Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G0567 Ceratophyllum demersum HOM05D002753 ORTHO05D003097 9.6e-36 152.9 74 100.0
CDE06G1140 Ceratophyllum demersum HOM05D002753 ORTHO05D003097 4.0e-18 94.4 66 69.7
TAR376G1183 Trochodendron aralioides HOM05D002753 ORTHO05D003097 3.0e-13 78.2 49 69.4
TAR376G0119 Trochodendron aralioides HOM05D002753 ORTHO05D003097 7.4e-12 73.6 49 65.3
ECA234G0873 Erigeron canadensis HOM05D002753 ORTHO05D003097 9.6e-12 73.2 44 65.9
Aqoxy6G00650 Aquilegia oxysepala HOM05D002753 ORTHO05D003097 2.1e-11 72.0 49 55.1
EL10Ac9g22119 Beta vulgaris HOM05D002753 ORTHO05D003097 3.7e-11 71.2 44 65.9
AUR62030927 Chenopodium quinoa HOM05D002753 ORTHO05D003097 3.7e-11 71.2 44 63.6
MD10G1056400 Malus domestica HOM05D002753 ORTHO05D003097 4.8e-11 70.9 49 57.1
Gohir.D13G048300 Gossypium hirsutum HOM05D002753 ORTHO05D003097 6.2e-11 70.5 48 58.3
Gorai.013G053900 Gossypium raimondii HOM05D002753 ORTHO05D003097 6.2e-11 70.5 48 58.3
HanXRQChr10g0291201 Helianthus annuus HOM05D002753 ORTHO05D003097 6.2e-11 70.5 49 57.1
MELO3C018558.2 Cucumis melo HOM05D002753 ORTHO05D003097 8.1e-11 70.1 52 53.8
CsaV3_7G007440 Cucumis sativus L. HOM05D002753 ORTHO05D003097 8.1e-11 70.1 52 53.8
Nn2g15300 Nelumbo nucifera HOM05D002753 ORTHO05D003097 8.1e-11 70.1 48 62.5
Sed0024829 Sechium edule HOM05D002753 ORTHO05D003097 1.1e-10 69.7 52 53.8
Hund00392 Selenicereus undatus HOM05D002753 ORTHO05D003097 1.1e-10 69.7 49 57.1
Lsat_1_v5_gn_5_111001 Lactuca sativa HOM05D002753 ORTHO05D003097 1.4e-10 69.3 53 54.7
Prupe.8G074100 Prunus persica HOM05D002753 ORTHO05D003097 1.4e-10 69.3 49 53.1
AUR62027087 Chenopodium quinoa HOM05D002753 ORTHO05D003097 1.8e-10 68.9 44 61.4
Gohir.A13G049800 Gossypium hirsutum HOM05D002753 ORTHO05D003097 1.8e-10 68.9 48 56.2
SGA_v2.0_scaffold32G12940 Striga asiatica HOM05D002753 ORTHO05D003097 1.8e-10 68.9 49 57.1
Aa31LG3G17470 Aethionema arabicum HOM05D002753 ORTHO05D003097 3.1e-10 68.2 53 49.1
Migut.B00526 Erythranthe guttata HOM05D002753 ORTHO05D003097 3.1e-10 68.2 49 59.2
Atru.chr6.1339 Acer truncatum HOM05D002753 ORTHO05D003097 4.0e-10 67.8 49 55.1
FAN26G3199 Fragaria x ananassa HOM05D002753 ORTHO05D003097 4.0e-10 67.8 49 53.1
FvH4_1g23320 Fragaria vesca HOM05D002753 ORTHO05D003097 5.3e-10 67.4 49 53.1
FAN19G2857 Fragaria x ananassa HOM05D002753 ORTHO05D003097 5.3e-10 67.4 49 53.1
Atru.chr6.1395 Acer truncatum HOM05D002753 ORTHO05D003097 6.9e-10 67.0 49 53.1
Ah.01g024130 Amaranthus hybridus HOM05D002753 ORTHO05D003097 6.9e-10 67.0 44 59.1
PGR142G0966 Punica granatum HOM05D002753 ORTHO05D003097 6.9e-10 67.0 55 50.9
Dinv08972 Davidia involucrata HOM05D002753 ORTHO05D003097 9.0e-10 66.6 52 51.9
ClCG09G016500 Citrullus lanatus HOM05D002753 ORTHO05D003097 1.2e-09 66.2 52 51.9
Thhalv10013860m.g Eutrema salsugineum HOM05D002753 ORTHO05D003097 1.2e-09 66.2 65 46.2
RcHm_v2.0_Chr2g0118161 Rosa chinensis HOM05D002753 ORTHO05D003097 1.2e-09 66.2 49 53.1
CiPaw.05G027300 Carya illinoinensis HOM05D002753 ORTHO05D003097 1.5e-09 65.9 52 50.0
Ciclev10029816m.g Citrus clementina HOM05D002753 ORTHO05D003097 1.5e-09 65.9 49 55.1
FAN23G1321 Fragaria x ananassa HOM05D002753 ORTHO05D003097 1.5e-09 65.9 49 51.0
Os11g0167200 Oryza sativa ssp. japonica HOM05D002753 ORTHO05D003097 1.5e-09 65.9 49 51.0
PGR142G3779 Punica granatum HOM05D002753 ORTHO05D003097 1.5e-09 65.9 52 50.0
RcHm_v2.0_Chr2g0118131 Rosa chinensis HOM05D002753 ORTHO05D003097 1.5e-09 65.9 49 51.0
Sp6g33790 Schrenkiella parvula HOM05D002753 ORTHO05D003097 1.5e-09 65.9 44 59.1
Sc08g0004090 Simmondsia chinensis HOM05D002753 ORTHO05D003097 1.5e-09 65.9 49 61.2
TPR.G36451 Trifolium pratense HOM05D002753 ORTHO05D003097 1.5e-09 65.9 54 53.7
BcaC03g13263 Brassica carinata HOM05D002753 ORTHO05D003097 2.0e-09 65.5 44 59.1
A02p00030 Brassica napus HOM05D002753 ORTHO05D003097 2.0e-09 65.5 44 59.1
C02p03930 Brassica napus HOM05D002753 ORTHO05D003097 2.0e-09 65.5 44 59.1
BolC2t06356H Brassica oleracea HOM05D002753 ORTHO05D003097 2.0e-09 65.5 44 59.1
BraA02t04986Z Brassica rapa HOM05D002753 ORTHO05D003097 2.0e-09 65.5 44 59.1
Ca_18410_v3 Cicer arietinum L. HOM05D002753 ORTHO05D003097 2.0e-09 65.5 53 50.9
MBI16_g10443_MAGBIO Magnolia biondii HOM05D002753 ORTHO05D003097 2.0e-09 65.5 48 56.2
QL11p026419 Quercus lobata HOM05D002753 ORTHO05D003097 2.0e-09 65.5 51 51.0
Nitab4.5_0000935g0210 Nicotiana tabacum HOM05D002753 ORTHO05D003097 2.6e-09 65.1 49 51.0
SalBow6G5254 Salvia bowleyana HOM05D002753 ORTHO05D003097 2.6e-09 65.1 49 55.1
CSS0000609 Camellia sinensis var. sinensis HOM05D002753 ORTHO05D003097 3.4e-09 64.7 52 50.0
CSS0006440 Camellia sinensis var. sinensis HOM05D002753 ORTHO05D003097 3.4e-09 64.7 52 50.0
CSS0037026 Camellia sinensis var. sinensis HOM05D002753 ORTHO05D003097 3.4e-09 64.7 52 50.0
Phvul.002G215600 Phaseolus vulgaris HOM05D002753 ORTHO05D003097 3.4e-09 64.7 53 49.1
Solyc01g106190.4 Solanum lycopersicum HOM05D002753 ORTHO05D003097 3.4e-09 64.7 49 49.0
TPR.G16912 Trifolium pratense HOM05D002753 ORTHO05D003097 3.4e-09 64.7 45 60.0
Cc02_g20650 Coffea canephora HOM05D002753 ORTHO05D003097 4.5e-09 64.3 52 50.0
Duzib132G0158 Durio zibethinus HOM05D002753 ORTHO05D003097 4.5e-09 64.3 44 59.1
Rhsim05G0097300 Rhododendron simsii HOM05D002753 ORTHO05D003097 4.5e-09 64.3 52 50.0
Carub.0003s2766 Capsella rubella HOM05D002753 ORTHO05D003097 5.8e-09 63.9 48 50.0
Nitab4.5_0005163g0040 Nicotiana tabacum HOM05D002753 ORTHO05D003097 5.8e-09 63.9 49 51.0
Glyma.08G065200 Glycine max HOM05D002753 ORTHO05D003097 7.6e-09 63.5 53 49.1
Peaxi162Scf00016g03459 Petunia axillaris HOM05D002753 ORTHO05D003097 7.6e-09 63.5 49 49.0
Sopen01g048580 Solanum pennellii HOM05D002753 ORTHO05D003097 7.6e-09 63.5 49 46.9
AL6G19990 Arabidopsis lyrata HOM05D002753 ORTHO05D003097 1.0e-08 63.2 44 54.5
CSS0003377 Camellia sinensis var. sinensis HOM05D002753 ORTHO05D003097 1.0e-08 63.2 52 50.0
Rhsim05G0097100 Rhododendron simsii HOM05D002753 ORTHO05D003097 1.0e-08 63.2 52 48.1
vmacro19599 Vaccinium macrocarpon HOM05D002753 ORTHO05D003097 1.0e-08 63.2 52 50.0
BcaB05g21545 Brassica carinata HOM05D002753 ORTHO05D003097 1.3e-08 62.8 44 56.8
Lalb_Chr16g0383061 Lupinus albus HOM05D002753 ORTHO05D003097 1.3e-08 62.8 53 47.2
MSTRG.16630 Avicennia marina HOM05D002753 ORTHO05D003097 1.7e-08 62.4 49 53.1
Medtr1g053780 Medicago truncatula HOM05D002753 ORTHO05D003097 1.7e-08 62.4 53 50.9
Medtr1g054100 Medicago truncatula HOM05D002753 ORTHO05D003097 1.7e-08 62.4 53 50.9
Medtr4g092970 Medicago truncatula HOM05D002753 ORTHO05D003097 1.7e-08 62.4 53 50.9
CANSAT54G2703 Cannabis sativa HOM05D002753 ORTHO05D003097 2.2e-08 62.0 53 49.1
CAN.G504.39 Capsicum annuum HOM05D002753 ORTHO05D003097 2.2e-08 62.0 49 46.9
Haze_10436 Corylus avellana HOM05D002753 ORTHO05D003097 2.2e-08 62.0 51 47.1
PSO339G2269 Papaver somniferum HOM05D002753 ORTHO05D003097 2.2e-08 62.0 49 49.0
PSO339G4496 Papaver somniferum HOM05D002753 ORTHO05D003097 2.2e-08 62.0 49 49.0
PSO801G0587 Papaver somniferum HOM05D002753 ORTHO05D003097 2.2e-08 62.0 49 49.0
Psat7g103160 Pisum sativum HOM05D002753 ORTHO05D003097 2.2e-08 62.0 53 49.1
arahy.Tifrunner.gnm1.ann1.JKRU9X Arachis hypogaea HOM05D002753 ORTHO05D003097 2.9e-08 61.6 53 50.9
Actinidia28019 Actinidia chinensis HOM05D002753 ORTHO05D003097 3.8e-08 61.2 52 46.2
CSS0023717 Camellia sinensis var. sinensis HOM05D002753 ORTHO05D003097 3.8e-08 61.2 52 48.1
AT5G09580 Arabidopsis thaliana HOM05D002753 ORTHO05D003097 4.9e-08 60.8 44 52.3
Lj5A226G57 Lonicera japonica HOM05D002753 ORTHO05D003097 4.9e-08 60.8 49 51.0
Oeu033798.3 Olea europaea HOM05D002753 ORTHO05D003097 6.5e-08 60.5 52 48.1
Sabra16G0177700 Salix brachista HOM05D002753 ORTHO05D003097 6.5e-08 60.5 49 49.0
Thecc.02G125700 Theobroma cacao HOM05D002753 ORTHO05D003097 6.5e-08 60.5 53 47.2
Lj4g0007428 Lotus japonicus HOM05D002753 ORTHO05D003097 2.5e-07 58.5 53 43.4
Lj4g0024024 Lotus japonicus HOM05D002753 ORTHO05D003097 2.5e-07 58.5 53 43.4
LjContig00139g0003532 Lotus japonicus HOM05D002753 ORTHO05D003097 2.5e-07 58.5 53 43.4
LjContig00139g0010456 Lotus japonicus HOM05D002753 ORTHO05D003097 2.5e-07 58.5 53 43.4
LjContig00139g0015911 Lotus japonicus HOM05D002753 ORTHO05D003097 2.5e-07 58.5 53 43.4
TWI23G0822 Tripterygium wilfordii HOM05D002753 ORTHO05D003097 4.2e-07 57.8 44 54.5
GSVIVG01038511001 Vitis vinifera HOM05D002753 ORTHO05D003097 4.2e-07 57.8 49 46.9
Zm00001eb202470 Zea mays HOM05D002753 ORTHO05D003097 5.5e-07 57.4 49 40.8
AL6G45550 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.2e-06 56.2 45 53.3
Glyma.07G184100 Glycine max HOM05D002753 ORTHO05D003097 1.6e-06 55.8 53 45.3
Manes.10G093500 Manihot esculenta HOM05D002753 ORTHO05D003097 1.6e-06 55.8 49 42.9
DCAR_001841 Daucus carota HOM05D002753 ORTHO05D003097 2.7e-06 55.1 52 44.2
MBI08_g09789_MAGBIO Magnolia biondii HOM05D002753 ORTHO05D003097 2.7e-06 55.1 53 43.4
AL6G45630 Arabidopsis lyrata HOM05D002753 ORTHO05D003097 4.6e-06 54.3 43 51.2
AL6G45640 Arabidopsis lyrata HOM05D002753 ORTHO05D003097 4.6e-06 54.3 43 51.2
CANSAT01G0744 Cannabis sativa HOM05D002753 ORTHO05D003097 6.0e-06 53.9 44 47.7
Potri.001G285000 Populus trichocarpa HOM05D002753 ORTHO05D003097 7.9e-06 53.5 49 42.9
Sed0002549 Sechium edule HOM05D002753 ORTHO05D003097 7.9e-06 53.5 49 40.8


User provided reference genes

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