Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G0636 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 9.0e-139 496.9 247 100.0
CDE07G1130 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 1.1e-117 426.8 247 87.4
Gohir.A06G178200 Gossypium hirsutum HOM05D005690 ORTHO05D007075 1.6e-82 310.1 249 63.9
MBI05_g11579_MAGBIO Magnolia biondii HOM05D005690 ORTHO05D007075 2.9e-81 305.8 196 77.0
Potri.010G219000 Populus trichocarpa HOM05D005690 ORTHO05D007075 3.8e-81 305.4 245 65.7
Cpa.g.sc53.43 Carica papaya HOM05D005690 ORTHO05D007075 5.0e-81 305.1 215 74.0
Gohir.D06G176800 Gossypium hirsutum HOM05D005690 ORTHO05D007075 8.6e-81 304.3 249 62.7
Gorai.010G204700 Gossypium raimondii HOM05D005690 ORTHO05D007075 8.6e-81 304.3 249 62.7
Thecc.10G069500 Theobroma cacao HOM05D005690 ORTHO05D007075 8.6e-81 304.3 251 64.1
Nitab4.5_0000233g0230 Nicotiana tabacum HOM05D005690 ORTHO05D007075 1.5e-80 303.5 214 69.6
Nn2g13015 Nelumbo nucifera HOM05D005690 ORTHO05D007075 5.5e-80 301.6 193 78.8
CiPaw.02G175700 Carya illinoinensis HOM05D005690 ORTHO05D007075 7.2e-80 301.2 191 77.0
Potri.010G219400 Populus trichocarpa HOM05D005690 ORTHO05D007075 7.2e-80 301.2 195 76.4
COL.COLO4_32034 Corchorus olitorius HOM05D005690 ORTHO05D007075 9.5e-80 300.8 253 62.1
Duzib114G0556 Durio zibethinus HOM05D005690 ORTHO05D007075 1.2e-79 300.4 251 62.5
MD07G1177900 Malus domestica HOM05D005690 ORTHO05D007075 1.6e-79 300.1 192 77.1
Manes.07G103000 Manihot esculenta HOM05D005690 ORTHO05D007075 1.6e-79 300.1 251 64.5
TAR633G2147 Trochodendron aralioides HOM05D005690 ORTHO05D007075 1.6e-79 300.1 222 68.0
Nitab4.5_0012288g0020 Nicotiana tabacum HOM05D005690 ORTHO05D007075 3.6e-79 298.9 188 77.1
Prupe.2G217200 Prunus persica HOM05D005690 ORTHO05D007075 3.6e-79 298.9 192 77.1
GSVIVG01016316001 Vitis vinifera HOM05D005690 ORTHO05D007075 3.6e-79 298.9 195 74.9
Peaxi162Scf00108g00166 Petunia axillaris HOM05D005690 ORTHO05D007075 6.1e-79 298.1 208 70.2
Potri.008G042800 Populus trichocarpa HOM05D005690 ORTHO05D007075 6.1e-79 298.1 222 68.9
Sabra10G0169300 Salix brachista HOM05D005690 ORTHO05D007075 6.1e-79 298.1 195 75.9
Cfa001602 Carpinus fangiana HOM05D005690 ORTHO05D007075 8.0e-79 297.7 194 75.3
MD01G1111700 Malus domestica HOM05D005690 ORTHO05D007075 1.0e-78 297.4 192 76.6
arahy.Tifrunner.gnm1.ann1.08HL34 Arachis hypogaea HOM05D005690 ORTHO05D007075 2.3e-78 296.2 205 70.7
TAR636G2049 Trochodendron aralioides HOM05D005690 ORTHO05D007075 4.0e-78 295.4 195 74.9
PSO384G2564 Papaver somniferum HOM05D005690 ORTHO05D007075 5.2e-78 295.0 251 62.5
Sabra08G0029500 Salix brachista HOM05D005690 ORTHO05D007075 6.8e-78 294.7 200 73.0
MSTRG.373 Avicennia marina HOM05D005690 ORTHO05D007075 8.9e-78 294.3 192 77.6
Eucgr.J01111 Eucalyptus grandis HOM05D005690 ORTHO05D007075 8.9e-78 294.3 250 63.6
arahy.Tifrunner.gnm1.ann1.8E9GH8 Arachis hypogaea HOM05D005690 ORTHO05D007075 1.2e-77 293.9 195 72.8
Dinv11797 Davidia involucrata HOM05D005690 ORTHO05D007075 1.2e-77 293.9 195 73.8
PSO339G2382 Papaver somniferum HOM05D005690 ORTHO05D007075 1.2e-77 293.9 251 61.8
PGR044G2452 Punica granatum HOM05D005690 ORTHO05D007075 1.2e-77 293.9 237 63.3
TWI38G1302 Tripterygium wilfordii HOM05D005690 ORTHO05D007075 1.2e-77 293.9 197 72.1
FvH4_7g20020 Fragaria vesca HOM05D005690 ORTHO05D007075 1.5e-77 293.5 194 75.3
FAN03G1698 Fragaria x ananassa HOM05D005690 ORTHO05D007075 1.5e-77 293.5 194 75.3
FAN06G0212 Fragaria x ananassa HOM05D005690 ORTHO05D007075 1.5e-77 293.5 194 75.3
Medtr6g033405 Medicago truncatula HOM05D005690 ORTHO05D007075 2.0e-77 293.1 222 67.6
Haze_16926 Corylus avellana HOM05D005690 ORTHO05D007075 2.6e-77 292.7 194 74.2
Nitab4.5_0000476g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 2.6e-77 292.7 188 77.1
Glyma.17G183500 Glycine max HOM05D005690 ORTHO05D007075 4.4e-77 292.0 191 75.4
CAN.G694.84 Capsicum annuum HOM05D005690 ORTHO05D007075 7.5e-77 291.2 207 70.0
VMungo0464G0948 Vigna mungo HOM05D005690 ORTHO05D007075 7.5e-77 291.2 191 76.4
Ciclev10032614m.g Citrus clementina HOM05D005690 ORTHO05D007075 9.8e-77 290.8 192 74.5
FAN01G0973 Fragaria x ananassa HOM05D005690 ORTHO05D007075 9.8e-77 290.8 194 74.7
FAN10G0816 Fragaria x ananassa HOM05D005690 ORTHO05D007075 9.8e-77 290.8 194 74.7
RcHm_v2.0_Chr1g0363981 Rosa chinensis HOM05D005690 ORTHO05D007075 9.8e-77 290.8 192 75.5
TPR.G36634 Trifolium pratense HOM05D005690 ORTHO05D007075 9.8e-77 290.8 197 76.1
CANSAT56G3535 Cannabis sativa HOM05D005690 ORTHO05D007075 1.3e-76 290.4 197 71.1
Nitab4.5_0009003g0010 Nicotiana tabacum HOM05D005690 ORTHO05D007075 2.9e-76 289.3 184 76.6
Cc02_g11390 Coffea canephora HOM05D005690 ORTHO05D007075 8.3e-76 287.7 191 73.8
Phvul.004G075000 Phaseolus vulgaris HOM05D005690 ORTHO05D007075 3.2e-75 285.8 195 73.3
Lalb_Chr19g0129571 Lupinus albus HOM05D005690 ORTHO05D007075 7.0e-75 284.6 192 73.4
Hund19342 Selenicereus undatus HOM05D005690 ORTHO05D007075 7.0e-75 284.6 196 70.9
Atru.chr12.697 Acer truncatum HOM05D005690 ORTHO05D007075 9.2e-75 284.3 190 72.6
Lj2g0014971 Lotus japonicus HOM05D005690 ORTHO05D007075 1.2e-74 283.9 192 74.0
Hma1.2p1_2080F.1_g313490 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 1.6e-74 283.5 196 72.4
Solyc05g056090.3 Solanum lycopersicum HOM05D005690 ORTHO05D007075 1.6e-74 283.5 195 71.8
Sopen05g034500 Solanum pennellii HOM05D005690 ORTHO05D007075 1.6e-74 283.5 195 71.8
PGSC0003DMG400023460 Solanum tuberosum HOM05D005690 ORTHO05D007075 1.6e-74 283.5 195 72.3
Hma1.2p1_0453F.1_g156020 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 2.0e-74 283.1 195 72.3
Atru.chr12.670 Acer truncatum HOM05D005690 ORTHO05D007075 3.5e-74 282.3 190 72.1
Ca_04676_v3 Cicer arietinum L. HOM05D005690 ORTHO05D007075 4.6e-74 282.0 195 71.3
ECA232G2854 Erigeron canadensis HOM05D005690 ORTHO05D007075 4.6e-74 282.0 211 65.9
Rhsim09G0153300 Rhododendron simsii HOM05D005690 ORTHO05D007075 4.6e-74 282.0 192 71.9
unitig_0.g529 Utricularia gibba HOM05D005690 ORTHO05D007075 5.9e-74 281.6 192 70.8
Sed0011214 Sechium edule HOM05D005690 ORTHO05D007075 1.3e-73 280.4 201 70.1
MELO3C002879.2 Cucumis melo HOM05D005690 ORTHO05D007075 1.7e-73 280.0 199 69.8
SGA_v2.0_scaffold28G12052 Striga asiatica HOM05D005690 ORTHO05D007075 2.3e-73 279.6 177 78.0
HPP92_003607 Vanilla planifolia HOM05D005690 ORTHO05D007075 1.5e-72 276.9 193 71.0
THA.LOC104802837 Tarenaya hassleriana HOM05D005690 ORTHO05D007075 3.3e-72 275.8 243 60.9
AUR62027946 Chenopodium quinoa HOM05D005690 ORTHO05D007075 4.3e-72 275.4 196 68.4
ATR1159G074 Amborella trichopoda HOM05D005690 ORTHO05D007075 7.3e-72 274.6 195 70.3
QL08p056659 Quercus lobata HOM05D005690 ORTHO05D007075 7.3e-72 274.6 190 70.5
HanXRQChr09g0246501 Helianthus annuus HOM05D005690 ORTHO05D007075 9.5e-72 274.2 192 69.3
Peaxi162Scf01175g00023 Petunia axillaris HOM05D005690 ORTHO05D007075 9.5e-72 274.2 184 71.7
vmacro04884 Vaccinium macrocarpon HOM05D005690 ORTHO05D007075 9.5e-72 274.2 192 70.8
Migut.F01989 Erythranthe guttata HOM05D005690 ORTHO05D007075 1.2e-71 273.9 195 71.3
SalBow4G1295 Salvia bowleyana HOM05D005690 ORTHO05D007075 1.2e-71 273.9 178 71.3
EL10Ac2g03578 Beta vulgaris HOM05D005690 ORTHO05D007075 2.1e-71 273.1 196 68.9
AUR62020766 Chenopodium quinoa HOM05D005690 ORTHO05D007075 2.1e-71 273.1 246 59.3
CsaV3_5G025890 Cucumis sativus L. HOM05D005690 ORTHO05D007075 2.1e-71 273.1 199 68.8
Aa31LG9G7550 Aethionema arabicum HOM05D005690 ORTHO05D007075 3.6e-71 272.3 251 59.0
HanXRQChr17g0563371 Helianthus annuus HOM05D005690 ORTHO05D007075 3.6e-71 272.3 191 69.1
Sed0019941 Sechium edule HOM05D005690 ORTHO05D007075 4.7e-71 271.9 211 66.8
Rhsim03G0123000 Rhododendron simsii HOM05D005690 ORTHO05D007075 1.4e-70 270.4 215 65.1
Aqoxy6G02013 Aquilegia oxysepala HOM05D005690 ORTHO05D007075 1.5e-69 266.9 249 59.4
Carub.0004s1755 Capsella rubella HOM05D005690 ORTHO05D007075 4.4e-69 265.4 247 58.7
Lsat_1_v5_gn_9_67140 Lactuca sativa HOM05D005690 ORTHO05D007075 5.8e-69 265.0 178 69.7
AL4G31900 Arabidopsis lyrata HOM05D005690 ORTHO05D007075 7.5e-69 264.6 248 58.5
CARHR130040 Cardamine hirsuta HOM05D005690 ORTHO05D007075 7.5e-69 264.6 193 69.9
AT2G35790 Arabidopsis thaliana HOM05D005690 ORTHO05D007075 2.9e-68 262.7 193 68.4
Ah.16g108410 Amaranthus hybridus HOM05D005690 ORTHO05D007075 3.7e-68 262.3 233 58.8
BcaB06g28872 Brassica carinata HOM05D005690 ORTHO05D007075 4.9e-68 261.9 237 58.2
BolC4t27955H Brassica oleracea HOM05D005690 ORTHO05D007075 4.9e-68 261.9 191 68.1
C04p64770 Brassica napus HOM05D005690 ORTHO05D007075 6.4e-68 261.5 191 68.1
A04p27260 Brassica napus HOM05D005690 ORTHO05D007075 1.9e-67 260.0 192 68.8
BraA04t18224Z Brassica rapa HOM05D005690 ORTHO05D007075 1.9e-67 260.0 192 68.8
SalBow3G1299 Salvia bowleyana HOM05D005690 ORTHO05D007075 3.2e-67 259.2 209 64.1
Sp4g18050 Schrenkiella parvula HOM05D005690 ORTHO05D007075 3.2e-67 259.2 193 68.4
BcaC01g05707 Brassica carinata HOM05D005690 ORTHO05D007075 7.0e-67 258.1 192 67.2
BcaC02g07668 Brassica carinata HOM05D005690 ORTHO05D007075 7.0e-67 258.1 191 68.1
C03p22980 Brassica napus HOM05D005690 ORTHO05D007075 7.0e-67 258.1 192 67.2
Zm00001eb064810 Zea mays HOM05D005690 ORTHO05D007075 9.2e-67 257.7 189 69.8
A03p19730 Brassica napus HOM05D005690 ORTHO05D007075 1.6e-66 256.9 192 66.7
Thhalv10017166m.g Eutrema salsugineum HOM05D005690 ORTHO05D007075 1.7e-65 253.4 193 65.8
Os03g0853800 Oryza sativa ssp. japonica HOM05D005690 ORTHO05D007075 6.6e-65 251.5 159 75.5
SEGI_15078 Sequoiadendron giganteum HOM05D005690 ORTHO05D007075 2.1e-63 246.5 191 65.4
BcaB01g03881 Brassica carinata HOM05D005690 ORTHO05D007075 6.2e-63 245.0 152 77.0
ClCG09G020510 Citrullus lanatus HOM05D005690 ORTHO05D007075 5.8e-61 238.4 175 66.9
Eucgr.J01110 Eucalyptus grandis HOM05D005690 ORTHO05D007075 9.8e-61 237.7 188 60.6
CSS0000246 Camellia sinensis var. sinensis HOM05D005690 ORTHO05D007075 5.8e-53 211.8 142 73.2
Peaxi162Scf00108g00173 Petunia axillaris HOM05D005690 ORTHO05D007075 2.7e-50 203.0 121 78.5
Sc06g0001780 Simmondsia chinensis HOM05D005690 ORTHO05D007075 1.9e-48 196.8 120 78.3
CiPaw.01G275500 Carya illinoinensis HOM05D005690 ORTHO05D007075 6.2e-47 191.8 199 52.8
Lj8C97T4 Lonicera japonica HOM05D005690 ORTHO05D007075 6.2e-47 191.8 121 74.4
AagrBONN_evm.TU.Sc2ySwM_362.1612 Anthoceros agrestis HOM05D005690 ORTHO05D007075 5.8e-45 185.3 178 52.2
Psat1g099440 Pisum sativum HOM05D005690 ORTHO05D007075 1.1e-43 181.0 165 60.0
BcaB01g03882 Brassica carinata HOM05D005690 ORTHO05D007075 4.6e-42 175.6 111 72.1
Mapoly0033s0041 Marchantia polymorpha HOM05D005690 ORTHO05D007075 3.9e-41 172.6 185 44.9
Nitab4.5_0003072g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 5.1e-41 172.2 185 49.7
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 3.4e-37 159.5 197 45.7
Pp3c10_15170 Physcomitrium patens HOM05D005690 ORTHO05D007075 2.9e-36 156.4 188 42.6
Mapoly0033s0042 Marchantia polymorpha HOM05D005690 ORTHO05D007075 1.6e-34 150.6 198 39.4
CDE07G0610 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 1.7e-33 147.1 247 43.7
SMO239G0063 Selaginella moellendorffii HOM05D005690 ORTHO05D007075 6.0e-26 122.1 177 36.2
Lalb_Chr01g0010161 Lupinus albus HOM05D005690 ORTHO05D007075 2.1e-23 113.6 68 76.5
Cre12.g540051 Chlamydomonas reinhardtii HOM05D005690 ORTHO05D007075 4.3e-16 89.4 143 30.8
Lalb_Chr01g0010151 Lupinus albus HOM05D005690 ORTHO05D007075 1.0e-12 78.2 66 66.7
Nn2g10688 Nelumbo nucifera HOM05D005690 ORTHO05D007075 2.8e-07 60.1 50 68.0


User provided reference genes

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