Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G0746 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 3.1e-41 171.4 88 100.0
CDE02G4418 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 2.1e-34 148.7 88 86.4
TPR.G15111 Trifolium pratense HOM05D007429 ORTHO05D003505 1.9e-14 82.4 92 55.4
Thecc.09G045900 Theobroma cacao HOM05D007429 ORTHO05D003505 3.2e-14 81.6 96 56.2
EL10Ac2g04004 Beta vulgaris HOM05D007429 ORTHO05D003505 9.4e-14 80.1 93 49.5
Sabra06G0186000 Salix brachista HOM05D007429 ORTHO05D003505 9.4e-14 80.1 94 54.3
Eucgr.C00555 Eucalyptus grandis HOM05D007429 ORTHO05D003505 1.6e-13 79.3 94 56.4
Eucgr.C00601 Eucalyptus grandis HOM05D007429 ORTHO05D003505 1.6e-13 79.3 94 56.4
Gorai.009G049400 Gossypium raimondii HOM05D007429 ORTHO05D003505 1.6e-13 79.3 95 54.7
CsaV3_3G048540 Cucumis sativus L. HOM05D007429 ORTHO05D003505 2.1e-13 79.0 95 53.7
CSS0002972 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 2.7e-13 78.6 92 50.0
Potri.006G237800 Populus trichocarpa HOM05D007429 ORTHO05D003505 2.7e-13 78.6 94 53.2
Atru.chr7.2081 Acer truncatum HOM05D007429 ORTHO05D003505 3.6e-13 78.2 98 54.1
Prupe.1G447500 Prunus persica HOM05D007429 ORTHO05D003505 3.6e-13 78.2 83 60.2
Sp6g31990 Schrenkiella parvula HOM05D007429 ORTHO05D003505 3.6e-13 78.2 95 54.7
Aa31LG3G15560 Aethionema arabicum HOM05D007429 ORTHO05D003505 4.6e-13 77.8 94 55.3
MELO3C003465.2 Cucumis melo HOM05D007429 ORTHO05D003505 6.1e-13 77.4 95 52.6
Duzib187G1405 Durio zibethinus HOM05D007429 ORTHO05D003505 6.1e-13 77.4 94 53.2
Glyma.06G086300 Glycine max HOM05D007429 ORTHO05D003505 6.1e-13 77.4 94 55.3
Manes.16G075000 Manihot esculenta HOM05D007429 ORTHO05D003505 6.1e-13 77.4 95 50.5
BcaC03g13383 Brassica carinata HOM05D007429 ORTHO05D003505 1.0e-12 76.6 95 54.7
A02p01120 Brassica napus HOM05D007429 ORTHO05D003505 1.0e-12 76.6 95 54.7
C02p05300 Brassica napus HOM05D007429 ORTHO05D003505 1.0e-12 76.6 95 54.7
BolC2t06478H Brassica oleracea HOM05D007429 ORTHO05D003505 1.0e-12 76.6 95 54.7
BraA02t05091Z Brassica rapa HOM05D007429 ORTHO05D003505 1.0e-12 76.6 95 54.7
ClCG11G015140 Citrullus lanatus HOM05D007429 ORTHO05D003505 1.0e-12 76.6 95 52.6
Lj1g0025254 Lotus japonicus HOM05D007429 ORTHO05D003505 1.0e-12 76.6 94 52.1
MD08G1113300 Malus domestica HOM05D007429 ORTHO05D003505 1.0e-12 76.6 93 55.9
Medtr3g109720 Medicago truncatula HOM05D007429 ORTHO05D003505 1.0e-12 76.6 95 53.7
Actinidia14679 Actinidia chinensis HOM05D007429 ORTHO05D003505 1.4e-12 76.3 92 50.0
Nn8g39115 Nelumbo nucifera HOM05D007429 ORTHO05D003505 1.4e-12 76.3 84 58.3
BcaB08g37037 Brassica carinata HOM05D007429 ORTHO05D003505 3.0e-12 75.1 95 53.7
A10p26140 Brassica napus HOM05D007429 ORTHO05D003505 3.0e-12 75.1 95 53.7
BraA10t44673Z Brassica rapa HOM05D007429 ORTHO05D003505 3.0e-12 75.1 95 53.7
Carub.0006s1011 Capsella rubella HOM05D007429 ORTHO05D003505 3.9e-12 74.7 95 51.6
CiPaw.08G026200 Carya illinoinensis HOM05D007429 ORTHO05D003505 3.9e-12 74.7 96 52.1
Glyma.04G084800 Glycine max HOM05D007429 ORTHO05D003505 3.9e-12 74.7 87 52.9
THA.LOC104811265 Tarenaya hassleriana HOM05D007429 ORTHO05D003505 3.9e-12 74.7 94 54.3
MD15G1092600 Malus domestica HOM05D007429 ORTHO05D003505 6.7e-12 73.9 94 53.2
AUR62042440 Chenopodium quinoa HOM05D007429 ORTHO05D003505 8.8e-12 73.6 93 47.3
AL6G22340 Arabidopsis lyrata HOM05D007429 ORTHO05D003505 1.1e-11 73.2 95 51.6
AT5G11630 Arabidopsis thaliana HOM05D007429 ORTHO05D003505 1.1e-11 73.2 95 51.6
BcaC04g19209 Brassica carinata HOM05D007429 ORTHO05D003505 1.1e-11 73.2 95 52.6
BolC9t59348H Brassica oleracea HOM05D007429 ORTHO05D003505 1.1e-11 73.2 95 52.6
CARHR187590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 1.1e-11 73.2 90 53.3
Dinv27908 Davidia involucrata HOM05D007429 ORTHO05D003505 1.1e-11 73.2 91 50.5
C09p65190 Brassica napus HOM05D007429 ORTHO05D003505 1.5e-11 72.8 95 52.6
Cfa013372 Carpinus fangiana HOM05D007429 ORTHO05D003505 1.5e-11 72.8 96 50.0
Phvul.009G110300 Phaseolus vulgaris HOM05D007429 ORTHO05D003505 1.5e-11 72.8 94 53.2
Actinidia13337 Actinidia chinensis HOM05D007429 ORTHO05D003505 2.0e-11 72.4 96 49.0
Dinv23374 Davidia involucrata HOM05D007429 ORTHO05D003505 2.0e-11 72.4 94 48.9
FAN27G3027 Fragaria x ananassa HOM05D007429 ORTHO05D003505 2.0e-11 72.4 94 51.1
RcHm_v2.0_Chr6g0306421 Rosa chinensis HOM05D007429 ORTHO05D003505 2.0e-11 72.4 90 51.1
Sabra06G0186100 Salix brachista HOM05D008609 ORTHO05D010987 2.0e-11 72.4 85 54.1
AUR62009266 Chenopodium quinoa HOM05D007429 ORTHO05D003505 2.5e-11 72.0 93 46.2
Thhalv10005203m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 2.5e-11 72.0 90 53.3
Sc09g0009340 Simmondsia chinensis HOM05D007429 ORTHO05D003505 2.5e-11 72.0 91 51.6
Sopen08g020350 Solanum pennellii HOM05D007429 ORTHO05D003505 4.3e-11 71.2 93 49.5
Hund19504 Selenicereus undatus HOM05D007429 ORTHO05D003505 5.7e-11 70.9 97 50.5
Solyc08g066520.3 Solanum lycopersicum HOM05D007429 ORTHO05D003505 7.4e-11 70.5 86 50.0
PGSC0003DMG402029142 Solanum tuberosum HOM05D007429 ORTHO05D003505 9.7e-11 70.1 93 48.4
Gohir.D05G048100 Gossypium hirsutum HOM05D007429 ORTHO05D003505 1.3e-10 69.7 86 52.3
Gohir.D08G270600 Gossypium hirsutum HOM05D007429 ORTHO05D003505 1.7e-10 69.3 97 49.5
Lsat_1_v5_gn_6_22640 Lactuca sativa HOM05D007429 ORTHO05D003505 1.7e-10 69.3 93 46.2
Lalb_Chr23g0269661 Lupinus albus HOM05D007429 ORTHO05D003505 1.7e-10 69.3 86 48.8
CSS0037511 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 2.2e-10 68.9 96 44.8
Gohir.A05G046400 Gossypium hirsutum HOM05D007429 ORTHO05D003505 2.2e-10 68.9 85 54.1
Thhalv10015136m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 2.8e-10 68.6 84 54.8
FvH4_2g35460 Fragaria vesca HOM05D007429 ORTHO05D003505 4.8e-10 67.8 84 51.2
Nn6g35292 Nelumbo nucifera HOM05D007429 ORTHO05D003505 6.3e-10 67.4 80 50.0
PGR031G3761 Punica granatum HOM05D007429 ORTHO05D003505 8.2e-10 67.0 82 50.0
Oeu030718.1 Olea europaea HOM05D007429 ORTHO05D003505 1.8e-09 65.9 93 45.2
Aqoxy7G01463 Aquilegia oxysepala HOM05D007429 ORTHO05D003505 2.4e-09 65.5 93 46.2
FAN20G1676 Fragaria x ananassa HOM05D002792 ORTHO05D003039 3.1e-09 65.1 88 50.0
BcaC06g34251 Brassica carinata HOM05D006762 ORTHO05D003505 5.3e-09 64.3 72 50.0
C07p31100 Brassica napus HOM05D006762 ORTHO05D003505 5.3e-09 64.3 72 50.0
Cpa.g.sc29.168 Carica papaya HOM05D006762 ORTHO05D003505 5.3e-09 64.3 102 43.1
Duzib168G1390 Durio zibethinus HOM05D007429 ORTHO05D003505 6.9e-09 63.9 83 53.0
arahy.Tifrunner.gnm1.ann1.ZH3G1A Arachis hypogaea HOM05D007429 ORTHO05D003505 9.1e-09 63.5 113 39.8
MELO3C013933.2 Cucumis melo HOM05D006762 ORTHO05D003505 9.1e-09 63.5 88 43.2
GSVIVG01035615001 Vitis vinifera HOM05D007429 ORTHO05D003505 9.1e-09 63.5 82 48.8
A06p45070 Brassica napus HOM05D006762 ORTHO05D003505 1.2e-08 63.2 73 49.3
Ca_15587_v3 Cicer arietinum L. HOM05D002792 ORTHO05D003039 1.2e-08 63.2 51 64.7
ClCG10G002600 Citrullus lanatus HOM05D006762 ORTHO05D003505 1.5e-08 62.8 78 47.4
HanXRQChr02g0050601 Helianthus annuus HOM05D007429 ORTHO05D003505 1.5e-08 62.8 95 44.2
MBI01_g42895_MAGBIO Magnolia biondii HOM05D007429 ORTHO05D003505 1.5e-08 62.8 44 70.5
BcaC06g31382 Brassica carinata HOM05D006762 ORTHO05D003505 2.0e-08 62.4 72 48.6
Ciclev10010039m.g Citrus clementina HOM05D007429 ORTHO05D003505 2.0e-08 62.4 85 49.4
BcaC06g31384 Brassica carinata HOM05D006762 ORTHO05D003505 3.4e-08 61.6 72 48.6
Sp2g12170 Schrenkiella parvula HOM05D006762 ORTHO05D003505 5.9e-08 60.8 72 48.6
Ciclev10023003m.g Citrus clementina HOM05D006762 ORTHO05D003505 7.7e-08 60.5 102 40.2
COL.COLO4_37166 Corchorus olitorius HOM05D006762 ORTHO05D003505 7.7e-08 60.5 59 54.2
Gohir.A08G249800 Gossypium hirsutum HOM05D007429 ORTHO05D003505 7.7e-08 60.5 86 50.0
Lj8A263T41 Lonicera japonica HOM05D006762 ORTHO05D003505 7.7e-08 60.5 78 51.3
arahy.Tifrunner.gnm1.ann1.R0MHDP Arachis hypogaea HOM05D007429 ORTHO05D003505 1.0e-07 60.1 60 55.0
CARHR201590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 1.0e-07 60.1 83 51.8
C02p48680 Brassica napus HOM05D006762 ORTHO05D003505 1.3e-07 59.7 72 47.2
BolC2t10960H Brassica oleracea HOM05D006762 ORTHO05D003505 1.3e-07 59.7 72 47.2
AL8G10530 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 1.7e-07 59.3 56 55.4
A02p31340 Brassica napus HOM05D006762 ORTHO05D003505 1.7e-07 59.3 88 43.2
BraA02t08136Z Brassica rapa HOM05D006762 ORTHO05D003505 1.7e-07 59.3 88 43.2
CANSAT21G1567 Cannabis sativa HOM05D006762 ORTHO05D003505 1.7e-07 59.3 84 44.0
CsaV3_3G002630 Cucumis sativus L. HOM05D006762 ORTHO05D003505 1.7e-07 59.3 79 46.8
Sabra16G0215100 Salix brachista HOM05D006762 ORTHO05D003505 1.7e-07 59.3 95 38.9
VMungo1309G0862 Vigna mungo HOM05D007429 ORTHO05D003505 2.2e-07 58.9 47 66.0
Aa31csc22G110 Aethionema arabicum HOM05D006762 ORTHO05D003505 2.9e-07 58.5 89 41.6
BolC7t43652H Brassica oleracea HOM05D006762 ORTHO05D003505 2.9e-07 58.5 68 50.0
BraA06t27376Z Brassica rapa HOM05D006762 ORTHO05D003505 2.9e-07 58.5 68 50.0
Cc08_g09700 Coffea canephora HOM05D007429 ORTHO05D003505 2.9e-07 58.5 94 41.5
DCAR_000754 Daucus carota HOM05D002792 ORTHO05D003039 2.9e-07 58.5 53 54.7
PSO173G0075 Papaver somniferum HOM05D007429 ORTHO05D003505 2.9e-07 58.5 85 48.2
AL7G37400 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 3.8e-07 58.2 48 58.3
CANSAT25G2095 Cannabis sativa HOM05D007429 ORTHO05D003505 3.8e-07 58.2 83 45.8
Carub.0008s0032 Capsella rubella HOM05D006762 ORTHO05D003505 3.8e-07 58.2 57 54.4
Cfa013373 Carpinus fangiana HOM05D007429 ORTHO05D003505 3.8e-07 58.2 44 63.6
Migut.A01106 Erythranthe guttata HOM05D006762 ORTHO05D003505 3.8e-07 58.2 78 38.5
Migut.E01531 Erythranthe guttata HOM05D007429 ORTHO05D003505 3.8e-07 58.2 93 44.1
Lalb_Chr08g0243031 Lupinus albus HOM05D007429 ORTHO05D003505 3.8e-07 58.2 51 58.8
TAR629G0824 Trochodendron aralioides HOM05D006762 ORTHO05D003505 3.8e-07 58.2 65 52.3
PSO824G0083 Papaver somniferum HOM05D007429 ORTHO05D003505 5.0e-07 57.8 85 45.9
SalBow6G1716 Salvia bowleyana HOM05D006762 ORTHO05D003505 5.0e-07 57.8 65 47.7
TWI34G0747 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 5.0e-07 57.8 94 45.7
TWI63G1379 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 5.0e-07 57.8 84 46.4
unitig_21.g20319 Utricularia gibba HOM05D006762 ORTHO05D003505 5.0e-07 57.8 80 43.8
CARHR173910 Cardamine hirsuta HOM05D006762 ORTHO05D003505 6.5e-07 57.4 78 46.2
Manes.07G073601 Manihot esculenta HOM05D007429 ORTHO05D003505 6.5e-07 57.4 67 49.3
Aqoxy7G00783 Aquilegia oxysepala HOM05D006762 ORTHO05D003505 8.5e-07 57.0 46 58.7
HanXRQChr03g0087771 Helianthus annuus HOM05D006762 ORTHO05D003505 8.5e-07 57.0 79 44.3
Potri.001G333800 Populus trichocarpa HOM05D006762 ORTHO05D003505 1.1e-06 56.6 85 40.0
QL12p012005 Quercus lobata HOM05D006762 ORTHO05D003505 1.1e-06 56.6 81 44.4
SalBow6G0204 Salvia bowleyana HOM05D006762 ORTHO05D003505 1.1e-06 56.6 69 44.9
Sed0021009 Sechium edule HOM05D006762 ORTHO05D003505 1.1e-06 56.6 81 39.5
BcaC03g16962 Brassica carinata HOM05D006762 ORTHO05D003505 1.4e-06 56.2 69 47.8
Sed0003359 Sechium edule HOM05D007429 ORTHO05D003505 1.4e-06 56.2 86 43.0
ATR0705G084 Amborella trichopoda HOM05D007429 ORTHO05D003505 1.9e-06 55.8 85 42.4
AT5G47455 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 1.9e-06 55.8 55 52.7
ECA240G1429 Erigeron canadensis HOM05D006762 ORTHO05D003505 1.9e-06 55.8 90 42.2
Potri.017G068600 Populus trichocarpa HOM05D006762 ORTHO05D003505 2.5e-06 55.5 68 45.6
GSVIVG01006992001 Vitis vinifera HOM05D006762 ORTHO05D003505 2.5e-06 55.5 89 43.8
Thhalv10001082m.g Eutrema salsugineum HOM05D006762 ORTHO05D003505 3.2e-06 55.1 79 44.3
Lsat_1_v5_gn_6_90840 Lactuca sativa HOM05D006762 ORTHO05D003505 3.2e-06 55.1 76 46.1
CiPaw.11G079800 Carya illinoinensis HOM05D006762 ORTHO05D003505 4.2e-06 54.7 69 49.3
Cc08_g12340 Coffea canephora HOM05D006762 ORTHO05D003505 4.2e-06 54.7 46 54.3
Lalb_Chr09g0330061 Lupinus albus HOM05D006762 ORTHO05D003505 4.2e-06 54.7 93 43.0
Gorai.004G198000 Gossypium raimondii HOM05D006762 ORTHO05D003505 5.5e-06 54.3 77 45.5
PGSC0003DMG400004817 Solanum tuberosum HOM05D006762 ORTHO05D003505 5.5e-06 54.3 64 45.3
CAN.G1058.38 Capsicum annuum HOM05D006762 ORTHO05D003505 7.2e-06 53.9 98 37.8
ECA233G1441 Erigeron canadensis HOM05D007429 ORTHO05D003505 7.2e-06 53.9 95 40.0
vmacro21548 Vaccinium macrocarpon HOM05D006762 ORTHO05D003505 7.2e-06 53.9 69 47.8
Glyma.05G060100 Glycine max HOM05D006762 ORTHO05D003505 9.4e-06 53.5 66 51.5
Gohir.A08G169800 Gossypium hirsutum HOM05D006762 ORTHO05D003505 9.4e-06 53.5 77 45.5
Gohir.D08G188100 Gossypium hirsutum HOM05D006762 ORTHO05D003505 9.4e-06 53.5 77 45.5
Gorai.004G288500 Gossypium raimondii HOM05D007429 ORTHO05D003505 9.4e-06 53.5 80 47.5


User provided reference genes

Program Settings