Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G0625 Ceratophyllum demersum HOM05D004332 ORTHO05D005116 2.3e-66 255.4 127 100.0
CDE07G0755 Ceratophyllum demersum HOM05D004332 ORTHO05D005116 5.4e-63 244.2 127 94.5
Cc01_g13020 Coffea canephora HOM05D004332 ORTHO05D005116 3.1e-50 201.8 129 72.1
TWI31G0816 Tripterygium wilfordii HOM05D004332 ORTHO05D005116 4.0e-50 201.4 129 71.3
TWI75G0441 Tripterygium wilfordii HOM05D004332 ORTHO05D005116 4.0e-50 201.4 129 72.1
TAR633G2148 Trochodendron aralioides HOM05D004332 ORTHO05D005116 9.0e-50 200.3 127 74.0
CANSAT54G0234 Cannabis sativa HOM05D004332 ORTHO05D005116 1.5e-49 199.5 128 72.7
CiPaw.13G092600 Carya illinoinensis HOM05D004332 ORTHO05D005116 1.5e-49 199.5 128 71.9
MBI05_g28381_MAGBIO Magnolia biondii HOM05D004332 ORTHO05D005116 2.0e-49 199.1 129 73.6
Manes.02G131400 Manihot esculenta HOM05D004332 ORTHO05D005116 3.4e-49 198.4 130 69.2
GSVIVG01024938001 Vitis vinifera HOM05D004332 ORTHO05D005116 3.4e-49 198.4 130 71.5
CSS0035025 Camellia sinensis var. sinensis HOM05D004332 ORTHO05D005116 4.4e-49 198.0 127 72.4
Nn2g11136 Nelumbo nucifera HOM05D004332 ORTHO05D005116 4.4e-49 198.0 128 71.9
arahy.Tifrunner.gnm1.ann1.KAW7XL Arachis hypogaea HOM05D004332 ORTHO05D005116 9.9e-49 196.8 128 71.1
Dinv04179 Davidia involucrata HOM05D004332 ORTHO05D005116 1.7e-48 196.1 131 69.5
CiPaw.14G067900 Carya illinoinensis HOM05D004332 ORTHO05D005116 2.2e-48 195.7 128 71.9
Dinv17021 Davidia involucrata HOM05D004332 ORTHO05D005116 2.2e-48 195.7 131 70.2
Dinv42969 Davidia involucrata HOM05D004332 ORTHO05D005116 2.2e-48 195.7 131 70.2
Dinv43130 Davidia involucrata HOM05D004332 ORTHO05D005116 2.2e-48 195.7 131 70.2
RcHm_v2.0_Chr5g0065351 Rosa chinensis HOM05D004332 ORTHO05D005116 2.2e-48 195.7 128 72.7
Actinidia37195 Actinidia chinensis HOM05D004332 ORTHO05D005116 4.9e-48 194.5 128 69.5
CARHR285780 Cardamine hirsuta HOM05D004332 ORTHO05D005116 4.9e-48 194.5 132 68.2
Rhsim01G0229500 Rhododendron simsii HOM05D004332 ORTHO05D005116 4.9e-48 194.5 119 75.6
HanXRQChr08g0237001 Helianthus annuus HOM05D004332 ORTHO05D005116 6.4e-48 194.1 126 73.0
Manes.01G172400 Manihot esculenta HOM05D004332 ORTHO05D005116 6.4e-48 194.1 130 66.2
MD03G1090100 Malus domestica HOM05D004332 ORTHO05D005116 8.4e-48 193.7 132 68.9
Lsat_1_v5_gn_9_23661 Lactuca sativa HOM05D004332 ORTHO05D005116 1.1e-47 193.4 126 71.4
Ciclev10029562m.g Citrus clementina HOM05D004332 ORTHO05D005116 1.4e-47 193.0 134 68.7
Prupe.6G074300 Prunus persica HOM05D004332 ORTHO05D005116 1.4e-47 193.0 133 69.2
Eucgr.J02045 Eucalyptus grandis HOM05D004332 ORTHO05D005116 1.9e-47 192.6 133 66.9
Oeu017398.1 Olea europaea HOM05D004332 ORTHO05D005116 1.9e-47 192.6 122 75.4
Carub.0008s2008 Capsella rubella HOM05D004332 ORTHO05D005116 2.4e-47 192.2 132 67.4
Lalb_Chr03g0026581 Lupinus albus HOM05D004332 ORTHO05D005116 2.4e-47 192.2 128 69.5
ECA247G3838 Erigeron canadensis HOM05D004332 ORTHO05D005116 3.2e-47 191.8 116 75.0
Glyma.11G138900 Glycine max HOM05D004332 ORTHO05D005116 3.2e-47 191.8 128 70.3
Lalb_Chr19g0137881 Lupinus albus HOM05D004332 ORTHO05D005116 3.2e-47 191.8 128 68.8
Aa31sc23G410 Aethionema arabicum HOM05D004332 ORTHO05D005116 4.2e-47 191.4 132 65.9
FAN16G1081 Fragaria x ananassa HOM05D004332 ORTHO05D005116 4.2e-47 191.4 130 70.0
QL01p031517 Quercus lobata HOM05D004332 ORTHO05D005116 4.2e-47 191.4 128 68.8
VMungo1127G1024 Vigna mungo HOM05D004332 ORTHO05D005116 4.2e-47 191.4 127 70.1
CsaV3_1G034360 Cucumis sativus L. HOM05D004332 ORTHO05D005116 5.4e-47 191.0 127 66.9
Duzib150G0187 Durio zibethinus HOM05D004332 ORTHO05D005116 5.4e-47 191.0 127 68.5
FAN25G2250 Fragaria x ananassa HOM05D004332 ORTHO05D005116 5.4e-47 191.0 130 69.2
Hund04945 Selenicereus undatus HOM05D004332 ORTHO05D005116 5.4e-47 191.0 127 70.9
FvH4_3g36490 Fragaria vesca HOM05D004332 ORTHO05D005116 7.1e-47 190.7 130 69.2
FAN11G3576 Fragaria x ananassa HOM05D004332 ORTHO05D005116 7.1e-47 190.7 130 69.2
MD11G1099700 Malus domestica HOM05D004332 ORTHO05D005116 7.1e-47 190.7 134 68.7
CSS0027892 Camellia sinensis var. sinensis HOM05D004332 ORTHO05D005116 9.3e-47 190.3 110 78.2
ATR0559G209 Amborella trichopoda HOM05D004332 ORTHO05D005116 1.2e-46 189.9 129 71.3
Actinidia34413 Actinidia chinensis HOM05D004332 ORTHO05D005116 1.6e-46 189.5 131 67.9
Migut.N00901 Erythranthe guttata HOM05D004332 ORTHO05D005116 1.6e-46 189.5 131 70.2
unitig_6.g29275 Utricularia gibba HOM05D004332 ORTHO05D005116 1.6e-46 189.5 130 69.2
unitig_747.g21434 Utricularia gibba HOM05D004332 ORTHO05D005116 1.6e-46 189.5 130 69.2
AL8G35880 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 2.1e-46 189.1 126 67.5
COL.COLO4_18528 Corchorus olitorius HOM05D004332 ORTHO05D005116 2.1e-46 189.1 126 68.3
Thhalv10015001m.g Eutrema salsugineum HOM05D004332 ORTHO05D005116 2.1e-46 189.1 132 66.7
Glyma.12G062500 Glycine max HOM05D004332 ORTHO05D005116 2.1e-46 189.1 128 68.8
Gohir.D05G095200 Gossypium hirsutum HOM05D004332 ORTHO05D005116 2.1e-46 189.1 130 67.7
SalBow2G0012 Salvia bowleyana HOM05D004332 ORTHO05D005116 2.1e-46 189.1 134 67.2
Gohir.A05G094800 Gossypium hirsutum HOM05D004332 ORTHO05D005116 2.7e-46 188.7 130 67.7
Gohir.D05G095080 Gossypium hirsutum HOM05D004332 ORTHO05D005116 2.7e-46 188.7 130 67.7
ClCG03G001410 Citrullus lanatus HOM05D004332 ORTHO05D005116 4.6e-46 188.0 128 67.2
AL146U10030 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 6.0e-46 187.6 133 66.9
Carub.0004s1001 Capsella rubella HOM05D004332 ORTHO05D005116 7.8e-46 187.2 133 67.7
Phvul.011G063600 Phaseolus vulgaris HOM05D004332 ORTHO05D005116 7.8e-46 187.2 127 70.9
PGR102G2585 Punica granatum HOM05D004332 ORTHO05D005116 7.8e-46 187.2 129 69.8
CARHR122250 Cardamine hirsuta HOM05D004332 ORTHO05D005116 1.0e-45 186.8 133 66.2
Psat5g286720 Pisum sativum HOM05D004332 ORTHO05D005116 1.0e-45 186.8 127 69.3
Potri.001G241500 Populus trichocarpa HOM05D004332 ORTHO05D005116 1.0e-45 186.8 133 66.2
SEGI_11468 Sequoiadendron giganteum HOM05D004332 ORTHO05D005116 1.0e-45 186.8 121 69.4
Aa31LG5G7210 Aethionema arabicum HOM05D004332 ORTHO05D005116 1.3e-45 186.4 133 67.7
BcaC02g11036 Brassica carinata HOM05D004332 ORTHO05D005116 1.3e-45 186.4 134 66.4
C04p21940 Brassica napus HOM05D004332 ORTHO05D005116 1.3e-45 186.4 134 66.4
BolC4t23714H Brassica oleracea HOM05D004332 ORTHO05D005116 1.3e-45 186.4 134 66.4
Gohir.A03G043200 Gossypium hirsutum HOM05D004332 ORTHO05D005116 1.3e-45 186.4 126 66.7
Sp6g21090 Schrenkiella parvula HOM05D004332 ORTHO05D005116 1.3e-45 186.4 128 66.4
Thecc.09G319900 Theobroma cacao HOM05D004332 ORTHO05D005116 1.3e-45 186.4 118 72.9
TPR.G34281 Trifolium pratense HOM05D004332 ORTHO05D005116 1.3e-45 186.4 128 69.5
AT2G29020 Arabidopsis thaliana HOM05D004332 ORTHO05D005116 1.7e-45 186.0 134 67.2
Gohir.D03G124100 Gossypium hirsutum HOM05D004332 ORTHO05D005116 1.7e-45 186.0 126 66.7
SGA_v2.0_scaffold132G34538 Striga asiatica HOM05D004332 ORTHO05D005116 1.7e-45 186.0 131 69.5
THA.LOC104814879 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 1.7e-45 186.0 129 65.1
MELO3C020622.2 Cucumis melo HOM05D004332 ORTHO05D005116 2.3e-45 185.7 128 65.6
AT5G59410 Arabidopsis thaliana HOM05D004332 ORTHO05D005116 3.0e-45 185.3 131 65.6
EL10Ac7g16034 Beta vulgaris HOM05D004332 ORTHO05D005116 3.0e-45 185.3 127 67.7
AUR62009559 Chenopodium quinoa HOM05D004332 ORTHO05D005116 3.0e-45 185.3 127 68.5
Hma1.2p1_0615F.1_g189860 Hydrangea macrophylla HOM05D004332 ORTHO05D005116 3.0e-45 185.3 128 67.2
Ah.08g219640 Amaranthus hybridus HOM05D004332 ORTHO05D005116 3.9e-45 184.9 127 66.1
Lj3g0024178 Lotus japonicus HOM05D004332 ORTHO05D005116 3.9e-45 184.9 127 69.3
Duzib168G2052 Durio zibethinus HOM05D004332 ORTHO05D005116 5.1e-45 184.5 127 66.1
Gorai.009G098500 Gossypium raimondii HOM05D004332 ORTHO05D005116 5.1e-45 184.5 130 66.9
Oeu002423.1 Olea europaea HOM05D004332 ORTHO05D005116 5.1e-45 184.5 121 71.9
Rhsim13G0081500 Rhododendron simsii HOM05D004332 ORTHO05D005116 5.1e-45 184.5 129 66.7
Oeu064111.2 Olea europaea HOM05D004332 ORTHO05D005116 6.6e-45 184.1 119 71.4
Potri.009G032100 Populus trichocarpa HOM05D004332 ORTHO05D005116 6.6e-45 184.1 134 66.4
Thhalv10017410m.g Eutrema salsugineum HOM05D004332 ORTHO05D005116 8.7e-45 183.7 133 65.4
A07p19440 Brassica napus HOM05D004332 ORTHO05D005116 1.1e-44 183.3 134 64.9
Aqoxy1G00923 Aquilegia oxysepala HOM05D004332 ORTHO05D005116 1.5e-44 183.0 112 74.1
AUR62001771 Chenopodium quinoa HOM05D004332 ORTHO05D005116 1.5e-44 183.0 127 67.7
Sabra16G0146000 Salix brachista HOM05D004332 ORTHO05D005116 1.5e-44 183.0 145 62.1
THA.LOC104800671 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 1.5e-44 183.0 132 65.2
BcaB02g10224 Brassica carinata HOM05D004332 ORTHO05D005116 1.9e-44 182.6 134 66.4
BraA07t29650Z Brassica rapa HOM05D004332 ORTHO05D005116 1.9e-44 182.6 134 64.2
Sp4g11830 Schrenkiella parvula HOM05D004332 ORTHO05D005116 2.5e-44 182.2 133 64.7
Sed0019241 Sechium edule HOM05D004332 ORTHO05D005116 2.5e-44 182.2 128 63.3
A04p21990 Brassica napus HOM05D004332 ORTHO05D005116 3.3e-44 181.8 133 64.7
CAN.G394.64 Capsicum annuum HOM05D004332 ORTHO05D005116 3.3e-44 181.8 129 67.4
BraA04t17767Z Brassica rapa HOM05D004332 ORTHO05D005116 4.3e-44 181.4 133 63.9
Gorai.003G130800 Gossypium raimondii HOM05D004332 ORTHO05D005116 4.3e-44 181.4 127 66.1
Sed0025770 Sechium edule HOM05D004332 ORTHO05D005116 4.3e-44 181.4 128 64.8
Gohir.A07G099000 Gossypium hirsutum HOM05D004332 ORTHO05D005116 5.6e-44 181.0 129 66.7
PSO151G0214 Papaver somniferum HOM05D004332 ORTHO05D005116 5.6e-44 181.0 110 70.9
PSO339G1935 Papaver somniferum HOM05D004332 ORTHO05D005116 5.6e-44 181.0 110 70.9
Sc12g0001450 Simmondsia chinensis HOM05D004332 ORTHO05D005116 5.6e-44 181.0 127 66.9
THA.LOC104826319 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 5.6e-44 181.0 133 65.4
BcaC02g08120 Brassica carinata HOM05D004332 ORTHO05D005116 7.3e-44 180.6 133 63.9
C04p58150 Brassica napus HOM05D004332 ORTHO05D005116 7.3e-44 180.6 133 63.9
BolC4t27343H Brassica oleracea HOM05D004332 ORTHO05D005116 7.3e-44 180.6 133 63.9
BcaB06g28270 Brassica carinata HOM05D004332 ORTHO05D005116 1.3e-43 179.9 133 63.2
Sc21g0005870 Simmondsia chinensis HOM05D004332 ORTHO05D005116 1.3e-43 179.9 127 65.4
Gohir.D07G103500 Gossypium hirsutum HOM05D004332 ORTHO05D005116 1.6e-43 179.5 119 69.7
THA.LOC104810775 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 2.1e-43 179.1 129 65.1
Lsat_1_v5_gn_8_73521 Lactuca sativa HOM05D004332 ORTHO05D005116 3.6e-43 178.3 109 70.6
Medtr2g097270 Medicago truncatula HOM05D004332 ORTHO05D005116 3.6e-43 178.3 127 66.9
ClCG02G020050 Citrullus lanatus HOM05D004332 ORTHO05D005116 4.8e-43 177.9 118 66.9
TAR636G3330 Trochodendron aralioides HOM05D004332 ORTHO05D005116 4.8e-43 177.9 116 70.7
Nitab4.5_0000463g0140 Nicotiana tabacum HOM05D004332 ORTHO05D005116 6.2e-43 177.6 116 73.3
Nitab4.5_0001326g0120 Nicotiana tabacum HOM05D004332 ORTHO05D005116 8.1e-43 177.2 116 73.3
arahy.Tifrunner.gnm1.ann1.WMUR0J Arachis hypogaea HOM05D004332 ORTHO05D005116 1.1e-42 176.8 115 69.6
PGSC0003DMG400030417 Solanum tuberosum HOM05D004332 ORTHO05D005116 1.4e-42 176.4 116 72.4
CsaV3_6G016760 Cucumis sativus L. HOM05D004332 ORTHO05D005116 1.8e-42 176.0 118 66.9
Solyc06g076260.3 Solanum lycopersicum HOM05D004332 ORTHO05D005116 1.8e-42 176.0 116 71.6
MELO3C025906.2 Cucumis melo HOM05D004332 ORTHO05D005116 2.4e-42 175.6 118 66.1
Sed0013921 Sechium edule HOM05D004332 ORTHO05D005116 3.1e-42 175.3 130 62.3
DCAR_018915 Daucus carota HOM05D004332 ORTHO05D005116 6.9e-42 174.1 105 73.3
vmacro14542 Vaccinium macrocarpon HOM05D004332 ORTHO05D005116 4.5e-41 171.4 107 71.0
Gorai.001G111400 Gossypium raimondii HOM05D004332 ORTHO05D005116 9.9e-41 170.2 110 70.0
Sabra09G0022800 Salix brachista HOM05D004332 ORTHO05D005116 1.3e-40 169.9 114 69.3
Atru.chr3.3947 Acer truncatum HOM05D004332 ORTHO05D005116 1.7e-40 169.5 135 63.0
arahy.Tifrunner.gnm1.ann1.TT4C38 Arachis hypogaea HOM05D004332 ORTHO05D005116 1.1e-39 166.8 125 62.4
arahy.Tifrunner.gnm1.ann1.A22IES Arachis hypogaea HOM05D004332 ORTHO05D005116 3.2e-39 165.2 126 61.9
Mapoly0045s0062 Marchantia polymorpha HOM05D004332 ORTHO05D005116 7.1e-39 164.1 115 63.5
Os05g0110600 Oryza sativa ssp. japonica HOM05D004332 ORTHO05D005116 2.1e-38 162.5 117 61.5
HanXRQChr07g0197291 Helianthus annuus HOM05D004332 ORTHO05D005116 6.7e-37 157.5 136 57.4
Zm00001eb266910 Zea mays HOM05D004332 ORTHO05D005116 7.4e-36 154.1 110 63.6
Pp3c16_16760 Physcomitrium patens HOM05D004332 ORTHO05D005116 1.3e-35 153.3 124 62.1
Nn2g13368 Nelumbo nucifera HOM05D004332 ORTHO05D005116 2.8e-35 152.1 91 74.7
SMO304G0081 Selaginella moellendorffii HOM05D004332 ORTHO05D005116 6.2e-35 151.0 118 57.6
AagrBONN_evm.TU.Sc2ySwM_228.3328 Anthoceros agrestis HOM05D004332 ORTHO05D005116 9.0e-34 147.1 103 68.9
Pp3c6_17300 Physcomitrium patens HOM05D004332 ORTHO05D005116 3.2e-31 138.7 114 58.8
Sopen06g032690 Solanum pennellii HOM05D004332 ORTHO05D005116 3.1e-26 122.1 78 71.8
Actinidia07026 Actinidia chinensis HOM05D004332 ORTHO05D005116 1.5e-25 119.8 85 68.2
Haze_24115 Corylus avellana HOM05D004332 ORTHO05D005116 3.8e-24 115.2 74 66.2
TAR369G0503 Trochodendron aralioides HOM05D004332 ORTHO05D005116 9.3e-23 110.5 72 65.3
FAN21G1178 Fragaria x ananassa HOM05D004332 ORTHO05D005116 2.1e-22 109.4 74 64.9
AL4G23580 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 6.0e-22 107.8 77 61.0
SEGI_12680 Sequoiadendron giganteum HOM05D004332 ORTHO05D005116 1.1e-20 103.6 68 61.8
vmacro03061 Vaccinium macrocarpon HOM05D004332 ORTHO05D005116 6.3e-19 97.8 72 55.6
Actinidia23932 Actinidia chinensis HOM05D004332 ORTHO05D005116 2.9e-16 89.0 60 75.0
Peaxi162Scf00774g00129 Petunia axillaris HOM05D004332 ORTHO05D005116 6.5e-16 87.8 56 76.8
SHI47893 Sapria himalayana HOM05D004332 ORTHO05D005116 1.1e-10 70.5 50 64.0
HPP92_028206 Vanilla planifolia HOM05D004332 ORTHO05D005116 1.1e-10 70.5 54 57.4
Cre08.g376000 Chlamydomonas reinhardtii HOM05D004332 ORTHO05D005116 7.7e-09 64.3 95 33.7
Eucgr.H02119 Eucalyptus grandis HOM05D004332 ORTHO05D005116 6.5e-08 61.2 62 51.6


User provided reference genes

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