Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G0710 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 2.0e-81 305.8 164 100.0
CDE02G2963 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 5.9e-62 241.1 151 86.8
Nn3g18605 Nelumbo nucifera HOM05D004221 ORTHO05D004998 5.7e-57 224.6 165 74.5
Hund24383 Selenicereus undatus HOM05D004221 ORTHO05D004998 7.7e-54 214.2 159 69.8
TAR629G0713 Trochodendron aralioides HOM05D004221 ORTHO05D004998 5.0e-53 211.5 168 69.6
TAR629G3528 Trochodendron aralioides HOM05D004221 ORTHO05D004998 8.6e-53 210.7 168 69.6
Hma1.2p1_0513F.1_g169420 Hydrangea macrophylla HOM05D004221 ORTHO05D004998 1.1e-52 210.3 157 70.1
Gohir.A01G012400 Gossypium hirsutum HOM05D004221 ORTHO05D004998 3.3e-52 208.8 168 67.3
Gorai.002G015400 Gossypium raimondii HOM05D004221 ORTHO05D004998 5.5e-52 208.0 168 67.3
COL.COLO4_33086 Corchorus olitorius HOM05D004221 ORTHO05D004998 7.2e-52 207.6 168 65.5
Gohir.D01G013600 Gossypium hirsutum HOM05D004221 ORTHO05D004998 7.2e-52 207.6 168 66.7
Potri.005G090100 Populus trichocarpa HOM05D004221 ORTHO05D004998 7.2e-52 207.6 169 65.7
Thecc.02G156600 Theobroma cacao HOM05D004221 ORTHO05D004998 2.1e-51 206.1 166 66.3
Actinidia04067 Actinidia chinensis HOM05D004221 ORTHO05D004998 3.6e-51 205.3 165 66.7
MBI06_g27498_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 3.6e-51 205.3 153 73.2
PGR044G1895 Punica granatum HOM05D004221 ORTHO05D004998 3.6e-51 205.3 165 66.7
Cfa008767 Carpinus fangiana HOM05D004221 ORTHO05D004998 4.7e-51 204.9 161 68.3
AUR62032953 Chenopodium quinoa HOM05D004221 ORTHO05D004998 6.1e-51 204.5 168 64.9
CiPaw.06G062100 Carya illinoinensis HOM05D004221 ORTHO05D004998 8.0e-51 204.1 150 71.3
Actinidia04331 Actinidia chinensis HOM05D004221 ORTHO05D004998 1.4e-50 203.4 165 66.1
EL10Ac9g22978 Beta vulgaris HOM05D004221 ORTHO05D004998 1.4e-50 203.4 166 65.1
Manes.11G108400 Manihot esculenta HOM05D004221 ORTHO05D004998 1.4e-50 203.4 162 66.7
HPP92_005060 Vanilla planifolia HOM05D004221 ORTHO05D004998 2.3e-50 202.6 156 69.2
Nitab4.5_0013217g0020 Nicotiana tabacum HOM05D004221 ORTHO05D004998 3.0e-50 202.2 154 69.5
CAN.G282.46 Capsicum annuum HOM05D004221 ORTHO05D004998 1.2e-49 200.3 153 69.3
Ciclev10032992m.g Citrus clementina HOM05D004221 ORTHO05D004998 2.0e-49 199.5 163 66.3
PSO017G5121 Papaver somniferum HOM05D004221 ORTHO05D004998 2.6e-49 199.1 149 71.8
Potri.007G074042 Populus trichocarpa HOM05D004221 ORTHO05D004998 2.6e-49 199.1 155 65.8
Sed0003164 Sechium edule HOM05D004221 ORTHO05D004998 2.6e-49 199.1 168 63.7
Solyc01g008270.3 Solanum lycopersicum HOM05D004221 ORTHO05D004998 3.4e-49 198.7 155 68.4
Sopen01g003790 Solanum pennellii HOM05D004221 ORTHO05D004998 3.4e-49 198.7 155 68.4
Duzib132G0545 Durio zibethinus HOM05D004221 ORTHO05D004998 7.5e-49 197.6 156 65.4
Duzib132G0858 Durio zibethinus HOM05D004221 ORTHO05D004998 7.5e-49 197.6 156 65.4
Eucgr.J00883 Eucalyptus grandis HOM05D004221 ORTHO05D004998 9.8e-49 197.2 158 66.5
HanXRQChr04g0111871 Helianthus annuus HOM05D004221 ORTHO05D004998 9.8e-49 197.2 157 65.6
Lsat_1_v5_gn_4_64581 Lactuca sativa HOM05D004221 ORTHO05D004998 9.8e-49 197.2 160 65.6
PGSC0003DMG400016397 Solanum tuberosum HOM05D004221 ORTHO05D004998 1.3e-48 196.8 151 68.2
AUR62017728 Chenopodium quinoa HOM05D004221 ORTHO05D004998 1.7e-48 196.4 168 64.3
PSO170G6579 Papaver somniferum HOM05D004221 ORTHO05D004998 1.7e-48 196.4 149 71.1
ECA232G2799 Erigeron canadensis HOM05D004221 ORTHO05D004998 2.8e-48 195.7 159 62.9
ATR0618G284 Amborella trichopoda HOM05D004221 ORTHO05D004998 3.7e-48 195.3 152 69.1
CsaV3_5G020730 Cucumis sativus L. HOM05D004221 ORTHO05D004998 1.1e-47 193.7 171 62.0
TWI77G0364 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 1.1e-47 193.7 168 64.9
MSTRG.13679 Avicennia marina HOM05D004221 ORTHO05D004998 2.4e-47 192.6 148 68.9
THA.LOC104800677 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 3.1e-47 192.2 149 66.4
Migut.E00685 Erythranthe guttata HOM05D004221 ORTHO05D004998 4.1e-47 191.8 148 66.9
MD13G1003600 Malus domestica HOM05D004221 ORTHO05D004998 4.1e-47 191.8 152 65.8
MD16G1003800 Malus domestica HOM05D004221 ORTHO05D004998 4.1e-47 191.8 152 65.1
GSVIVG01026144001 Vitis vinifera HOM05D004221 ORTHO05D004998 4.1e-47 191.8 148 69.6
Haze_11779 Corylus avellana HOM05D004221 ORTHO05D004998 5.4e-47 191.4 193 58.0
AT5G23290 Arabidopsis thaliana HOM05D004221 ORTHO05D004998 7.0e-47 191.0 154 66.9
Carub.0006s2106 Capsella rubella HOM05D004221 ORTHO05D004998 7.0e-47 191.0 154 66.9
CARHR190250 Cardamine hirsuta HOM05D004221 ORTHO05D004998 7.0e-47 191.0 154 67.5
C07p44270 Brassica napus HOM05D004221 ORTHO05D004998 9.2e-47 190.7 154 67.5
C09p07830 Brassica napus HOM05D004221 ORTHO05D004998 9.2e-47 190.7 154 66.9
BolC9t53699H Brassica oleracea HOM05D004221 ORTHO05D004998 9.2e-47 190.7 154 66.9
BcaC04g23487 Brassica carinata HOM05D004221 ORTHO05D004998 1.2e-46 190.3 154 66.9
A06p34250 Brassica napus HOM05D004221 ORTHO05D004998 1.2e-46 190.3 154 66.9
A09p07020 Brassica napus HOM05D004221 ORTHO05D004998 1.2e-46 190.3 166 64.5
BolC7t44950H Brassica oleracea HOM05D004221 ORTHO05D004998 1.2e-46 190.3 154 66.9
BraA06t26357Z Brassica rapa HOM05D004221 ORTHO05D004998 1.2e-46 190.3 154 66.9
BraA09t36350Z Brassica rapa HOM05D004221 ORTHO05D004998 1.2e-46 190.3 166 64.5
Sp2g23860 Schrenkiella parvula HOM05D004221 ORTHO05D004998 2.0e-46 189.5 152 65.1
TWI74G0522 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 2.0e-46 189.5 168 64.3
AL6G34550 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 2.7e-46 189.1 154 66.2
arahy.Tifrunner.gnm1.ann1.8BKN44 Arachis hypogaea HOM05D004221 ORTHO05D004998 2.7e-46 189.1 150 66.7
arahy.Tifrunner.gnm1.ann1.G8X8S8 Arachis hypogaea HOM05D004221 ORTHO05D004998 2.7e-46 189.1 150 66.7
arahy.Tifrunner.gnm1.ann1.VLL77W Arachis hypogaea HOM05D004221 ORTHO05D004998 2.7e-46 189.1 150 66.7
Prupe.1G348800 Prunus persica HOM05D004221 ORTHO05D004998 2.7e-46 189.1 153 65.4
CANSAT78G1084 Cannabis sativa HOM05D004221 ORTHO05D004998 3.5e-46 188.7 158 63.3
Lj5g0004809 Lotus japonicus HOM05D004221 ORTHO05D004998 4.5e-46 188.3 159 63.5
Lalb_Chr06g0163921 Lupinus albus HOM05D004221 ORTHO05D004998 5.9e-46 188.0 163 62.6
THA.LOC104818379 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 1.3e-45 186.8 153 66.7
Aa31LG11G2750 Aethionema arabicum HOM05D004221 ORTHO05D004998 1.7e-45 186.4 151 63.6
unitig_699.g19553 Utricularia gibba HOM05D004221 ORTHO05D004998 1.7e-45 186.4 151 63.6
Glyma.20G103300 Glycine max HOM05D004221 ORTHO05D004998 2.3e-45 186.0 161 64.6
Os10g0488100 Oryza sativa ssp. japonica HOM05D004221 ORTHO05D004998 2.9e-45 185.7 148 66.2
RcHm_v2.0_Chr4g0446851 Rosa chinensis HOM05D004221 ORTHO05D004998 3.8e-45 185.3 151 64.2
Cpa.g.sc60.76 Carica papaya HOM05D004221 ORTHO05D004998 8.6e-45 184.1 141 68.1
Thhalv10005074m.g Eutrema salsugineum HOM05D004221 ORTHO05D004998 8.6e-45 184.1 154 64.9
Sc26g0002050 Simmondsia chinensis HOM05D004221 ORTHO05D004998 8.6e-45 184.1 151 64.9
Zm00001eb045320 Zea mays HOM05D004221 ORTHO05D004998 8.6e-45 184.1 148 66.2
Aqoxy3G04291 Aquilegia oxysepala HOM05D004221 ORTHO05D004998 1.1e-44 183.7 151 64.2
FAN23G3078 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.1e-44 183.7 151 62.3
Duzib052G1226 Durio zibethinus HOM05D004221 ORTHO05D004998 2.5e-44 182.6 149 65.1
FAN07G0046 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.5e-44 182.6 151 62.9
FAN17G0592 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.5e-44 182.6 151 62.3
CSS0001435 Camellia sinensis var. sinensis HOM05D004221 ORTHO05D004998 3.3e-44 182.2 141 68.8
FAN10G4155 Fragaria x ananassa HOM05D004221 ORTHO05D004998 4.3e-44 181.8 151 60.9
FAN12G1261 Fragaria x ananassa HOM05D004221 ORTHO05D004998 5.6e-44 181.4 150 62.7
FvH4_4g37090 Fragaria vesca HOM05D004221 ORTHO05D004998 9.5e-44 180.6 152 61.2
FAN03G0273 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.2e-43 180.3 151 60.9
VMungo0720G0328 Vigna mungo HOM05D004221 ORTHO05D004998 1.2e-43 180.3 151 63.6
Dinv17642 Davidia involucrata HOM05D004221 ORTHO05D004998 1.6e-43 179.9 141 70.2
TAR371G0536 Trochodendron aralioides HOM05D004221 ORTHO05D004998 2.1e-43 179.5 157 61.8
BcaB04g19880 Brassica carinata HOM05D004221 ORTHO05D004998 3.6e-43 178.7 164 61.0
Medtr1g114500 Medicago truncatula HOM05D004221 ORTHO05D004998 3.6e-43 178.7 163 60.7
Sabra07G0062100 Salix brachista HOM05D004221 ORTHO05D004998 3.6e-43 178.7 213 49.3
Ca_11255_v3 Cicer arietinum L. HOM05D004221 ORTHO05D004998 4.7e-43 178.3 163 62.0
Glyma.10G286000 Glycine max HOM05D004221 ORTHO05D004998 4.7e-43 178.3 151 63.6
Nitab4.5_0000069g0160 Nicotiana tabacum HOM05D004221 ORTHO05D004998 6.1e-43 177.9 132 70.5
Phvul.007G014900 Phaseolus vulgaris HOM05D004221 ORTHO05D004998 6.1e-43 177.9 151 62.9
Lj3A847T45 Lonicera japonica HOM05D004221 ORTHO05D004998 8.0e-43 177.6 129 71.3
ClCG01G008100 Citrullus lanatus HOM05D004221 ORTHO05D004998 1.0e-42 177.2 203 52.7
FAN15G1018 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.0e-42 177.2 151 60.3
TPR.G4058 Trifolium pratense HOM05D004221 ORTHO05D004998 1.4e-42 176.8 164 59.8
Rhsim09G0069500 Rhododendron simsii HOM05D004221 ORTHO05D004998 6.8e-42 174.5 138 68.1
Sabra05G0074200 Salix brachista HOM05D004221 ORTHO05D004998 6.8e-42 174.5 245 46.5
Duzib132G0203 Durio zibethinus HOM05D004221 ORTHO05D004998 8.9e-42 174.1 129 69.0
Psat6g233960 Pisum sativum HOM05D004221 ORTHO05D004998 1.2e-41 173.7 151 61.6
vmacro15987 Vaccinium macrocarpon HOM05D004221 ORTHO05D004998 1.5e-41 173.3 139 66.9
SGA_v2.0_scaffold256G45657 Striga asiatica HOM05D004221 ORTHO05D004998 2.0e-41 172.9 191 53.4
Cc00_g07040 Coffea canephora HOM05D004221 ORTHO05D004998 1.3e-40 170.2 125 69.6
DCAR_023468 Daucus carota HOM05D004221 ORTHO05D004998 2.2e-40 169.5 126 69.0
Peaxi162Scf00021g02223 Petunia axillaris HOM05D004221 ORTHO05D004998 2.4e-39 166.0 155 59.4
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.0e-38 162.9 151 57.0
FAN17G2528 Fragaria x ananassa HOM05D004221 ORTHO05D004998 7.8e-38 161.0 151 56.3
FAN10G1077 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.0e-37 160.6 151 55.6
Atru.chr11.1114 Acer truncatum HOM05D004221 ORTHO05D004998 1.3e-37 160.2 136 61.8
RcHm_v2.0_Chr1g0343381 Rosa chinensis HOM05D004221 ORTHO05D004998 1.3e-37 160.2 137 62.8
RcHm_v2.0_Chr2g0169341 Rosa chinensis HOM05D004221 ORTHO05D004998 3.0e-37 159.1 125 65.6
RcHm_v2.0_Chr6g0253901 Rosa chinensis HOM05D004221 ORTHO05D004998 3.0e-37 159.1 125 65.6
SalBow2G0865 Salvia bowleyana HOM05D004221 ORTHO05D004998 3.9e-37 158.7 125 67.2
RcHm_v2.0_Chr4g0389221 Rosa chinensis HOM05D004221 ORTHO05D004998 6.6e-37 157.9 125 65.6
RcHm_v2.0_Chr4g0391031 Rosa chinensis HOM05D004221 ORTHO05D004998 4.3e-36 155.2 125 64.0
RcHm_v2.0_Chr4g0391701 Rosa chinensis HOM05D004221 ORTHO05D004998 5.6e-36 154.8 130 63.1
RcHm_v2.0_Chr5g0039981 Rosa chinensis HOM05D004221 ORTHO05D004998 7.3e-36 154.5 125 64.0
RcHm_v2.0_Chr5g0070771 Rosa chinensis HOM05D004221 ORTHO05D004998 1.6e-35 153.3 125 63.2
AL2G24680 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 4.7e-35 151.8 120 64.2
AL8G16830 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 4.7e-35 151.8 120 64.2
SEGI_18337 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 4.7e-35 151.8 164 50.6
SMO114G0084 Selaginella moellendorffii HOM05D004221 ORTHO05D004998 4.0e-34 148.7 154 48.7
FAN07G1220 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.5e-33 146.7 124 60.5
Ah.01g012690 Amaranthus hybridus HOM05D004221 ORTHO05D004998 9.8e-33 144.1 110 69.1
Mapoly0041s0007 Marchantia polymorpha HOM05D004221 ORTHO05D004998 2.2e-32 142.9 162 45.7
AagrBONN_evm.TU.Sc2ySwM_117.4013 Anthoceros agrestis HOM05D004221 ORTHO05D004998 2.4e-31 139.4 156 46.8
AUR62032946 Chenopodium quinoa HOM05D004221 ORTHO05D004998 7.0e-31 137.9 119 63.0
SGA_v2.0_scaffold358G49836 Striga asiatica HOM05D004221 ORTHO05D004998 9.2e-31 137.5 167 49.1
Pp3c1_32320 Physcomitrium patens HOM05D004221 ORTHO05D004998 2.1e-30 136.3 151 49.0
Oeu013195.1 Olea europaea HOM05D004221 ORTHO05D004998 1.0e-29 134.0 97 74.2
Oeu041209.1 Olea europaea HOM05D004221 ORTHO05D004998 4.3e-28 128.6 98 71.4
SHI21211 Sapria himalayana HOM05D004221 ORTHO05D004998 4.9e-24 115.2 205 37.6
SEGI_37490 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 2.1e-22 109.8 85 60.0
CBR_g19844 Chara braunii HOM05D002142 ORTHO05D001189 3.5e-22 109.0 153 40.5
Lj9A327T34 Lonicera japonica HOM05D004221 ORTHO05D004998 7.8e-22 107.8 144 47.2
MELO3C000273.2 Cucumis melo HOM05D004221 ORTHO05D004998 3.9e-21 105.5 80 70.0
A02p41030 Brassica napus HOM05D004221 ORTHO05D004998 1.6e-19 100.1 80 65.0
RcHm_v2.0_Chr5g0067401 Rosa chinensis HOM05D004221 ORTHO05D004998 2.8e-19 99.4 81 65.4
RcHm_v2.0_Chr6g0266371 Rosa chinensis HOM05D004221 ORTHO05D004998 2.8e-19 99.4 81 65.4
RcHm_v2.0_Chr3g0478071 Rosa chinensis HOM05D004221 ORTHO05D004998 6.2e-19 98.2 81 64.2
MELO3C033736.2 Cucumis melo HOM05D004221 ORTHO05D004998 8.9e-18 94.4 74 68.9
MCO07G569 Micromonas commoda HOM05D004221 ORTHO05D004998 8.9e-18 94.4 145 35.2
MBI19_g48155_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 1.1e-15 87.4 66 74.2
Gorai.002G209700 Gossypium raimondii HOM05D004221 ORTHO05D004998 2.4e-15 86.3 57 70.2
Gohir.D01G168833 Gossypium hirsutum HOM05D004221 ORTHO05D004998 3.2e-15 85.9 57 70.2
RcHm_v2.0_Chr6g0274601 Rosa chinensis HOM05D004221 ORTHO05D004998 4.2e-15 85.5 75 61.3
MBI19_g31737_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 7.1e-15 84.7 66 72.7
Sed0018067 Sechium edule HOM05D004221 ORTHO05D004998 7.1e-15 84.7 69 65.2
Gohir.A01G178033 Gossypium hirsutum HOM05D004221 ORTHO05D004998 6.6e-13 78.2 56 64.3
AL1G29290 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 6.9e-10 68.2 49 69.4
AL8G24780 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 6.9e-10 68.2 49 69.4
PRCOL_00006790 Prasinoderma coloniale HOM05D004221 ORTHO05D004998 1.2e-09 67.4 114 34.2
Oeu013194.1 Olea europaea HOM05D004221 ORTHO05D004998 2.6e-09 66.2 48 66.7
Cre12.g523150 Chlamydomonas reinhardtii HOM05D004221 ORTHO05D004998 3.4e-09 65.9 143 28.7
SalBow3G1738 Salvia bowleyana HOM05D004221 ORTHO05D004998 2.2e-08 63.2 50 62.0


User provided reference genes

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