Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G0570 Ceratophyllum demersum HOM05D003582 ORTHO05D130660 6.6e-142 507.3 246 100.0
CDE07G0251 Ceratophyllum demersum HOM05D003582 ORTHO05D004789 5.8e-53 211.8 212 54.2
CDE04G3698 Ceratophyllum demersum HOM05D003582 ORTHO05D004789 4.9e-52 208.8 212 53.8
CDE07G0024 Ceratophyllum demersum HOM05D003582 ORTHO05D004789 8.3e-52 208.0 212 53.8
RcHm_v2.0_Chr2g0165001 Rosa chinensis HOM05D003582 ORTHO05D004789 1.5e-48 197.2 213 50.7
Nn3g17508 Nelumbo nucifera HOM05D003582 ORTHO05D004789 2.5e-48 196.4 213 51.2
Manes.02G058750 Manihot esculenta HOM05D003582 ORTHO05D004789 3.3e-48 196.1 213 48.8
Peaxi162Scf01619g00009 Petunia axillaris HOM05D003582 ORTHO05D004789 3.3e-48 196.1 184 54.3
Nitab4.5_0001434g0060 Nicotiana tabacum HOM05D003582 ORTHO05D004789 5.6e-48 195.3 184 54.9
GSVIVG01036556001 Vitis vinifera HOM05D003582 ORTHO05D004789 9.5e-48 194.5 213 50.2
MD09G1073500 Malus domestica HOM05D003582 ORTHO05D004789 1.2e-47 194.1 213 49.8
MD17G1065000 Malus domestica HOM05D003582 ORTHO05D004789 1.2e-47 194.1 213 49.8
Nitab4.5_0006516g0040 Nicotiana tabacum HOM05D003582 ORTHO05D004789 1.2e-47 194.1 213 49.8
Phvul.004G041500 Phaseolus vulgaris HOM05D003582 ORTHO05D004789 1.2e-47 194.1 213 49.8
DCAR_025450 Daucus carota HOM05D003582 ORTHO05D004789 1.6e-47 193.7 231 46.8
Nn4g23497 Nelumbo nucifera HOM05D003582 ORTHO05D004789 1.6e-47 193.7 213 50.7
Nitab4.5_0005120g0010 Nicotiana tabacum HOM05D003582 ORTHO05D004789 1.6e-47 193.7 213 49.3
Actinidia17602 Actinidia chinensis HOM05D003582 ORTHO05D004789 2.1e-47 193.4 213 49.8
Sabra17G0085700 Salix brachista HOM05D003582 ORTHO05D004789 2.8e-47 193.0 213 49.3
Oeu021205.1 Olea europaea HOM05D003582 ORTHO05D004789 3.6e-47 192.6 213 49.8
Rhsim08G0076400 Rhododendron simsii HOM05D003582 ORTHO05D004789 3.6e-47 192.6 213 48.8
Potri.017G099200 Populus trichocarpa HOM05D003582 ORTHO05D004789 4.7e-47 192.2 213 49.3
VMungo0464G0741 Vigna mungo HOM05D003582 ORTHO05D004789 4.7e-47 192.2 213 49.3
arahy.Tifrunner.gnm1.ann1.90NIGC Arachis hypogaea HOM05D003582 ORTHO05D004789 6.2e-47 191.8 213 48.8
arahy.Tifrunner.gnm1.ann1.YPLH9H Arachis hypogaea HOM05D003582 ORTHO05D004789 6.2e-47 191.8 213 48.8
Prupe.3G249800 Prunus persica HOM05D003582 ORTHO05D004789 8.1e-47 191.4 213 48.8
Cfa007687 Carpinus fangiana HOM05D003582 ORTHO05D004789 1.1e-46 191.0 213 49.3
Lj4A122T65 Lonicera japonica HOM05D003582 ORTHO05D004789 1.1e-46 191.0 213 48.4
Lj1g0000491 Lotus japonicus HOM05D003582 ORTHO05D004789 1.1e-46 191.0 213 48.4
Duzib133G0617 Durio zibethinus HOM05D003582 ORTHO05D004789 1.4e-46 190.7 213 49.8
Eucgr.J01408 Eucalyptus grandis HOM05D003582 ORTHO05D004789 1.4e-46 190.7 213 49.3
PGR042G1977 Punica granatum HOM05D003582 ORTHO05D004789 1.4e-46 190.7 213 48.8
Sabra04G0071000 Salix brachista HOM05D003582 ORTHO05D004789 1.4e-46 190.7 213 48.4
Sed0002547 Sechium edule HOM05D003582 ORTHO05D004789 1.4e-46 190.7 213 49.3
Glyma.19G033700 Glycine max HOM05D003582 ORTHO05D004789 1.8e-46 190.3 213 48.8
TAR629G1978 Trochodendron aralioides HOM05D003582 ORTHO05D004789 2.3e-46 189.9 191 56.5
CSS0004005 Camellia sinensis var. sinensis HOM05D003582 ORTHO05D004789 3.1e-46 189.5 213 49.3
CSS0033422 Camellia sinensis var. sinensis HOM05D003582 ORTHO05D004789 3.1e-46 189.5 213 49.3
Glyma.13G053100 Glycine max HOM05D003582 ORTHO05D004789 3.1e-46 189.5 213 48.8
Potri.004G117900 Populus trichocarpa HOM05D003582 ORTHO05D004789 3.1e-46 189.5 213 48.4
ClCG11G004930 Citrullus lanatus HOM05D003582 ORTHO05D004789 5.2e-46 188.7 213 48.4
MELO3C022046.2 Cucumis melo HOM05D003582 ORTHO05D004789 5.2e-46 188.7 213 48.4
CsaV3_5G038660 Cucumis sativus L. HOM05D003582 ORTHO05D004789 5.2e-46 188.7 213 48.4
Dinv34912 Davidia involucrata HOM05D003582 ORTHO05D004789 5.2e-46 188.7 213 48.8
HanXRQChr14g0452431 Helianthus annuus HOM05D003582 ORTHO05D004789 5.2e-46 188.7 213 48.4
CAN.G497.77 Capsicum annuum HOM05D003582 ORTHO05D004789 6.8e-46 188.3 213 48.4
Cpa.g.sc14.212 Carica papaya HOM05D003582 ORTHO05D004789 6.8e-46 188.3 213 47.9
ECA238G0900 Erigeron canadensis HOM05D003582 ORTHO05D004789 6.8e-46 188.3 213 48.8
Thecc.04G104800 Theobroma cacao HOM05D003582 ORTHO05D004789 6.8e-46 188.3 213 48.8
TWI60G0725 Tripterygium wilfordii HOM05D003582 ORTHO05D004789 6.8e-46 188.3 213 47.9
TAR371G0699 Trochodendron aralioides HOM05D003582 ORTHO05D004789 6.8e-46 188.3 213 49.3
Ah.10g038150 Amaranthus hybridus HOM05D003582 ORTHO05D004789 8.9e-46 188.0 213 46.9
Gohir.D07G187100 Gossypium hirsutum HOM05D003582 ORTHO05D004789 8.9e-46 188.0 213 49.3
Gorai.001G207700 Gossypium raimondii HOM05D003582 ORTHO05D004789 8.9e-46 188.0 213 49.3
PSO017G5930 Papaver somniferum HOM05D003582 ORTHO05D004789 8.9e-46 188.0 213 47.9
Gohir.A11G159700 Gossypium hirsutum HOM05D003582 ORTHO05D004789 1.2e-45 187.6 213 48.8
Gohir.D11G165800 Gossypium hirsutum HOM05D003582 ORTHO05D004789 1.2e-45 187.6 213 48.8
Gorai.007G176800 Gossypium raimondii HOM05D003582 ORTHO05D004789 1.2e-45 187.6 213 48.8
Manes.01G103000 Manihot esculenta HOM05D003582 ORTHO05D004789 1.2e-45 187.6 213 46.9
Sed0004528 Sechium edule HOM05D003582 ORTHO05D004789 1.2e-45 187.6 213 48.8
CiPaw.03G083900 Carya illinoinensis HOM05D003582 ORTHO05D004789 1.5e-45 187.2 213 47.9
FvH4_6g46450 Fragaria vesca HOM05D003582 ORTHO05D004789 2.0e-45 186.8 213 47.9
FAN14G2787 Fragaria x ananassa HOM05D003582 ORTHO05D004789 2.0e-45 186.8 213 47.9
vmacro18132 Vaccinium macrocarpon HOM05D003582 ORTHO05D004789 2.0e-45 186.8 213 47.4
arahy.Tifrunner.gnm1.ann1.936LCP Arachis hypogaea HOM05D003582 ORTHO05D004789 2.6e-45 186.4 213 47.9
Duzib138G0134 Durio zibethinus HOM05D003582 ORTHO05D004789 2.6e-45 186.4 213 48.8
FAN05G2033 Fragaria x ananassa HOM05D003582 ORTHO05D004789 2.6e-45 186.4 213 47.4
Lalb_Chr02g0158711 Lupinus albus HOM05D003582 ORTHO05D004789 2.6e-45 186.4 213 47.4
Sc10g0000640 Simmondsia chinensis HOM05D003582 ORTHO05D004789 2.6e-45 186.4 213 48.4
Lsat_1_v5_gn_2_89661 Lactuca sativa HOM05D003582 ORTHO05D004789 3.4e-45 186.0 223 45.7
PSO478G3099 Papaver somniferum HOM05D003582 ORTHO05D004789 3.4e-45 186.0 213 47.4
HPP92_012207 Vanilla planifolia HOM05D003582 ORTHO05D004789 3.4e-45 186.0 212 48.1
HPP92_012242 Vanilla planifolia HOM05D003582 ORTHO05D004789 3.4e-45 186.0 212 48.1
Ca_20768_v3 Cicer arietinum L. HOM05D003582 ORTHO05D004789 4.4e-45 185.7 213 47.9
TWI32G0037 Tripterygium wilfordii HOM05D003582 ORTHO05D004789 4.4e-45 185.7 213 46.9
CANSAT64G2522 Cannabis sativa HOM05D003582 ORTHO05D004789 5.8e-45 185.3 214 48.1
QL02p066091 Quercus lobata HOM05D003582 ORTHO05D004789 5.8e-45 185.3 213 47.4
CARHR076300 Cardamine hirsuta HOM05D003582 ORTHO05D004789 7.5e-45 184.9 213 46.5
Cc00_g14200 Coffea canephora HOM05D003582 ORTHO05D004789 7.5e-45 184.9 213 48.4
FAN02G0181 Fragaria x ananassa HOM05D003582 ORTHO05D004789 7.5e-45 184.9 213 46.9
AT3G02320 Arabidopsis thaliana HOM05D003582 ORTHO05D004789 9.8e-45 184.5 213 46.0
Carub.0003s0143 Capsella rubella HOM05D003582 ORTHO05D004789 9.8e-45 184.5 213 46.0
Migut.H00593 Erythranthe guttata HOM05D003582 ORTHO05D004789 1.7e-44 183.7 213 48.4
Hma1.2p1_0069F.1_g037480 Hydrangea macrophylla HOM05D003582 ORTHO05D004789 1.7e-44 183.7 213 47.9
Gohir.A07G180200 Gossypium hirsutum HOM05D003582 ORTHO05D004789 2.2e-44 183.3 213 48.4
SGA_v2.0_scaffold52G19103 Striga asiatica HOM05D003582 ORTHO05D004789 2.2e-44 183.3 215 47.4
Aa31LG11G13760 Aethionema arabicum HOM05D003582 ORTHO05D004789 2.9e-44 183.0 213 46.5
AUR62009488 Chenopodium quinoa HOM05D003582 ORTHO05D004789 2.9e-44 183.0 213 46.0
Atru.chr8.571 Acer truncatum HOM05D003582 ORTHO05D004789 3.7e-44 182.6 214 48.6
BcaC09g47692 Brassica carinata HOM05D003582 ORTHO05D004789 3.7e-44 182.6 212 46.7
FAN09G2080 Fragaria x ananassa HOM05D003582 ORTHO05D004789 3.7e-44 182.6 213 46.9
arahy.Tifrunner.gnm1.ann1.3TK0C1 Arachis hypogaea HOM05D003582 ORTHO05D004789 4.9e-44 182.2 213 46.5
Lj2g0024434 Lotus japonicus HOM05D003582 ORTHO05D004789 4.9e-44 182.2 213 47.4
ATR0827G075 Amborella trichopoda HOM05D003582 ORTHO05D004789 6.4e-44 181.8 213 45.1
BolC1t05913H Brassica oleracea HOM05D003582 ORTHO05D004789 6.4e-44 181.8 223 44.4
Ah.16g101080 Amaranthus hybridus HOM05D003582 ORTHO05D004789 8.3e-44 181.4 213 45.1
SEGI_16900 Sequoiadendron giganteum HOM05D003582 ORTHO05D004789 8.3e-44 181.4 213 46.5
BcaC09g47691 Brassica carinata HOM05D003582 ORTHO05D004789 1.1e-43 181.0 213 45.5
AUR62023166 Chenopodium quinoa HOM05D003582 ORTHO05D004789 1.1e-43 181.0 213 45.5
ECA232G0785 Erigeron canadensis HOM05D003582 ORTHO05D004789 1.4e-43 180.6 212 45.8
Hund13680 Selenicereus undatus HOM05D003582 ORTHO05D004789 1.4e-43 180.6 213 46.0
AL6G26670 Arabidopsis lyrata HOM05D003582 ORTHO05D004789 2.4e-43 179.9 213 46.0
Solyc02g089175.2 Solanum lycopersicum HOM05D003582 ORTHO05D004789 2.4e-43 179.9 213 47.4
Sopen02g033970 Solanum pennellii HOM05D003582 ORTHO05D004789 2.4e-43 179.9 213 47.4
unitig_0.g556 Utricularia gibba HOM05D003582 ORTHO05D004789 2.4e-43 179.9 191 51.8
BraSC141t45620Z Brassica rapa HOM05D003582 ORTHO05D004789 3.2e-43 179.5 218 45.0
Sp3g01380 Schrenkiella parvula HOM05D003582 ORTHO05D004789 3.2e-43 179.5 213 46.0
THA.LOC104823883 Tarenaya hassleriana HOM05D003582 ORTHO05D004789 3.2e-43 179.5 213 46.5
Ciclev10011357m.g Citrus clementina HOM05D003582 ORTHO05D004789 4.1e-43 179.1 214 48.6
HanXRQChr09g0264801 Helianthus annuus HOM05D003582 ORTHO05D004789 4.1e-43 179.1 213 44.6
SalBow1G0251 Salvia bowleyana HOM05D003582 ORTHO05D004789 4.1e-43 179.1 213 46.5
SGA_v2.0_scaffold4G02360 Striga asiatica HOM05D003582 ORTHO05D004789 4.1e-43 179.1 215 46.0
TPR.G15956 Trifolium pratense HOM05D003582 ORTHO05D004789 5.4e-43 178.7 213 46.0
Aa31LG5G12860 Aethionema arabicum HOM05D003582 ORTHO05D004789 7.1e-43 178.3 215 45.1
Aqoxy3G01120 Aquilegia oxysepala HOM05D003582 ORTHO05D004789 7.1e-43 178.3 214 46.7
Nitab4.5_0000154g0240 Nicotiana tabacum HOM05D003582 ORTHO05D004789 7.1e-43 178.3 213 45.1
PGSC0003DMG400001466 Solanum tuberosum HOM05D003582 ORTHO05D004789 9.2e-43 177.9 213 46.5
AL3G11610 Arabidopsis lyrata HOM05D003582 ORTHO05D004789 1.2e-42 177.6 213 44.6
Carub.0006s1397 Capsella rubella HOM05D003582 ORTHO05D004789 1.2e-42 177.6 213 45.5
HanXRQChr15g0489031 Helianthus annuus HOM05D003582 ORTHO05D004789 1.2e-42 177.6 213 45.1
AT5G15810 Arabidopsis thaliana HOM05D003582 ORTHO05D004789 2.1e-42 176.8 213 45.5
Aqoxy7G03254 Aquilegia oxysepala HOM05D003582 ORTHO05D004789 2.7e-42 176.4 214 45.3
CDE01G0712 Ceratophyllum demersum HOM05D003582 ORTHO05D004789 4.6e-42 175.6 141 64.5
Os03g0786700 Oryza sativa ssp. japonica HOM05D003582 ORTHO05D004789 4.6e-42 175.6 213 44.1
CARHR197510 Cardamine hirsuta HOM05D003582 ORTHO05D004789 6.0e-42 175.3 213 45.1
Migut.O00385 Erythranthe guttata HOM05D003582 ORTHO05D004789 1.0e-41 174.5 220 44.5
Thhalv10013036m.g Eutrema salsugineum HOM05D003582 ORTHO05D004789 1.0e-41 174.5 213 45.1
Psat1g066040 Pisum sativum HOM05D003582 ORTHO05D004789 1.7e-41 173.7 213 45.1
A10p23210 Brassica napus HOM05D003582 ORTHO05D004789 3.0e-41 172.9 213 44.6
BraA10t44389Z Brassica rapa HOM05D003582 ORTHO05D004789 3.0e-41 172.9 213 44.6
THA.LOC104802987 Tarenaya hassleriana HOM05D003582 ORTHO05D004789 3.0e-41 172.9 213 44.6
C09p61260 Brassica napus HOM05D003582 ORTHO05D004789 5.1e-41 172.2 213 44.1
BcaB08g36862 Brassica carinata HOM05D003582 ORTHO05D004789 6.6e-41 171.8 213 44.1
EL10Ac2g04447 Beta vulgaris HOM05D003582 ORTHO05D004789 8.6e-41 171.4 214 45.3
Sp6g28300 Schrenkiella parvula HOM05D003582 ORTHO05D004789 8.6e-41 171.4 213 43.7
THA.LOC104827143 Tarenaya hassleriana HOM05D003582 ORTHO05D004789 1.5e-40 170.6 213 44.6
BcaC04g18934 Brassica carinata HOM05D003582 ORTHO05D004789 1.9e-40 170.2 213 43.7
BolC9t58968H Brassica oleracea HOM05D003582 ORTHO05D004789 1.9e-40 170.2 213 43.7
MBI16_g37884_MAGBIO Magnolia biondii HOM05D003582 ORTHO05D004789 1.9e-40 170.2 191 49.7
C03p08560 Brassica napus HOM05D003582 ORTHO05D004789 2.5e-40 169.9 213 43.7
BolC3t13361H Brassica oleracea HOM05D003582 ORTHO05D004789 2.5e-40 169.9 213 43.7
Medtr6g015885 Medicago truncatula HOM05D003582 ORTHO05D004789 2.5e-40 169.9 213 43.7
A03p07370 Brassica napus HOM05D003582 ORTHO05D004789 3.3e-40 169.5 213 43.7
BcaB01g05025 Brassica carinata HOM05D003582 ORTHO05D004789 1.2e-39 167.5 213 43.2
BraA03t10061Z Brassica rapa HOM05D003582 ORTHO05D004789 1.2e-39 167.5 213 43.2
Zm00001eb061890 Zea mays HOM05D003582 ORTHO05D004789 2.1e-39 166.8 214 43.0
SMO203G0237 Selaginella moellendorffii HOM05D003582 ORTHO05D004789 2.6e-37 159.8 213 40.8
AagrBONN_evm.TU.Sc2ySwM_344.1885 Anthoceros agrestis HOM05D003582 ORTHO05D004789 5.8e-37 158.7 214 39.7
CBR_g3723 Chara braunii HOM05D003582 ORTHO05D004789 4.9e-36 155.6 213 39.4
Haze_14390 Corylus avellana HOM05D003582 ORTHO05D004789 3.2e-35 152.9 308 34.7
COL.COLO4_08945 Corchorus olitorius HOM05D003582 ORTHO05D004789 2.7e-34 149.8 217 43.3
Pp3c16_12880 Physcomitrium patens HOM05D003582 ORTHO05D004789 1.7e-33 147.1 213 36.6
Mapoly0103s0023 Marchantia polymorpha HOM05D003582 ORTHO05D004789 3.0e-33 146.4 216 37.5
Peaxi162Scf00166g00210 Petunia axillaris HOM05D003582 ORTHO05D004789 1.5e-32 144.1 99 67.7
Hma1.2p1_1502F.1_g287410 Hydrangea macrophylla HOM05D003582 ORTHO05D022453 2.8e-31 139.8 133 55.6
Hma1.2p1_2026F.1_g311626 Hydrangea macrophylla HOM05D003582 ORTHO05D022453 2.8e-31 139.8 133 55.6
MCO10G029 Micromonas commoda HOM05D003582 ORTHO05D004789 3.1e-30 136.3 221 36.7
BNapus_Darmor_BZH_scaffold_208p00140 Brassica napus HOM05D003582 ORTHO05D004789 4.0e-30 136.0 113 57.5
Oeu004424.1 Olea europaea HOM05D003582 ORTHO05D004789 2.4e-27 126.7 164 48.2
DCAR_011024 Daucus carota HOM05D003582 ORTHO05D004789 9.3e-27 124.8 165 44.8
Solyc03g070400.3 Solanum lycopersicum HOM05D003582 ORTHO05D004789 2.1e-26 123.6 99 57.6
Os10g0357800 Oryza sativa ssp. japonica HOM05D003582 ORTHO05D004789 2.7e-26 123.2 213 33.3
Zm00001eb012220 Zea mays HOM05D003582 ORTHO05D004789 1.5e-24 117.5 100 55.0
Zm00001eb230770 Zea mays HOM05D003582 ORTHO05D004789 9.6e-24 114.8 213 31.5
Actinidia26267 Actinidia chinensis HOM05D003582 ORTHO05D004789 8.1e-23 111.7 213 36.2
PRCOL_00005295 Prasinoderma coloniale HOM05D003582 ORTHO05D004789 2.6e-21 106.7 226 33.6
Sopen03g019090 Solanum pennellii HOM05D003582 ORTHO05D004789 2.7e-18 96.7 174 36.2
Cre10.g422000 Chlamydomonas reinhardtii HOM05D003582 ORTHO05D004789 1.8e-14 84.0 217 31.3
PGSC0003DMG402007649 Solanum tuberosum HOM05D003582 ORTHO05D004789 4.5e-13 79.3 45 77.8
Nn3g17509 Nelumbo nucifera HOM05D003582 ORTHO05D004789 3.8e-12 76.3 43 81.4
Dinv33857 Davidia involucrata HOM05D003582 ORTHO05D004789 4.9e-12 75.9 43 79.1
PGSC0003DMG401007649 Solanum tuberosum HOM05D003582 ORTHO05D004789 1.1e-11 74.7 43 79.1
arahy.Tifrunner.gnm1.ann1.DBFW6U Arachis hypogaea HOM05D001801 ORTHO05D001739 5.5e-11 72.4 44 79.5
Oeu021203.1 Olea europaea HOM05D000526 ORTHO05D000956 2.8e-07 60.1 85 40.0
Hma1.2p1_1502F.1_g287380 Hydrangea macrophylla HOM05D003582 ORTHO05D228296 4.0e-06 56.2 54 55.6


User provided reference genes

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