Ceratophyllum demersum HOM05D003440 ORTHO05D003953 3.2e-07 58.9 54 44.4
CDE05G3613 Ceratophyllum demersum HOM05D003440 ORTHO05D003953 3.2e-07 58.9 54 44.4
Duzib128G1849 Durio zibethinus HOM05D003440 ORTHO05D003953 3.2e-07 58.9 54 44.4
FAN02G4240 Fragaria x ananassa HOM05D003440 ORTHO05D003953 3.2e-07 58.9 54 44.4
Glyma.09G251300 Glycine max HOM05D003440 ORTHO05D003953 3.2e-07 58.9 54 44.4
Glyma.18G241200 Glycine max HOM05D003440 ORTHO05D003953 3.2e-07 58.9 54 44.4
Glyma.20G219200 Glycine max HOM05D003440 ORTHO05D003953 3.2e-07 58.9 54 44.4
Lalb_Chr03g0038421 Lupinus albus HOM05D003440 ORTHO05D003953 3.2e-07 58.9 54 44.4
Manes.09G184900 Manihot esculenta HOM05D003440 ORTHO05D003953 3.2e-07 58.9 54 44.4
RcHm_v2.0_Chr3g0447971 Rosa chinensis HOM05D003440 ORTHO05D003953 3.2e-07 58.9 54 44.4
Eucgr.H01385 Eucalyptus grandis HOM05D003440 ORTHO05D003953 4.2e-07 58.5 54 44.4
Lj1g0025945 Lotus japonicus HOM05D003440 ORTHO05D003953 4.2e-07 58.5 54 42.6
Lalb_Chr02g0149431 Lupinus albus HOM05D003440 ORTHO05D003953 4.2e-07 58.5 53 45.3
TPR.G30343 Trifolium pratense HOM05D003440 ORTHO05D003953 4.2e-07 58.5 52 46.2
Glyma.10G170700 Glycine max HOM05D003440 ORTHO05D003953 5.5e-07 58.2 54 44.4
Lalb_Chr19g0127521 Lupinus albus HOM05D003440 ORTHO05D003953 5.5e-07 58.2 54 44.4
Phvul.008G054900 Phaseolus vulgaris HOM05D003440 ORTHO05D003953 5.5e-07 58.2 54 44.4
MD12G1259800 Malus domestica HOM05D003440 ORTHO05D003953 7.2e-07 57.8 52 44.2
Manes.08G104200 Manihot esculenta HOM05D003440 ORTHO05D003953 7.2e-07 57.8 54 42.6
Psat3g103680 Pisum sativum HOM05D003440 ORTHO05D003953 7.2e-07 57.8 52 44.2
MD12G1195900 Malus domestica HOM05D003440 ORTHO05D003953 9.4e-07 57.4 91 36.3
FAN05G4201 Fragaria x ananassa HOM05D003440 ORTHO05D003953 1.2e-06 57.0 92 38.0
Peaxi162Scf00253g00722 Petunia axillaris HOM05D003440 ORTHO05D003953 1.2e-06 57.0 52 44.2
EL10Ac4g09977 Beta vulgaris HOM05D003440 ORTHO05D003953 1.6e-06 56.6 54 42.6
TWI75G0665 Tripterygium wilfordii HOM05D003440 ORTHO05D003953 2.1e-06 56.2 54 40.7
Cc09_g03520 Coffea canephora HOM05D003440 ORTHO05D003953 2.7e-06 55.8 54 42.6
Thhalv10015102m.g Eutrema salsugineum HOM05D003440 ORTHO05D003953 3.6e-06 55.5 84 36.9
Migut.F01880 Erythranthe guttata HOM05D003440 ORTHO05D003953 6.1e-06 54.7 58 39.7
RcHm_v2.0_Chr3g0459341 Rosa chinensis HOM05D003440 ORTHO05D003953 7.9e-06 54.3 87 35.6
TWI36G0275 Tripterygium wilfordii HOM05D003440 ORTHO05D003953 7.9e-06 54.3 54 38.9


User provided reference genes

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