Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G0809 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 8.2e-219 763.5 392 100.0
MBI11_g09068_MAGBIO Magnolia biondii HOM05D005438 ORTHO05D006744 1.1e-95 354.4 350 59.4
TAR374G1319 Trochodendron aralioides HOM05D005438 ORTHO05D006744 6.3e-94 348.6 371 55.5
CiPaw.11G129800 Carya illinoinensis HOM05D005438 ORTHO05D006744 4.5e-92 342.4 366 54.4
Actinidia10609 Actinidia chinensis HOM05D005438 ORTHO05D006744 1.0e-91 341.3 381 54.3
Aqoxy7G00195 Aquilegia oxysepala HOM05D005438 ORTHO05D006744 1.3e-91 340.9 376 54.5
Nn1g01673 Nelumbo nucifera HOM05D005438 ORTHO05D006744 5.0e-91 339.0 395 50.9
Gohir.D03G078500 Gossypium hirsutum HOM05D005438 ORTHO05D006744 1.1e-90 337.8 369 53.9
Thecc.03G286500 Theobroma cacao HOM05D005438 ORTHO05D006744 1.1e-90 337.8 364 55.2
Rhsim02G0235700 Rhododendron simsii HOM05D005438 ORTHO05D006744 1.9e-90 337.0 372 54.3
ATR0661G541 Amborella trichopoda HOM05D005438 ORTHO05D006744 3.2e-90 336.3 394 50.0
Dinv37597 Davidia involucrata HOM05D005438 ORTHO05D006744 3.2e-90 336.3 373 53.9
GSVIVG01019417001 Vitis vinifera HOM05D005438 ORTHO05D006744 3.2e-90 336.3 369 54.5
vmacro11410 Vaccinium macrocarpon HOM05D005438 ORTHO05D006744 4.2e-90 335.9 361 55.7
ClCG01G002320 Citrullus lanatus HOM05D005438 ORTHO05D006744 5.5e-90 335.5 351 53.3
COL.COLO4_08362 Corchorus olitorius HOM05D005438 ORTHO05D006744 7.2e-90 335.1 364 54.1
MELO3C005715.2 Cucumis melo HOM05D005438 ORTHO05D006744 7.2e-90 335.1 370 52.7
Duzib084G0802 Durio zibethinus HOM05D005438 ORTHO05D006744 1.2e-89 334.3 365 52.9
CsaV3_5G002390 Cucumis sativus L. HOM05D005438 ORTHO05D006744 1.6e-89 334.0 370 52.7
TWI60G1446 Tripterygium wilfordii HOM05D005438 ORTHO05D006744 2.1e-89 333.6 374 53.7
CSS0046697 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 2.7e-89 333.2 375 54.9
Gohir.A02G105300 Gossypium hirsutum HOM05D005438 ORTHO05D006744 3.6e-89 332.8 365 53.7
arahy.Tifrunner.gnm1.ann1.I29YTG Arachis hypogaea HOM05D005438 ORTHO05D006744 6.1e-89 332.0 366 52.5
Gorai.003G085600 Gossypium raimondii HOM05D005438 ORTHO05D006744 1.4e-88 330.9 366 54.1
Ca_10950_v3 Cicer arietinum L. HOM05D005438 ORTHO05D006744 3.0e-88 329.7 370 53.5
Atru.chr9.2115 Acer truncatum HOM05D005438 ORTHO05D006744 8.8e-88 328.2 369 52.3
arahy.Tifrunner.gnm1.ann1.Y7QUAU Arachis hypogaea HOM05D005438 ORTHO05D006744 2.6e-87 326.6 366 52.2
Sed0027839 Sechium edule HOM05D005438 ORTHO05D006744 5.7e-87 325.5 372 53.2
QL12p031793 Quercus lobata HOM05D005438 ORTHO05D006744 7.4e-87 325.1 406 49.5
Eucgr.L02379 Eucalyptus grandis HOM05D005438 ORTHO05D006744 9.7e-87 324.7 369 54.2
Eucgr.D01812 Eucalyptus grandis HOM05D005438 ORTHO05D006744 2.8e-86 323.2 369 54.2
Phvul.002G293100 Phaseolus vulgaris HOM05D005438 ORTHO05D006744 3.7e-86 322.8 369 51.8
VMungo0251G0328 Vigna mungo HOM05D005438 ORTHO05D006744 3.7e-86 322.8 369 52.3
Ciclev10020644m.g Citrus clementina HOM05D005438 ORTHO05D006744 6.3e-86 322.0 369 53.1
CAN.G532.38 Capsicum annuum HOM05D005438 ORTHO05D006744 4.1e-85 319.3 366 50.5
Duzib205G0010 Durio zibethinus HOM05D005438 ORTHO05D006744 1.2e-84 317.8 365 52.1
PGSC0003DMG400012320 Solanum tuberosum HOM05D005438 ORTHO05D006744 5.9e-84 315.5 366 51.4
Atru.BG.199.p Acer truncatum HOM05D005438 ORTHO05D006744 7.7e-84 315.1 346 54.3
Glyma.08G018100 Glycine max HOM05D005438 ORTHO05D006744 1.3e-83 314.3 367 51.8
Glyma.05G211800 Glycine max HOM05D005438 ORTHO05D006744 2.9e-83 313.2 367 51.5
Psat7g029680 Pisum sativum HOM05D005438 ORTHO05D006744 2.9e-83 313.2 369 49.9
Zm00001eb001860 Zea mays HOM05D005438 ORTHO05D006744 2.9e-83 313.2 385 50.1
Peaxi162Scf00074g01737 Petunia axillaris HOM05D005438 ORTHO05D006744 5.0e-83 312.4 368 50.8
MD14G1111900 Malus domestica HOM05D005438 ORTHO05D006744 6.5e-83 312.0 368 50.8
Os03g0125300 Oryza sativa ssp. japonica HOM05D005438 ORTHO05D006744 6.5e-83 312.0 391 49.9
TPR.G12953 Trifolium pratense HOM05D005438 ORTHO05D006744 8.5e-83 311.6 418 46.9
Nitab4.5_0003015g0090 Nicotiana tabacum HOM05D005438 ORTHO05D006744 1.9e-82 310.5 369 49.9
RcHm_v2.0_Chr7g0196591 Rosa chinensis HOM05D005438 ORTHO05D006744 2.5e-82 310.1 374 50.0
DCAR_004611 Daucus carota HOM05D005438 ORTHO05D006744 3.2e-82 309.7 352 53.4
Lalb_Chr05g0224491 Lupinus albus HOM05D005438 ORTHO05D006744 3.2e-82 309.7 380 50.8
Lj4g0011941 Lotus japonicus HOM05D005438 ORTHO05D006744 4.2e-82 309.3 372 51.3
Nitab4.5_0007906g0070 Nicotiana tabacum HOM05D005438 ORTHO05D006744 4.2e-82 309.3 366 51.1
Cc08_g15250 Coffea canephora HOM05D005438 ORTHO05D006744 5.5e-82 308.9 379 51.2
FAN18G2027 Fragaria x ananassa HOM05D005438 ORTHO05D006744 5.5e-82 308.9 373 50.1
FvH4_5g03190 Fragaria vesca HOM05D005438 ORTHO05D006744 7.2e-82 308.5 373 50.1
Prupe.5G106500 Prunus persica HOM05D005438 ORTHO05D006744 9.4e-82 308.1 366 51.1
Solyc08g081580.4 Solanum lycopersicum HOM05D005438 ORTHO05D006744 9.4e-82 308.1 361 51.0
PSO017G3503 Papaver somniferum HOM05D005438 ORTHO05D006744 1.2e-81 307.8 389 48.1
PSO266G0069 Papaver somniferum HOM05D005438 ORTHO05D006744 1.2e-81 307.8 387 48.8
Gohir.D12G233900 Gossypium hirsutum HOM05D005438 ORTHO05D006744 2.1e-81 307.0 367 52.3
Medtr8g098940 Medicago truncatula HOM05D005438 ORTHO05D006744 2.1e-81 307.0 370 51.4
FAN13G0364 Fragaria x ananassa HOM05D005438 ORTHO05D006744 3.6e-81 306.2 373 49.6
PSO478G3903 Papaver somniferum HOM05D005438 ORTHO05D006744 3.6e-81 306.2 387 48.6
FAN08G1515 Fragaria x ananassa HOM05D005438 ORTHO05D006744 4.7e-81 305.8 373 49.9
Gorai.008G250200 Gossypium raimondii HOM05D005438 ORTHO05D006744 6.1e-81 305.4 365 52.3
Potri.003G132600 Populus trichocarpa HOM05D005438 ORTHO05D006744 6.1e-81 305.4 408 48.0
Sopen08g029890 Solanum pennellii HOM05D005438 ORTHO05D006744 6.1e-81 305.4 364 51.1
ECA233G5263 Erigeron canadensis HOM05D005438 ORTHO05D006744 8.0e-81 305.1 372 52.2
PGR031G2565 Punica granatum HOM05D005438 ORTHO05D006744 8.0e-81 305.1 363 52.1
HPP92_021018 Vanilla planifolia HOM05D005438 ORTHO05D006744 1.8e-80 303.9 366 51.4
CANSAT21G0041 Cannabis sativa HOM05D005438 ORTHO05D006744 2.3e-80 303.5 379 49.3
MD06G1091000 Malus domestica HOM05D005438 ORTHO05D006744 3.0e-80 303.1 342 50.9
AUR62019752 Chenopodium quinoa HOM05D005438 ORTHO05D006744 8.8e-80 301.6 370 48.4
Sabra03G0095000 Salix brachista HOM05D005438 ORTHO05D006744 8.8e-80 301.6 407 47.7
FAN04G0810 Fragaria x ananassa HOM05D005438 ORTHO05D006744 2.0e-79 300.4 377 49.1
Lsat_1_v5_gn_3_8761 Lactuca sativa HOM05D005438 ORTHO05D006744 3.7e-78 296.2 361 51.5
Manes.01G057900 Manihot esculenta HOM05D005438 ORTHO05D006744 1.1e-77 294.7 403 48.6
AUR62010754 Chenopodium quinoa HOM05D005438 ORTHO05D006744 1.4e-77 294.3 369 47.7
HanXRQChr02g0049721 Helianthus annuus HOM05D005438 ORTHO05D006744 1.8e-77 293.9 368 48.9
Hund11433 Selenicereus undatus HOM05D005438 ORTHO05D006744 1.8e-77 293.9 371 48.0
Migut.J01399 Erythranthe guttata HOM05D005438 ORTHO05D006744 3.5e-76 289.7 365 50.1
THA.LOC104817794 Tarenaya hassleriana HOM05D005438 ORTHO05D006744 5.0e-75 285.8 375 49.6
EL10Ac5g12834 Beta vulgaris HOM05D005438 ORTHO05D006744 2.3e-72 276.9 354 48.0
Aa31LG2G1070 Aethionema arabicum HOM05D005438 ORTHO05D006744 5.2e-72 275.8 382 46.6
CSS0015982 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 3.4e-71 273.1 345 51.3
SEGI_20773 Sequoiadendron giganteum HOM05D005438 ORTHO05D006744 4.4e-71 272.7 422 43.4
Thhalv10023525m.g Eutrema salsugineum HOM05D005438 ORTHO05D006744 1.3e-70 271.2 385 47.3
Lj2C178T12 Lonicera japonica HOM05D005438 ORTHO05D006744 1.3e-70 271.2 376 46.0
Ah.12g051920 Amaranthus hybridus HOM05D005438 ORTHO05D006744 6.3e-70 268.9 377 45.9
Gohir.A12G233400 Gossypium hirsutum HOM05D005438 ORTHO05D006744 1.1e-69 268.1 357 48.2
SGA_v2.0_scaffold173G39139 Striga asiatica HOM05D005438 ORTHO05D006744 9.1e-69 265.0 405 46.2
Carub.0002s0086 Capsella rubella HOM05D005438 ORTHO05D006744 4.5e-68 262.7 391 45.8
AL2G11130 Arabidopsis lyrata HOM05D005438 ORTHO05D006744 5.9e-68 262.3 392 45.2
AT1G63980 Arabidopsis thaliana HOM05D005438 ORTHO05D006744 2.3e-67 260.4 393 43.8
CARHR047000 Cardamine hirsuta HOM05D005438 ORTHO05D006744 6.5e-67 258.8 377 48.0
C09p18360 Brassica napus HOM05D005438 ORTHO05D006744 2.5e-66 256.9 406 45.6
BcaC04g22661 Brassica carinata HOM05D005438 ORTHO05D006744 5.5e-66 255.8 406 43.6
C09p16950 Brassica napus HOM05D005438 ORTHO05D006744 2.8e-65 253.4 408 44.6
Migut.A00720 Erythranthe guttata HOM05D005438 ORTHO05D006744 2.8e-65 253.4 374 45.2
A09p14060 Brassica napus HOM05D005438 ORTHO05D006744 3.6e-65 253.1 397 44.1
BcaB07g31422 Brassica carinata HOM05D005438 ORTHO05D006744 4.7e-65 252.7 401 44.6
BcaB07g31532 Brassica carinata HOM05D005438 ORTHO05D006744 8.0e-65 251.9 411 44.3
A09p15160 Brassica napus HOM05D005438 ORTHO05D006744 1.4e-64 251.1 408 42.6
BolC9t54729H Brassica oleracea HOM05D005438 ORTHO05D006744 4.0e-64 249.6 412 42.5
BolC9t54592H Brassica oleracea HOM05D005438 ORTHO05D006744 8.8e-64 248.4 410 43.4
Sp2g00710 Schrenkiella parvula HOM05D005438 ORTHO05D006744 1.2e-63 248.1 410 43.7
HanXRQChr17g0533211 Helianthus annuus HOM05D005438 ORTHO05D006744 1.5e-63 247.7 358 46.6
BraA09t37053Z Brassica rapa HOM05D005438 ORTHO05D006744 2.0e-63 247.3 404 43.8
BraA09t37158Z Brassica rapa HOM05D005438 ORTHO05D006744 7.5e-63 245.4 413 42.4
Sc01g0009850 Simmondsia chinensis HOM05D005438 ORTHO05D006744 2.7e-60 236.9 311 48.6
unitig_32.g10979 Utricularia gibba HOM05D005438 ORTHO05D006744 4.5e-60 236.1 320 47.2
Haze_08758 Corylus avellana HOM05D005438 ORTHO05D006744 6.6e-43 179.1 289 41.5
Mapoly0090s0083 Marchantia polymorpha HOM05D005438 ORTHO05D006744 6.6e-43 179.1 326 38.7
Pp3c2_28530 Physcomitrium patens HOM05D005438 ORTHO05D006744 8.1e-41 172.2 406 36.0
Lsat_1_v5_gn_1_49360 Lactuca sativa HOM05D005438 ORTHO05D006744 3.1e-40 170.2 201 51.7
Lsat_1_v5_gn_5_103140 Lactuca sativa HOM05D005438 ORTHO05D006744 3.1e-40 170.2 201 51.7
Lsat_1_v5_gn_9_38321 Lactuca sativa HOM05D005438 ORTHO05D006744 3.1e-40 170.2 201 51.7
SMO134G0098 Selaginella moellendorffii HOM05D005438 ORTHO05D006744 3.4e-39 166.8 366 35.5
Actinidia28345 Actinidia chinensis HOM05D005438 ORTHO05D006744 3.5e-36 156.8 352 38.1
CDE12G0222 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 5.6e-34 149.4 96 80.2
Pp3c7_27020 Physcomitrium patens HOM05D005438 ORTHO05D006744 5.6e-34 149.4 426 33.1
Cpa.g.sc631.4 Carica papaya HOM05D005438 ORTHO05D006744 1.7e-30 137.9 90 72.2
SHI31900 Sapria himalayana HOM05D005438 ORTHO05D006744 2.2e-30 137.5 289 38.1
CSS0040427 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 1.4e-29 134.8 86 73.3
BcaC04g22519 Brassica carinata HOM05D005438 ORTHO05D006744 2.4e-29 134.0 263 38.4
AagrBONN_evm.TU.Sc2ySwM_344.4712 Anthoceros agrestis HOM05D005438 ORTHO05D006744 3.2e-29 133.7 531 28.4
ATR0661G444 Amborella trichopoda HOM05D005438 ORTHO05D006744 1.8e-24 117.9 191 39.8
CBR_g35011 Chara braunii HOM05D005438 ORTHO05D006744 5.2e-24 116.3 351 31.3
Cpa.g.c39085 Carica papaya HOM05D005438 ORTHO05D006744 7.6e-23 112.5 169 47.3
BcaNung05361 Brassica carinata HOM05D005438 ORTHO05D006744 7.1e-21 105.9 196 38.8
Cre07.g347300 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D021338 6.4e-14 82.8 368 25.0
Cre07.g347400 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D006744 6.4e-14 82.8 368 25.0
HanXRQChr16g0521071 Helianthus annuus HOM05D005438 ORTHO05D006744 3.5e-12 77.0 45 80.0
ECA246G3112 Erigeron canadensis HOM05D005438 ORTHO05D006744 5.1e-11 73.2 98 46.9
Cre01.g054000 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D006744 9.0e-08 62.4 45 64.4


User provided reference genes

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