Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G0633 Ceratophyllum demersum HOM05D000053 ORTHO05D043862 2.9e-69 265.4 165 100.0
CDE04G0135 Ceratophyllum demersum HOM05D000053 ORTHO05D043862 6.9e-34 147.9 120 87.5
CDE04G1113 Ceratophyllum demersum HOM05D000053 ORTHO05D000448 2.2e-32 142.9 138 76.8
CDE04G1453 Ceratophyllum demersum HOM05D000053 ORTHO05D000448 4.3e-20 102.1 119 71.4
TWI73G0994 Tripterygium wilfordii HOM05D000053 ORTHO05D000035 4.3e-12 75.5 110 66.4
COL.COLO4_38379 Corchorus olitorius HOM05D000053 ORTHO05D000035 2.1e-11 73.2 133 34.6
TWI34G1516 Tripterygium wilfordii HOM05D000053 ORTHO05D000035 2.1e-11 73.2 110 63.6
Thecc.07G124900 Theobroma cacao HOM05D000053 ORTHO05D000035 1.1e-10 70.9 126 34.9
Duzib268G0048 Durio zibethinus HOM05D000053 ORTHO05D000035 2.4e-10 69.7 132 30.3
Duzib268G1127 Durio zibethinus HOM05D000053 ORTHO05D000035 3.1e-10 69.3 118 31.4
Duzib268G1793 Durio zibethinus HOM05D000053 ORTHO05D000035 3.1e-10 69.3 156 28.8
GSVIVG01029712001 Vitis vinifera HOM05D000053 ORTHO05D000035 3.1e-10 69.3 110 33.6
COL.COLO4_13385 Corchorus olitorius HOM05D000053 ORTHO05D000448 9.0e-10 67.8 107 60.7
Duzib268G0770 Durio zibethinus HOM05D000053 ORTHO05D000035 9.0e-10 67.8 117 32.5
QL07p034494 Quercus lobata HOM05D000053 ORTHO05D000448 9.0e-10 67.8 130 58.5
arahy.Tifrunner.gnm1.ann1.QQT54I Arachis hypogaea HOM05D000053 ORTHO05D000035 2.6e-09 66.2 101 55.4
COL.COLO4_20209 Corchorus olitorius HOM05D000053 ORTHO05D000448 2.6e-09 66.2 114 60.5
Eucgr.A00587 Eucalyptus grandis HOM05D000053 ORTHO05D000448 2.6e-09 66.2 120 55.0
Carub.0001s0431 Capsella rubella HOM05D000053 ORTHO05D000035 5.8e-09 65.1 107 32.7
Duzib268G0774 Durio zibethinus HOM05D000053 ORTHO05D000035 5.8e-09 65.1 108 35.2
Thecc.07G159200 Theobroma cacao HOM05D000053 ORTHO05D000035 7.6e-09 64.7 121 31.4
A09p67640 Brassica napus HOM05D000053 ORTHO05D000035 1.3e-08 63.9 139 30.2
Gohir.A10G127122 Gossypium hirsutum HOM05D000053 ORTHO05D000448 1.3e-08 63.9 118 33.9
Gohir.A10G127159 Gossypium hirsutum HOM05D000053 ORTHO05D000448 1.3e-08 63.9 118 33.9
Gorai.009G367700 Gossypium raimondii HOM05D000053 ORTHO05D000035 1.3e-08 63.9 100 64.0
RcHm_v2.0_Chr5g0043081 Rosa chinensis HOM05D000053 ORTHO05D000035 1.3e-08 63.9 115 59.1
Thecc.07G111300 Theobroma cacao HOM05D000053 ORTHO05D000035 1.3e-08 63.9 107 43.9
CSS0002068 Camellia sinensis var. sinensis HOM05D000053 ORTHO05D000035 1.7e-08 63.5 94 46.8
Migut.F01625 Erythranthe guttata HOM05D000053 ORTHO05D000035 1.7e-08 63.5 110 30.9
Eucgr.F02778 Eucalyptus grandis HOM05D000053 ORTHO05D000035 1.7e-08 63.5 106 35.8
Gohir.A13G149601 Gossypium hirsutum HOM05D000053 ORTHO05D000035 1.7e-08 63.5 122 55.7
Gohir.D01G042166 Gossypium hirsutum HOM05D000053 ORTHO05D000035 1.7e-08 63.5 106 63.2
Gohir.D13G154000 Gossypium hirsutum HOM05D000053 ORTHO05D000035 1.7e-08 63.5 122 55.7
Gorai.002G052900 Gossypium raimondii HOM05D000053 ORTHO05D000035 1.7e-08 63.5 106 63.2
Thecc.07G125500 Theobroma cacao HOM05D000053 ORTHO05D000035 1.7e-08 63.5 104 34.6
Gorai.013G174000 Gossypium raimondii HOM05D000053 ORTHO05D000035 2.2e-08 63.2 122 55.7
SalBow1G8189 Salvia bowleyana HOM05D000053 ORTHO05D000010 2.9e-08 62.8 104 64.4
EL10Ac4g07576 Beta vulgaris HOM05D000053 ORTHO05D000035 3.8e-08 62.4 106 34.9
Duzib268G0914 Durio zibethinus HOM05D000053 ORTHO05D000035 3.8e-08 62.4 121 30.6
Eucgr.A00570 Eucalyptus grandis HOM05D000053 ORTHO05D000448 3.8e-08 62.4 120 54.2
Thecc.07G019900 Theobroma cacao HOM05D000053 ORTHO05D000035 3.8e-08 62.4 103 61.2
Thecc.07G020300 Theobroma cacao HOM05D000053 ORTHO05D000035 3.8e-08 62.4 119 51.3
arahy.Tifrunner.gnm1.ann1.JFW9YK Arachis hypogaea HOM05D000053 ORTHO05D000448 6.5e-08 61.6 103 36.9
CAN.G575.122 Capsicum annuum HOM05D000053 ORTHO05D000035 6.5e-08 61.6 108 36.1
Duzib268G0510 Durio zibethinus HOM05D000053 ORTHO05D000035 6.5e-08 61.6 108 33.3
Gohir.A10G127048 Gossypium hirsutum HOM05D000053 ORTHO05D000035 6.5e-08 61.6 100 35.0
Gohir.D01G042000 Gossypium hirsutum HOM05D000053 ORTHO05D000035 6.5e-08 61.6 113 59.3
Gorai.011G155400 Gossypium raimondii HOM05D000053 ORTHO05D000035 6.5e-08 61.6 100 35.0
SalBow3G2343 Salvia bowleyana HOM05D000053 ORTHO05D000448 6.5e-08 61.6 101 64.4
Thecc.07G125100 Theobroma cacao HOM05D000053 ORTHO05D000035 6.5e-08 61.6 104 57.7
BcaC02g09387 Brassica carinata HOM05D000053 ORTHO05D000035 8.4e-08 61.2 102 34.3
C04p42070 Brassica napus HOM05D000053 ORTHO05D000035 8.4e-08 61.2 102 34.3
BolC4t25791H Brassica oleracea HOM05D000053 ORTHO05D000035 8.4e-08 61.2 102 34.3
Eucgr.I00550 Eucalyptus grandis HOM05D000053 ORTHO05D000035 1.1e-07 60.8 109 32.1
Gorai.002G052800 Gossypium raimondii HOM05D000053 ORTHO05D000035 1.1e-07 60.8 106 59.4
A04p08370 Brassica napus HOM05D000053 ORTHO05D000035 1.4e-07 60.5 102 33.3
CsaV3_6G006680 Cucumis sativus L. HOM05D000053 ORTHO05D000035 1.4e-07 60.5 107 63.6
Gohir.A04G042100 Gossypium hirsutum HOM05D000053 ORTHO05D000035 1.4e-07 60.5 101 63.4
Gorai.009G367800 Gossypium raimondii HOM05D000053 ORTHO05D000035 1.4e-07 60.5 108 33.3
Gohir.A04G042160 Gossypium hirsutum HOM05D000053 ORTHO05D000035 1.9e-07 60.1 100 55.0
Gohir.D01G042100 Gossypium hirsutum HOM05D000053 ORTHO05D000035 1.9e-07 60.1 106 59.4
Oeu018562.1 Olea europaea HOM05D000150 ORTHO05D000108 1.9e-07 60.1 111 31.5
Thecc.07G020000 Theobroma cacao HOM05D000053 ORTHO05D000035 1.9e-07 60.1 109 60.6
COL.COLO4_37423 Corchorus olitorius HOM05D000053 ORTHO05D000035 2.5e-07 59.7 113 52.2
Gorai.002G052600 Gossypium raimondii HOM05D000053 ORTHO05D000035 2.5e-07 59.7 113 58.4
SalBow3G3656 Salvia bowleyana HOM05D000053 ORTHO05D000035 2.5e-07 59.7 108 39.8
Solyc09g064670.3 Solanum lycopersicum HOM05D000053 ORTHO05D000035 2.5e-07 59.7 98 36.7
CAN.G1735.6 Capsicum annuum HOM05D000053 ORTHO05D000035 3.2e-07 59.3 106 32.1
Gohir.D05G341100 Gossypium hirsutum HOM05D000053 ORTHO05D000035 3.2e-07 59.3 100 59.0
Gohir.D10G139800 Gossypium hirsutum HOM05D000053 ORTHO05D000448 3.2e-07 59.3 100 34.0
RcHm_v2.0_Chr1g0344431 Rosa chinensis HOM05D000053 ORTHO05D000035 3.2e-07 59.3 121 28.9
Thecc.07G021200 Theobroma cacao HOM05D000053 ORTHO05D000035 3.2e-07 59.3 109 59.6
AL7G42590 Arabidopsis lyrata HOM05D000053 ORTHO05D000035 4.2e-07 58.9 109 33.0
MSTRG.26049 Avicennia marina HOM05D000053 ORTHO05D000035 4.2e-07 58.9 113 33.6
CSS0001284 Camellia sinensis var. sinensis HOM05D000053 ORTHO05D000035 4.2e-07 58.9 94 51.1
FvH4_6g40843 Fragaria vesca HOM05D000053 ORTHO05D000035 4.2e-07 58.9 118 30.5
Gohir.A01G052666 Gossypium hirsutum HOM05D000053 ORTHO05D000035 4.2e-07 58.9 141 47.5
Gohir.A04G006900 Gossypium hirsutum HOM05D000053 ORTHO05D000035 4.2e-07 58.9 157 28.0
Gohir.D05G381920 Gossypium hirsutum HOM05D000053 ORTHO05D000035 4.2e-07 58.9 139 27.3
Gorai.009G367500 Gossypium raimondii HOM05D000053 ORTHO05D000035 4.2e-07 58.9 110 59.1
GSVIVG01030338001 Vitis vinifera HOM05D000053 ORTHO05D000448 4.2e-07 58.9 105 40.0
AL7G42710 Arabidopsis lyrata HOM05D000053 ORTHO05D000035 5.5e-07 58.5 112 30.4
C06p24180 Brassica napus HOM05D000053 ORTHO05D000035 5.5e-07 58.5 97 36.1
BraA10t42633Z Brassica rapa HOM05D000053 ORTHO05D000035 5.5e-07 58.5 127 26.8
Thecc.07G158900 Theobroma cacao HOM05D000053 ORTHO05D000035 5.5e-07 58.5 102 60.8
Carub.0003s2328 Capsella rubella HOM05D000053 ORTHO05D000035 7.1e-07 58.2 116 31.9
Thhalv10024378m.g Eutrema salsugineum HOM05D000053 ORTHO05D000035 7.1e-07 58.2 102 33.3
FAN13G2068 Fragaria x ananassa HOM05D000053 ORTHO05D000448 7.1e-07 58.2 147 27.9
Gohir.D01G042742 Gossypium hirsutum HOM05D000053 ORTHO05D000035 7.1e-07 58.2 105 33.3
Gorai.002G060400 Gossypium raimondii HOM05D000053 ORTHO05D000035 7.1e-07 58.2 105 33.3
Sopen12g004660 Solanum pennellii HOM05D000524 ORTHO05D000381 7.1e-07 58.2 114 58.8
BraA04t16523Z Brassica rapa HOM05D000053 ORTHO05D000035 9.3e-07 57.8 102 32.4
CARHR219720 Cardamine hirsuta HOM05D000053 ORTHO05D000035 9.3e-07 57.8 101 32.7
Duzib093G1648 Durio zibethinus HOM05D000053 ORTHO05D000035 9.3e-07 57.8 117 29.1
Gohir.A04G042200 Gossypium hirsutum HOM05D000053 ORTHO05D000035 9.3e-07 57.8 110 59.1
Gohir.D01G042734 Gossypium hirsutum HOM05D000053 ORTHO05D000035 9.3e-07 57.8 105 33.3
Sopen12g004510 Solanum pennellii HOM05D000053 ORTHO05D000035 9.3e-07 57.8 130 32.3
TPR.G1240 Trifolium pratense HOM05D000053 ORTHO05D000035 9.3e-07 57.8 124 41.1
arahy.Tifrunner.gnm1.ann1.HPT1MM Arachis hypogaea HOM05D000053 ORTHO05D000035 1.2e-06 57.4 109 53.2
EL10Ac4g07577 Beta vulgaris HOM05D000053 ORTHO05D000035 1.2e-06 57.4 102 56.9
EL10Ac4g07579 Beta vulgaris HOM05D000053 ORTHO05D000035 1.2e-06 57.4 106 33.0
FAN09G4760 Fragaria x ananassa HOM05D000053 ORTHO05D000448 1.2e-06 57.4 115 37.4
Os04g0480500 Oryza sativa ssp. japonica HOM05D000053 ORTHO05D000448 1.2e-06 57.4 111 32.4
Phvul.008G277310 Phaseolus vulgaris HOM05D000053 ORTHO05D000035 1.2e-06 57.4 132 47.7
Phvul.008G281000 Phaseolus vulgaris HOM05D000053 ORTHO05D000035 1.2e-06 57.4 115 47.8
PGR102G2428 Punica granatum HOM05D000053 ORTHO05D000035 1.2e-06 57.4 103 55.3
TPR.G14308 Trifolium pratense HOM05D000053 ORTHO05D000448 1.2e-06 57.4 162 27.2
BcaC05g24416 Brassica carinata HOM05D000053 ORTHO05D000035 1.6e-06 57.0 124 51.6
C08p31190 Brassica napus HOM05D000053 ORTHO05D000035 1.6e-06 57.0 130 30.0
Duzib138G1249 Durio zibethinus HOM05D000053 ORTHO05D000035 1.6e-06 57.0 110 32.7
Thhalv10027576m.g Eutrema salsugineum HOM05D000053 ORTHO05D000035 1.6e-06 57.0 119 31.1
Nitab4.5_0003514g0080 Nicotiana tabacum HOM05D000053 ORTHO05D000448 1.6e-06 57.0 110 40.9
arahy.Tifrunner.gnm1.ann1.L85DV8 Arachis hypogaea HOM05D000053 ORTHO05D000035 2.1e-06 56.6 101 56.4
Ciclev10018328m.g Citrus clementina HOM05D000053 ORTHO05D000035 2.1e-06 56.6 109 31.2
Gohir.D01G042736 Gossypium hirsutum HOM05D000053 ORTHO05D000035 2.1e-06 56.6 101 34.7
PGR083G0629 Punica granatum HOM05D000053 ORTHO05D000035 2.1e-06 56.6 101 58.4
Thecc.07G004300 Theobroma cacao HOM05D000053 ORTHO05D000035 2.1e-06 56.6 111 30.6
Thecc.07G004400 Theobroma cacao HOM05D000053 ORTHO05D000035 2.1e-06 56.6 140 30.0
TPR.G31831 Trifolium pratense HOM05D000053 ORTHO05D000035 2.1e-06 56.6 102 32.4
COL.COLO4_33294 Corchorus olitorius HOM05D000053 ORTHO05D000448 2.7e-06 56.2 107 62.6
FAN09G0495 Fragaria x ananassa HOM05D000053 ORTHO05D000448 2.7e-06 56.2 129 30.2
FAN09G4118 Fragaria x ananassa HOM05D000053 ORTHO05D000448 2.7e-06 56.2 103 35.9
Gohir.A04G006780 Gossypium hirsutum HOM05D000053 ORTHO05D000035 2.7e-06 56.2 128 29.7
Gohir.A04G042180 Gossypium hirsutum HOM05D000053 ORTHO05D000035 2.7e-06 56.2 108 59.3
Gohir.D10G138720 Gossypium hirsutum HOM05D000053 ORTHO05D000035 2.7e-06 56.2 100 33.0
Gorai.002G060300 Gossypium raimondii HOM05D000053 ORTHO05D000035 2.7e-06 56.2 101 34.7
PGSC0003DMG402002888 Solanum tuberosum HOM05D000053 ORTHO05D000035 2.7e-06 56.2 130 31.5
arahy.Tifrunner.gnm1.ann1.V485GG Arachis hypogaea HOM05D000053 ORTHO05D000035 3.5e-06 55.8 121 43.8
C04p57500 Brassica napus HOM05D000053 ORTHO05D000035 3.5e-06 55.8 109 31.2
BolC8t52731H Brassica oleracea HOM05D000053 ORTHO05D000035 3.5e-06 55.8 83 37.3
Gohir.A01G054566 Gossypium hirsutum HOM05D000053 ORTHO05D000035 3.5e-06 55.8 119 30.3
Gohir.D01G042232 Gossypium hirsutum HOM05D000053 ORTHO05D000035 3.5e-06 55.8 96 67.7
Manes.10G026700 Manihot esculenta HOM05D000053 ORTHO05D000035 3.5e-06 55.8 101 33.7
Solyc01g009690.3 Solanum lycopersicum HOM05D000053 ORTHO05D000035 3.5e-06 55.8 104 63.5
Thecc.07G004700 Theobroma cacao HOM05D000053 ORTHO05D000035 3.5e-06 55.8 122 31.1
Thecc.07G124400 Theobroma cacao HOM05D000053 ORTHO05D000035 3.5e-06 55.8 113 32.7
A04p08350 Brassica napus HOM05D000053 ORTHO05D000035 4.6e-06 55.5 133 30.8
BraA09t42096Z Brassica rapa HOM05D000053 ORTHO05D000035 4.6e-06 55.5 81 35.8
CAN.G551.88 Capsicum annuum HOM05D000053 ORTHO05D000035 4.6e-06 55.5 129 28.7
Potri.011G021216 Populus trichocarpa HOM05D000053 ORTHO05D000035 4.6e-06 55.5 107 28.0
PGR014G0001 Punica granatum HOM05D000053 ORTHO05D000035 4.6e-06 55.5 101 60.4
TPR.G1245 Trifolium pratense HOM05D000053 ORTHO05D000035 4.6e-06 55.5 116 59.5
arahy.Tifrunner.gnm1.ann1.18C3F6 Arachis hypogaea HOM05D000053 ORTHO05D000035 6.0e-06 55.1 104 33.7
MSTRG.358 Avicennia marina HOM05D000053 ORTHO05D000035 6.0e-06 55.1 90 34.4
BcaNung00360 Brassica carinata HOM05D000053 ORTHO05D000035 6.0e-06 55.1 109 58.7
A01p23090 Brassica napus HOM05D000053 ORTHO05D000035 6.0e-06 55.1 152 27.6
C08p52000 Brassica napus HOM05D000053 ORTHO05D000035 6.0e-06 55.1 81 34.6
CARHR219800 Cardamine hirsuta HOM05D000053 ORTHO05D000035 6.0e-06 55.1 110 42.7
PGR083G1115 Punica granatum HOM05D000053 ORTHO05D000035 6.0e-06 55.1 117 55.6
QL03p010867 Quercus lobata HOM05D000053 ORTHO05D000035 6.0e-06 55.1 107 31.8
RcHm_v2.0_Chr2g0155091 Rosa chinensis HOM05D000053 ORTHO05D000035 6.0e-06 55.1 117 29.9
Thecc.07G124000 Theobroma cacao HOM05D000053 ORTHO05D000035 6.0e-06 55.1 113 31.9
Zm00001eb239020 Zea mays HOM05D000053 ORTHO05D000035 6.0e-06 55.1 125 46.4
arahy.Tifrunner.gnm1.ann1.WNWA62 Arachis hypogaea HOM05D000053 ORTHO05D000035 7.9e-06 54.7 109 53.2
BraA09t42094Z Brassica rapa HOM05D000053 ORTHO05D000035 7.9e-06 54.7 104 27.9
Ciclev10017812m.g Citrus clementina HOM05D000053 ORTHO05D000035 7.9e-06 54.7 129 27.1
Ciclev10024804m.g Citrus clementina HOM05D000053 ORTHO05D000448 7.9e-06 54.7 110 57.3
Gohir.A01G054900 Gossypium hirsutum HOM05D000053 ORTHO05D000035 7.9e-06 54.7 100 34.0
Gorai.005G029400 Gossypium raimondii HOM05D000053 ORTHO05D000448 7.9e-06 54.7 113 31.9
Gorai.009G448900 Gossypium raimondii HOM05D000053 ORTHO05D000035 7.9e-06 54.7 113 30.1
Solyc12g099980.3 Solanum lycopersicum HOM05D000053 ORTHO05D000035 7.9e-06 54.7 100 34.0
PGSC0003DMG400002885 Solanum tuberosum HOM05D000053 ORTHO05D000035 7.9e-06 54.7 140 50.0
TPR.G2932 Trifolium pratense HOM05D000053 ORTHO05D000035 7.9e-06 54.7 121 52.9


User provided reference genes

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