Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G0639 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 1.7e-219 765.8 395 100.0
CDE02G2672 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 4.0e-189 664.8 413 86.0
TAR633G2239 Trochodendron aralioides HOM05D005892 ORTHO05D007364 6.5e-123 444.9 409 60.1
Cfa020027 Carpinus fangiana HOM05D005892 ORTHO05D007364 4.8e-118 428.7 400 59.5
CiPaw.10G017200 Carya illinoinensis HOM05D005892 ORTHO05D007364 7.7e-116 421.4 401 58.4
GSVIVG01029940001 Vitis vinifera HOM05D005892 ORTHO05D007364 2.2e-115 419.9 416 56.7
Lj3A860G48 Lonicera japonica HOM05D005892 ORTHO05D007364 2.9e-115 419.5 402 58.5
Manes.08G033200 Manihot esculenta HOM05D005892 ORTHO05D007364 5.0e-115 418.7 408 57.8
Ciclev10011749m.g Citrus clementina HOM05D005892 ORTHO05D007364 1.4e-114 417.2 402 57.0
CSS0032108 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 2.7e-113 412.9 401 56.9
COL.COLO4_29579 Corchorus olitorius HOM05D005892 ORTHO05D007364 3.6e-113 412.5 399 57.4
Prupe.7G094800 Prunus persica HOM05D005892 ORTHO05D007364 2.3e-112 409.8 404 55.9
PSO384G1009 Papaver somniferum HOM05D005892 ORTHO05D007364 1.5e-111 407.1 406 56.9
Cpa.g.sc35.59 Carica papaya HOM05D005892 ORTHO05D007364 2.6e-111 406.4 409 55.7
Thecc.05G104100 Theobroma cacao HOM05D005892 ORTHO05D007364 2.6e-111 406.4 398 58.5
PGR142G3547 Punica granatum HOM05D005892 ORTHO05D007364 3.3e-111 406.0 404 55.2
FAN14G3222 Fragaria x ananassa HOM05D005892 ORTHO05D007364 4.4e-111 405.6 398 56.3
FAN05G3301 Fragaria x ananassa HOM05D005892 ORTHO05D007364 5.7e-111 405.2 398 56.3
PSO339G5192 Papaver somniferum HOM05D005892 ORTHO05D007364 9.7e-111 404.4 406 56.7
MD14G1038600 Malus domestica HOM05D005892 ORTHO05D007364 1.7e-110 403.7 404 55.9
Duzib093G2092 Durio zibethinus HOM05D005892 ORTHO05D007364 2.8e-110 402.9 398 57.0
Gorai.002G235400 Gossypium raimondii HOM05D005892 ORTHO05D007364 4.8e-110 402.1 398 57.0
Gohir.A01G201600 Gossypium hirsutum HOM05D005892 ORTHO05D007364 6.3e-110 401.7 398 57.0
RcHm_v2.0_Chr3g0475881 Rosa chinensis HOM05D005892 ORTHO05D007364 6.3e-110 401.7 393 56.7
Gohir.D01G191500 Gossypium hirsutum HOM05D005892 ORTHO05D007364 1.4e-109 400.6 398 56.5
Cc11_g05910 Coffea canephora HOM05D005892 ORTHO05D007364 1.8e-109 400.2 402 55.5
HanXRQChr16g0527301 Helianthus annuus HOM05D005892 ORTHO05D007364 1.2e-108 397.5 389 57.1
Peaxi162Scf01139g00002 Petunia axillaris HOM05D005892 ORTHO05D007364 2.0e-108 396.7 404 54.7
Os01g0263500 Oryza sativa ssp. japonica HOM05D005892 ORTHO05D007364 2.6e-108 396.4 407 54.8
Hma1.2p1_1525F.1_g288970 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 4.5e-108 395.6 376 59.0
Atru.chr8.1369 Acer truncatum HOM05D005892 ORTHO05D007364 1.3e-107 394.0 408 55.9
Zm00001eb156320 Zea mays HOM05D005892 ORTHO05D007364 2.2e-107 393.3 429 54.3
QL07p036776 Quercus lobata HOM05D005892 ORTHO05D007364 2.9e-107 392.9 456 50.2
Lsat_1_v5_gn_4_22820 Lactuca sativa HOM05D005892 ORTHO05D007364 3.8e-107 392.5 401 56.1
Potri.016G070700 Populus trichocarpa HOM05D005892 ORTHO05D007364 3.8e-107 392.5 400 54.0
Eucgr.K02619 Eucalyptus grandis HOM05D005892 ORTHO05D007364 8.5e-107 391.3 410 53.7
Phvul.001G195400 Phaseolus vulgaris HOM05D005892 ORTHO05D007364 1.1e-106 391.0 395 54.9
Glyma.19G026300 Glycine max HOM05D005892 ORTHO05D007364 1.9e-106 390.2 395 54.9
HPP92_001371 Vanilla planifolia HOM05D005892 ORTHO05D007364 1.9e-106 390.2 408 54.7
Glyma.03G201900 Glycine max HOM05D005892 ORTHO05D007364 2.5e-106 389.8 395 54.9
Nitab4.5_0007165g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 1.2e-105 387.5 404 54.5
Nitab4.5_0005476g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 1.6e-105 387.1 404 54.5
Sed0021278 Sechium edule HOM05D005892 ORTHO05D007364 2.1e-105 386.7 398 54.3
DCAR_026818 Daucus carota HOM05D005892 ORTHO05D007364 3.6e-105 386.0 409 53.3
Medtr7g106200 Medicago truncatula HOM05D005892 ORTHO05D007364 6.1e-105 385.2 396 53.8
Psat3g029200 Pisum sativum HOM05D005892 ORTHO05D007364 6.1e-105 385.2 396 53.8
HPP92_001347 Vanilla planifolia HOM05D005892 ORTHO05D007364 1.8e-104 383.6 372 57.3
THA.LOC104816617 Tarenaya hassleriana HOM05D005892 ORTHO05D007364 2.3e-104 383.3 400 54.2
Nn2g14624 Nelumbo nucifera HOM05D005892 ORTHO05D007364 5.2e-104 382.1 346 60.7
Ca_25808_v3 Cicer arietinum L. HOM05D005892 ORTHO05D007364 2.0e-103 380.2 418 52.4
Migut.E00525 Erythranthe guttata HOM05D005892 ORTHO05D007364 2.6e-103 379.8 401 54.1
ClCG10G018360 Citrullus lanatus HOM05D005892 ORTHO05D007364 3.3e-103 379.4 397 53.9
Lalb_Chr20g0111381 Lupinus albus HOM05D005892 ORTHO05D007364 7.5e-103 378.3 394 51.3
ECA234G1824 Erigeron canadensis HOM05D005892 ORTHO05D007364 9.7e-103 377.9 391 52.9
Sabra16G0070800 Salix brachista HOM05D005892 ORTHO05D007364 1.3e-102 377.5 448 49.1
arahy.Tifrunner.gnm1.ann1.EHSJ8W Arachis hypogaea HOM05D005892 ORTHO05D007364 2.2e-102 376.7 394 51.8
MSTRG.13644 Avicennia marina HOM05D005892 ORTHO05D007364 1.4e-101 374.0 400 54.0
Lj1g0008745 Lotus japonicus HOM05D005892 ORTHO05D007364 1.8e-101 373.6 398 52.8
PGSC0003DMG400006864 Solanum tuberosum HOM05D005892 ORTHO05D007364 1.6e-100 370.5 404 52.5
Solyc01g087230.3 Solanum lycopersicum HOM05D005892 ORTHO05D007364 2.9e-99 366.3 404 52.0
Sopen01g034280 Solanum pennellii HOM05D005892 ORTHO05D007364 8.5e-99 364.8 404 52.0
Aqoxy1G00010 Aquilegia oxysepala HOM05D005892 ORTHO05D007364 1.1e-98 364.4 431 49.9
AUR62036522 Chenopodium quinoa HOM05D005892 ORTHO05D007364 2.5e-98 363.2 414 51.0
Ah.10g030320 Amaranthus hybridus HOM05D005892 ORTHO05D007364 4.2e-98 362.5 408 51.2
MBI19_g09306_MAGBIO Magnolia biondii HOM05D005892 ORTHO05D007364 9.4e-98 361.3 411 52.6
FvH4_6g20290 Fragaria vesca HOM05D005892 ORTHO05D007364 1.2e-97 360.9 338 58.9
HPP92_001441 Vanilla planifolia HOM05D005892 ORTHO05D007364 1.2e-97 360.9 408 51.7
AUR62042262 Chenopodium quinoa HOM05D005892 ORTHO05D007364 1.6e-97 360.5 387 52.7
CARHR083520 Cardamine hirsuta HOM05D005892 ORTHO05D007364 3.6e-97 359.4 403 52.6
Thhalv10020833m.g Eutrema salsugineum HOM05D005892 ORTHO05D007364 4.7e-97 359.0 405 53.3
Rhsim09G0086500 Rhododendron simsii HOM05D005892 ORTHO05D007364 8.0e-97 358.2 401 52.9
Carub.0003s0830 Capsella rubella HOM05D005892 ORTHO05D007364 1.8e-96 357.1 404 51.2
SalBow2G2452 Salvia bowleyana HOM05D005892 ORTHO05D007364 1.8e-96 357.1 425 50.8
Actinidia12433 Actinidia chinensis HOM05D005892 ORTHO05D007364 2.3e-96 356.7 351 57.0
EL10Ac9g21147 Beta vulgaris HOM05D005892 ORTHO05D007364 3.0e-96 356.3 428 49.3
Sp3g07480 Schrenkiella parvula HOM05D005892 ORTHO05D007364 4.0e-96 355.9 403 53.6
AL3G20290 Arabidopsis lyrata HOM05D005892 ORTHO05D007364 2.6e-95 353.2 404 51.2
A05p39800 Brassica napus HOM05D005892 ORTHO05D007364 4.4e-95 352.4 410 52.0
C05p58840 Brassica napus HOM05D005892 ORTHO05D007364 4.4e-95 352.4 412 51.7
BolC5t34536H Brassica oleracea HOM05D005892 ORTHO05D007364 7.5e-95 351.7 412 51.7
BraA05t22764Z Brassica rapa HOM05D005892 ORTHO05D007364 1.3e-94 350.9 410 51.2
BcaC01g06891 Brassica carinata HOM05D005892 ORTHO05D007364 1.8e-93 347.1 406 51.0
BolC3t16654H Brassica oleracea HOM05D005892 ORTHO05D007364 7.0e-93 345.1 406 50.7
BraA03t12793Z Brassica rapa HOM05D005892 ORTHO05D007364 1.6e-92 344.0 419 49.4
C03p43860 Brassica napus HOM05D005892 ORTHO05D007364 2.7e-92 343.2 406 50.5
Haze_20187 Corylus avellana HOM05D005892 ORTHO05D007364 5.0e-91 339.0 422 51.4
FAN09G4751 Fragaria x ananassa HOM05D005892 ORTHO05D007364 6.6e-91 338.6 324 58.3
A03p36220 Brassica napus HOM05D005892 ORTHO05D007364 4.0e-88 329.3 419 48.4
Hund10710 Selenicereus undatus HOM05D005892 ORTHO05D007364 6.8e-88 328.6 327 57.8
Hma1.2p1_1525F.1_g288980 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 3.4e-87 326.2 327 56.3
CsaV3_3G037930 Cucumis sativus L. HOM05D005892 ORTHO05D007364 9.8e-87 324.7 368 51.6
Sabra16G0073000 Salix brachista HOM05D005892 ORTHO05D007364 2.2e-86 323.6 414 48.6
CAN.G219.4 Capsicum annuum HOM05D005892 ORTHO05D007364 8.3e-86 321.6 358 50.0
SGA_v2.0_scaffold65G22109 Striga asiatica HOM05D005892 ORTHO05D007364 1.4e-85 320.9 416 47.6
AT3G09180 Arabidopsis thaliana HOM05D005892 ORTHO05D007364 7.8e-84 315.1 345 53.3
VMungo1383G1945 Vigna mungo HOM05D005892 ORTHO05D007364 1.7e-83 313.9 343 52.5
TAR633G0738 Trochodendron aralioides HOM05D005892 ORTHO05D007364 1.1e-82 311.2 292 60.3
Zm00001eb348930 Zea mays HOM05D005892 ORTHO05D007364 5.6e-82 308.9 352 52.0
Aa31LG3G1670 Aethionema arabicum HOM05D005892 ORTHO05D007364 1.8e-80 303.9 323 54.8
MELO3C009537.2 Cucumis melo HOM05D005892 ORTHO05D007364 8.9e-80 301.6 394 47.0
TPR.G14083 Trifolium pratense HOM05D005892 ORTHO05D007364 1.2e-79 301.2 376 49.7
ATR0068G118 Amborella trichopoda HOM05D005892 ORTHO05D007364 4.4e-79 299.3 441 45.6
arahy.Tifrunner.gnm1.ann1.PAXQ04 Arachis hypogaea HOM05D005892 ORTHO05D007364 2.7e-76 290.0 299 52.2
FAN05G1366 Fragaria x ananassa HOM05D005892 ORTHO05D007364 2.7e-76 290.0 376 48.7
unitig_52.g17290 Utricularia gibba HOM05D005892 ORTHO05D007364 3.9e-75 286.2 353 49.9
FAN05G0385 Fragaria x ananassa HOM05D005892 ORTHO05D007364 7.3e-74 282.0 274 58.8
FAN05G3684 Fragaria x ananassa HOM05D005892 ORTHO05D007364 9.5e-74 281.6 281 57.3
FAN02G1987 Fragaria x ananassa HOM05D005892 ORTHO05D007364 2.1e-73 280.4 344 49.7
Sc07g0007600 Simmondsia chinensis HOM05D005892 ORTHO05D007364 7.8e-68 261.9 287 55.4
BcaB04g18552 Brassica carinata HOM05D005892 ORTHO05D007364 4.6e-52 209.5 371 39.6
Pp3c15_4850 Physcomitrium patens HOM05D005892 ORTHO05D007364 1.9e-50 204.1 424 33.7
Mapoly0090s0009 Marchantia polymorpha HOM05D005892 ORTHO05D007364 3.3e-50 203.4 396 35.6
RcHm_v2.0_Chr1g0331121 Rosa chinensis HOM05D005892 ORTHO05D007364 2.9e-46 190.3 183 53.6
Nn2g14691 Nelumbo nucifera HOM05D005892 ORTHO05D007364 2.1e-44 184.1 131 74.0
AagrBONN_evm.TU.Sc2ySwM_228.2745 Anthoceros agrestis HOM05D005892 ORTHO05D007364 4.6e-44 183.0 408 32.1
RcHm_v2.0_Chr1g0331111 Rosa chinensis HOM05D005892 ORTHO05D007364 3.0e-43 180.3 126 74.6
Atru.chr9.699 Acer truncatum HOM05D005892 ORTHO05D007364 2.1e-36 157.5 125 66.4
Peaxi162Scf00684g00585 Petunia axillaris HOM05D005892 ORTHO05D007364 7.9e-36 155.6 298 36.9
SEGI_21584 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 7.6e-23 112.5 113 43.4
BcaC05g29638 Brassica carinata HOM05D005892 ORTHO05D007364 1.0e-19 102.1 102 57.8
Hma1.2p1_1525F.1_g288960 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 2.2e-17 94.4 83 61.4
CSS0000115 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 4.8e-17 93.2 82 62.2
Aa31sc80G50 Aethionema arabicum HOM05D005892 ORTHO05D007364 6.3e-17 92.8 56 78.6
TPR.G35563 Trifolium pratense HOM05D005892 ORTHO05D007364 8.5e-14 82.4 99 48.5
HPP92_019993 Vanilla planifolia HOM05D002096 ORTHO05D002203 3.6e-12 77.0 128 42.2
SEGI_07863 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 2.8e-09 67.4 84 47.6
CBR_g10855 Chara braunii HOM05D005892 ORTHO05D007364 2.4e-08 64.3 154 30.5
Atru.chr9.700 Acer truncatum HOM05D005892 ORTHO05D007364 2.6e-07 60.8 77 49.4


User provided reference genes

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