Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G0629 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 4.0e-204 714.5 361 100.0
PSO170G5246 Papaver somniferum HOM05D004986 ORTHO05D005898 1.4e-87 327.4 410 47.3
Aqoxy6G01559 Aquilegia oxysepala HOM05D004986 ORTHO05D005898 6.9e-87 325.1 413 45.0
TAR628G0962 Trochodendron aralioides HOM05D004986 ORTHO05D005898 1.2e-83 314.3 404 48.3
Os04g0584800 Oryza sativa ssp. japonica HOM05D004986 ORTHO05D005898 3.3e-81 306.2 420 43.8
TAR381G0383 Trochodendron aralioides HOM05D004986 ORTHO05D005898 2.1e-80 303.5 397 46.6
Actinidia32993 Actinidia chinensis HOM05D004986 ORTHO05D005898 8.1e-80 301.6 407 43.5
Cfa007104 Carpinus fangiana HOM05D004986 ORTHO05D005898 1.4e-79 300.8 413 45.0
Lsat_1_v5_gn_2_73561 Lactuca sativa HOM05D004986 ORTHO05D005898 1.4e-79 300.8 392 46.7
Nitab4.5_0004269g0070 Nicotiana tabacum HOM05D004986 ORTHO05D005898 1.8e-79 300.4 399 44.9
Manes.02G115500 Manihot esculenta HOM05D004986 ORTHO05D005898 2.4e-79 300.1 411 43.3
Atru.chr10.1816 Acer truncatum HOM05D004986 ORTHO05D005898 3.1e-79 299.7 412 44.9
Actinidia22885 Actinidia chinensis HOM05D004986 ORTHO05D005898 9.0e-79 298.1 404 43.6
GSVIVG01022308001 Vitis vinifera HOM05D004986 ORTHO05D005898 9.0e-79 298.1 401 45.6
Rhsim10G0191900 Rhododendron simsii HOM05D004986 ORTHO05D005898 1.2e-78 297.7 404 43.3
TWI53G0851 Tripterygium wilfordii HOM05D004986 ORTHO05D005898 1.5e-78 297.4 396 44.2
DCAR_024399 Daucus carota HOM05D004986 ORTHO05D005898 2.6e-78 296.6 409 43.8
Atru.chr10.1831 Acer truncatum HOM05D004986 ORTHO05D005898 3.4e-78 296.2 408 45.1
QL11p035166 Quercus lobata HOM05D004986 ORTHO05D005898 4.5e-78 295.8 406 43.1
CSS0007723 Camellia sinensis var. sinensis HOM05D004986 ORTHO05D005898 7.6e-78 295.0 400 43.2
CDE07G1230 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 7.6e-78 295.0 281 57.3
Zm00001eb072790 Zea mays HOM05D004986 ORTHO05D005898 1.3e-77 294.3 409 41.3
Dinv28304 Davidia involucrata HOM05D004986 ORTHO05D005898 2.9e-77 293.1 403 44.7
Nn5g31026 Nelumbo nucifera HOM05D004986 ORTHO05D005898 3.8e-77 292.7 459 42.3
HPP92_007280 Vanilla planifolia HOM05D004986 ORTHO05D005898 3.8e-77 292.7 401 44.1
Hma1.2p1_0085F.1_g044450 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 6.4e-77 292.0 406 44.6
Nitab4.5_0000495g0010 Nicotiana tabacum HOM05D004986 ORTHO05D005898 1.1e-76 291.2 398 43.7
CiPaw.07G000800 Carya illinoinensis HOM05D004986 ORTHO05D005898 1.4e-76 290.8 399 44.6
Ciclev10025602m.g Citrus clementina HOM05D004986 ORTHO05D005898 1.4e-76 290.8 407 43.7
Lalb_Chr05g0214931 Lupinus albus HOM05D004986 ORTHO05D005898 1.4e-76 290.8 405 43.7
Manes.01G157000 Manihot esculenta HOM05D004986 ORTHO05D005898 1.9e-76 290.4 407 43.2
RcHm_v2.0_Chr2g0096901 Rosa chinensis HOM05D004986 ORTHO05D005898 4.2e-76 289.3 410 42.7
CAN.G647.4 Capsicum annuum HOM05D004986 ORTHO05D005898 5.4e-76 288.9 404 44.3
Cc07_g12070 Coffea canephora HOM05D004986 ORTHO05D005898 7.1e-76 288.5 407 43.0
Prupe.7G185600 Prunus persica HOM05D004986 ORTHO05D005898 2.1e-75 287.0 412 42.5
FAN23G2177 Fragaria x ananassa HOM05D004986 ORTHO05D005898 4.6e-75 285.8 405 43.5
Peaxi162Scf00920g00114 Petunia axillaris HOM05D004986 ORTHO05D005898 4.6e-75 285.8 402 43.5
Psat4g105800 Pisum sativum HOM05D004986 ORTHO05D005898 4.6e-75 285.8 395 43.8
Lj3g0020964 Lotus japonicus HOM05D004986 ORTHO05D005898 6.0e-75 285.4 398 44.0
Solyc03g032050.4 Solanum lycopersicum HOM05D004986 ORTHO05D005898 6.0e-75 285.4 404 44.3
Sopen03g005900 Solanum pennellii HOM05D004986 ORTHO05D005898 6.0e-75 285.4 404 44.1
CANSAT21G0416 Cannabis sativa HOM05D004986 ORTHO05D005898 1.8e-74 283.9 402 44.0
Cpa.g.sc91.49 Carica papaya HOM05D004986 ORTHO05D005898 2.3e-74 283.5 402 43.5
HanXRQChr10g0316221 Helianthus annuus HOM05D004986 ORTHO05D005898 2.3e-74 283.5 392 44.6
Carub.0008s2856 Capsella rubella HOM05D004986 ORTHO05D005898 3.0e-74 283.1 402 42.3
Migut.B01487 Erythranthe guttata HOM05D004986 ORTHO05D005898 3.9e-74 282.7 397 43.8
MBI13_g20494_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 5.1e-74 282.3 451 41.7
PGSC0003DMG400018667 Solanum tuberosum HOM05D004986 ORTHO05D005898 5.1e-74 282.3 404 43.6
FvH4_1g10130 Fragaria vesca HOM05D004986 ORTHO05D005898 6.7e-74 282.0 405 42.0
FAN23G1121 Fragaria x ananassa HOM05D004986 ORTHO05D005898 8.7e-74 281.6 405 42.0
MSTRG.17107 Avicennia marina HOM05D004986 ORTHO05D005898 1.5e-73 280.8 417 41.7
Oeu002901.1 Olea europaea HOM05D004986 ORTHO05D005898 1.5e-73 280.8 410 41.2
arahy.Tifrunner.gnm1.ann1.H550X0 Arachis hypogaea HOM05D004986 ORTHO05D005898 1.9e-73 280.4 390 42.3
Glyma.16G112300 Glycine max HOM05D004986 ORTHO05D005898 1.9e-73 280.4 403 42.2
Hund21384 Selenicereus undatus HOM05D004986 ORTHO05D005898 3.3e-73 279.6 407 42.5
FAN19G1207 Fragaria x ananassa HOM05D004986 ORTHO05D005898 4.3e-73 279.3 405 41.7
MD15G1228500 Malus domestica HOM05D004986 ORTHO05D005898 5.6e-73 278.9 402 42.0
Sed0027663 Sechium edule HOM05D004986 ORTHO05D005898 7.4e-73 278.5 413 43.1
ECA240G4103 Erigeron canadensis HOM05D004986 ORTHO05D005898 9.6e-73 278.1 390 45.1
FAN26G2552 Fragaria x ananassa HOM05D004986 ORTHO05D005898 2.8e-72 276.6 404 41.1
FAN28G2129 Fragaria x ananassa HOM05D004986 ORTHO05D005898 2.8e-72 276.6 404 41.1
Phvul.010G020700 Phaseolus vulgaris HOM05D004986 ORTHO05D005898 2.8e-72 276.6 401 42.1
AL8G45680 Arabidopsis lyrata HOM05D004986 ORTHO05D005898 4.8e-72 275.8 407 41.8
PGR119G1257 Punica granatum HOM05D004986 ORTHO05D005898 6.2e-72 275.4 407 41.0
Eucgr.I02210 Eucalyptus grandis HOM05D004986 ORTHO05D005898 1.4e-71 274.2 409 43.5
AT5G65960 Arabidopsis thaliana HOM05D004986 ORTHO05D005898 1.8e-71 273.9 401 41.4
CARHR257450 Cardamine hirsuta HOM05D004986 ORTHO05D005898 1.8e-71 273.9 396 43.2
Glyma.09G196600 Glycine max HOM05D004986 ORTHO05D005898 1.8e-71 273.9 401 42.6
Aa31LG1G14460 Aethionema arabicum HOM05D004986 ORTHO05D005898 3.1e-71 273.1 391 42.2
Medtr8g073110 Medicago truncatula HOM05D004986 ORTHO05D005898 3.1e-71 273.1 401 42.6
Ca_02840_v3 Cicer arietinum L. HOM05D004986 ORTHO05D005898 1.2e-70 271.2 398 43.5
Haze_03636 Corylus avellana HOM05D004986 ORTHO05D005898 1.2e-70 271.2 449 40.1
SalBow5G3763 Salvia bowleyana HOM05D004986 ORTHO05D005898 3.4e-70 269.6 405 41.2
ClCG04G005010 Citrullus lanatus HOM05D004986 ORTHO05D005898 5.8e-70 268.9 400 42.0
Sp2g30730 Schrenkiella parvula HOM05D004986 ORTHO05D005898 7.6e-70 268.5 407 41.0
THA.LOC104826450 Tarenaya hassleriana HOM05D004986 ORTHO05D005898 1.3e-69 267.7 391 43.2
VMungo0331G1669 Vigna mungo HOM05D004986 ORTHO05D005898 1.3e-69 267.7 400 40.8
Thecc.01G002600 Theobroma cacao HOM05D004986 ORTHO05D005898 3.8e-69 266.2 412 40.8
CsaV3_4G027660 Cucumis sativus L. HOM05D004986 ORTHO05D005898 1.4e-68 264.2 404 40.8
Gohir.A02G055800 Gossypium hirsutum HOM05D004986 ORTHO05D005898 5.5e-68 262.3 411 41.1
EL10Ac3g05234 Beta vulgaris HOM05D004986 ORTHO05D005898 7.1e-68 261.9 395 42.3
Gorai.005G068600 Gossypium raimondii HOM05D004986 ORTHO05D005898 7.1e-68 261.9 411 40.9
Thhalv10004346m.g Eutrema salsugineum HOM05D004986 ORTHO05D005898 9.3e-68 261.5 416 40.4
arahy.Tifrunner.gnm1.ann1.UZ6AL0 Arachis hypogaea HOM05D004986 ORTHO05D005898 1.6e-67 260.8 417 39.8
MELO3C026343.2 Cucumis melo HOM05D004986 ORTHO05D005898 3.5e-67 259.6 403 42.4
Duzib106G1274 Durio zibethinus HOM05D004986 ORTHO05D005898 4.6e-67 259.2 411 39.2
Gohir.D02G061000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 3.0e-66 256.5 411 40.4
Gohir.A02G179000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 6.7e-66 255.4 418 39.2
ATR0807G113 Amborella trichopoda HOM05D004986 ORTHO05D005898 8.7e-66 255.0 452 37.6
A09p10240 Brassica napus HOM05D004986 ORTHO05D005898 1.5e-65 254.2 407 40.3
Sabra02G0136200 Salix brachista HOM05D004986 ORTHO05D005898 1.9e-65 253.8 410 42.0
Gohir.D03G000700 Gossypium hirsutum HOM05D004986 ORTHO05D005898 4.3e-65 252.7 417 39.3
Ah.10g026930 Amaranthus hybridus HOM05D004986 ORTHO05D005898 9.6e-65 251.5 392 40.8
Gorai.003G001100 Gossypium raimondii HOM05D004986 ORTHO05D005898 2.8e-64 250.0 411 39.2
SGA_v2.0_scaffold52G19267 Striga asiatica HOM05D004986 ORTHO05D005898 1.1e-63 248.1 370 40.8
Lj2C503G0 Lonicera japonica HOM05D004986 ORTHO05D005898 2.6e-62 243.4 381 39.9
SGA_v2.0_scaffold34G13577 Striga asiatica HOM05D004986 ORTHO05D005898 2.6e-62 243.4 425 37.6
C09p12150 Brassica napus HOM05D004986 ORTHO05D005898 3.8e-61 239.6 399 39.1
BcaB04g20132 Brassica carinata HOM05D004986 ORTHO05D005898 4.9e-61 239.2 410 39.3
unitig_26.g8860 Utricularia gibba HOM05D004986 ORTHO05D005898 4.9e-61 239.2 404 38.1
BcaC04g23101 Brassica carinata HOM05D004986 ORTHO05D005898 1.4e-60 237.7 398 38.9
BolC9t54105H Brassica oleracea HOM05D004986 ORTHO05D005898 1.9e-60 237.3 398 38.9
vmacro20612 Vaccinium macrocarpon HOM05D004986 ORTHO05D005898 1.9e-60 237.3 405 38.0
BraA09t36669Z Brassica rapa HOM05D004986 ORTHO05D005898 6.7e-58 228.8 408 38.2
Mapoly0024s0125 Marchantia polymorpha HOM05D004986 ORTHO05D005898 6.7e-58 228.8 427 36.1
COL.COLO4_34271 Corchorus olitorius HOM05D004986 ORTHO05D005898 1.6e-56 224.2 368 39.4
AUR62006055 Chenopodium quinoa HOM05D004986 ORTHO05D005898 2.8e-56 223.4 391 37.6
CARHR281810 Cardamine hirsuta HOM05D004986 ORTHO05D005898 8.2e-56 221.9 260 45.8
Psat0s3210g0040 Pisum sativum HOM05D004986 ORTHO05D005898 5.9e-54 215.7 309 43.4
SEGI_13138 Sequoiadendron giganteum HOM05D004986 ORTHO05D005898 1.3e-53 214.5 405 35.1
Potri.002G177100 Populus trichocarpa HOM05D004986 ORTHO05D005898 1.9e-52 210.7 262 48.5
Pp3c17_5460 Physcomitrium patens HOM05D004986 ORTHO05D005898 3.6e-51 206.5 444 34.9
SMO147G0325 Selaginella moellendorffii HOM05D004986 ORTHO05D005898 1.8e-50 204.1 399 34.8
Sc05g0009010 Simmondsia chinensis HOM05D004986 ORTHO05D005898 1.8e-50 204.1 330 42.4
AagrBONN_evm.TU.Sc2ySwM_362.836 Anthoceros agrestis HOM05D004986 ORTHO05D005898 8.7e-50 201.8 466 34.1
Dinv40206 Davidia involucrata HOM05D004986 ORTHO05D005898 9.1e-47 191.8 267 45.3
Potri.007G064500 Populus trichocarpa HOM05D004986 ORTHO05D005898 7.7e-46 188.7 358 38.0
Hma1.2p1_0085F.1_g044460 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 5.0e-45 186.0 287 40.4
CDE04G2304 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 5.7e-41 172.6 178 59.0
Oeu037412.2 Olea europaea HOM05D004986 ORTHO05D005898 5.7e-41 172.6 400 34.2
HanXRQChr13g0388311 Helianthus annuus HOM05D004986 ORTHO05D005898 5.3e-39 166.0 223 46.6
Sed0024004 Sechium edule HOM05D004986 ORTHO05D005898 5.3e-39 166.0 246 44.3
Atru.chr3.37 Acer truncatum HOM05D004986 ORTHO05D005898 1.0e-37 161.8 363 33.9
Lj4g0017944 Lotus japonicus HOM05D004986 ORTHO05D005898 9.4e-36 155.2 326 36.5
HanXRQChr13g0388301 Helianthus annuus HOM05D004986 ORTHO05D005898 2.6e-25 120.6 166 41.6
MD02G1112100 Malus domestica HOM05D004986 ORTHO05D005898 2.6e-25 120.6 166 38.0
SGA_v2.0_scaffold578G53029 Striga asiatica HOM05D004986 ORTHO05D005898 2.2e-24 117.5 196 41.3
TPR.G33051 Trifolium pratense HOM05D004986 ORTHO05D005898 8.2e-24 115.5 89 58.4
AUR62035574 Chenopodium quinoa HOM05D004986 ORTHO05D005898 2.1e-19 100.9 149 40.3
MD02G1113000 Malus domestica HOM05D004986 ORTHO05D005898 1.8e-15 87.8 139 35.3
Atru.chr3.32 Acer truncatum HOM05D004986 ORTHO05D005898 7.0e-15 85.9 180 38.9
CBR_g24177 Chara braunii HOM05D004986 ORTHO05D005898 7.0e-15 85.9 347 24.8
MBI15_g18235_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 5.9e-14 82.8 69 58.0
MD02G1113100 Malus domestica HOM05D004986 ORTHO05D005898 2.3e-13 80.9 178 34.3
Atru.chr3.33 Acer truncatum HOM05D004986 ORTHO05D005898 5.5e-12 76.3 57 59.6
MD02G1109300 Malus domestica HOM05D004986 ORTHO05D005898 5.5e-12 76.3 89 40.4
Zm00001eb355160 Zea mays HOM05D004986 ORTHO05D005898 4.7e-11 73.2 106 40.6
Zm00001eb338840 Zea mays HOM05D004986 ORTHO05D005898 6.1e-11 72.8 106 39.6
CARHR281800 Cardamine hirsuta HOM05D004986 ORTHO05D005898 3.0e-10 70.5 52 65.4
MD02G1112300 Malus domestica HOM05D004986 ORTHO05D005898 3.0e-10 70.5 82 41.5
arahy.Tifrunner.gnm1.ann1.06FJIN Arachis hypogaea HOM05D004986 ORTHO05D005898 3.1e-07 60.5 57 56.1
arahy.Tifrunner.gnm1.ann1.757MF4 Arachis hypogaea HOM05D004986 ORTHO05D005898 3.1e-07 60.5 57 56.1


User provided reference genes

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